data_PTE # _chem_comp.id PTE _chem_comp.name "TUNGSTOPTERIN COFACTOR" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 Mg N10 O14 P2 S4 W" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1031.855 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PTE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1AOR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PTE C1 C1 C 0 1 N N N 19.385 0.936 -25.911 -2.942 -1.134 -0.408 C1 PTE 1 PTE C2 C2 C 0 1 N N R 20.398 0.457 -24.879 -4.207 -1.382 0.416 C2 PTE 2 PTE C3 C3 C 0 1 N N N 19.958 0.491 -23.407 -5.318 -1.807 -0.500 C3 PTE 3 PTE S3 S3 S 0 1 N N N 18.313 0.649 -22.976 -4.927 -2.899 -1.826 S3 PTE 4 PTE C4 C4 C 0 1 N N N 20.840 0.813 -22.401 -6.591 -1.383 -0.361 C4 PTE 5 PTE S4 S4 S 0 1 N N N 20.162 1.467 -20.908 -7.865 -1.911 -1.457 S4 PTE 6 PTE W1 W1 W 0 1 N N N 17.887 1.297 -20.712 -9.775 -0.888 -0.402 W1 PTE 7 PTE C5 C5 C 0 1 N N R 22.324 1.133 -22.732 -6.924 -0.445 0.774 C5 PTE 8 PTE N6 N6 N 0 1 N N N 22.852 2.496 -22.518 -7.042 0.927 0.229 N6 PTE 9 PTE C7 C7 C 0 1 N N N 24.154 2.725 -22.762 -6.947 2.027 1.108 C7 PTE 10 PTE C8 C8 C 0 1 N N N 24.930 3.713 -22.086 -7.362 3.301 0.708 C8 PTE 11 PTE O8 O8 O 0 1 N N N 24.385 4.634 -21.215 -7.821 3.487 -0.409 O8 PTE 12 PTE N9 N9 N 0 1 N N N 26.259 3.751 -22.221 -7.244 4.323 1.584 N9 PTE 13 PTE C10 C10 C 0 1 N N N 26.862 3.014 -23.186 -6.731 4.103 2.825 C10 PTE 14 PTE N10 N10 N 0 1 N N N 28.168 3.146 -23.491 -6.617 5.155 3.698 N10 PTE 15 PTE N11 N11 N 0 1 N N N 26.142 2.147 -23.945 -6.340 2.906 3.209 N11 PTE 16 PTE C12 C12 C 0 1 N N N 24.826 1.912 -23.722 -6.434 1.855 2.386 C12 PTE 17 PTE N13 N13 N 0 1 N N N 24.148 0.954 -24.402 -6.024 0.598 2.799 N13 PTE 18 PTE C14 C14 C 0 1 N N R 22.736 0.621 -24.143 -5.780 -0.446 1.798 C14 PTE 19 PTE O2 O2 O 0 1 N N N 21.681 0.988 -24.983 -4.553 -0.189 1.116 O2 PTE 20 PTE C21 C21 C 0 1 N N N 18.982 5.855 -22.743 7.170 1.344 -0.912 C21 PTE 21 PTE C22 C22 C 0 1 N N R 17.519 5.833 -22.288 8.466 1.772 -0.221 C22 PTE 22 PTE C23 C23 C 0 1 N N N 17.168 4.454 -21.706 9.522 2.001 -1.266 C23 PTE 23 PTE S23 S23 S 0 1 N N N 18.189 3.620 -20.559 9.086 2.832 -2.757 S23 PTE 24 PTE C24 C24 C 0 1 N N N 16.111 3.721 -22.262 10.789 1.598 -1.102 C24 PTE 25 PTE S24 S24 S 0 1 N N N 16.037 2.008 -21.983 11.972 1.904 -2.371 S24 PTE 26 PTE C25 C25 C 0 1 N N R 15.286 4.232 -23.449 11.181 0.880 0.166 C25 PTE 27 PTE N26 N26 N 0 1 N N N 15.654 3.865 -24.830 11.202 -0.569 -0.093 N26 PTE 28 PTE C27 C27 C 0 1 N N N 14.844 4.482 -25.713 11.152 -1.460 1.000 C27 PTE 29 PTE C28 C28 C 0 1 N N N 14.462 3.913 -26.959 11.493 -2.808 0.846 C28 PTE 30 PTE O28 O28 O 0 1 N N N 14.929 2.704 -27.378 11.847 -3.243 -0.240 O28 PTE 31 PTE N29 N29 N 0 1 N N N 13.572 4.505 -27.768 11.427 -3.617 1.926 N29 PTE 32 PTE C30 C30 C 0 1 N N N 13.053 5.726 -27.464 11.025 -3.122 3.128 C30 PTE 33 PTE N30 N30 N 0 1 N N N 12.126 6.363 -28.214 10.958 -3.964 4.210 N30 PTE 34 PTE N31 N31 N 0 1 N N N 13.417 6.335 -26.305 10.705 -1.855 3.280 N31 PTE 35 PTE C32 C32 C 0 1 N N N 14.255 5.762 -25.429 10.757 -1.003 2.249 C32 PTE 36 PTE N33 N33 N 0 1 N N N 14.493 6.416 -24.285 10.424 0.331 2.415 N33 PTE 37 PTE C34 C34 C 0 1 N N R 15.167 5.750 -23.170 10.120 1.151 1.239 C34 PTE 38 PTE O22 O22 O 0 1 N N N 16.524 6.057 -23.235 8.853 0.762 0.711 O22 PTE 39 PTE P1 P1 P 0 1 N N N 20.032 1.891 -28.159 -0.558 -0.608 -0.461 P1 PTE 40 PTE O1P O1P O 0 1 N N N 20.874 3.179 -27.728 0.687 -0.162 0.457 O1P PTE 41 PTE O2P O2P O 0 1 N N N 20.970 1.486 -29.349 -0.189 -1.965 -1.244 O2P PTE 42 PTE O3P O3P O 0 1 N N N 18.669 2.253 -28.579 -0.856 0.461 -1.441 O3P PTE 43 PTE O4P O4P O 0 1 N N N 20.137 0.777 -27.089 -1.848 -0.858 0.469 O4P PTE 44 PTE P2 P2 P 0 1 N N N 20.374 7.281 -24.188 4.788 0.832 -0.743 P2 PTE 45 PTE O5P O5P O 0 1 N N N 20.154 6.457 -25.512 3.584 0.618 0.304 O5P PTE 46 PTE O6P O6P O 0 1 N N N 20.603 8.800 -24.551 4.381 1.972 -1.804 O6P PTE 47 PTE O7P O7P O 0 1 N N N 21.638 6.760 -23.601 5.051 -0.437 -1.458 O7P PTE 48 PTE O8P O8P O 0 1 N N N 19.228 7.152 -23.267 6.115 1.286 0.049 O8P PTE 49 PTE MG1 MG1 MG 0 0 N N N 20.386 4.799 -26.617 2.114 0.104 -0.674 MG1 PTE 50 PTE O1G O1G O 0 1 N N N 18.378 4.308 -26.245 1.695 1.419 -1.891 O1G PTE 51 PTE O2G O2G O 0 1 N N N 21.386 3.999 -24.937 2.488 -1.461 -1.567 O2G PTE 52 PTE H11 H11 H 0 1 N N N 18.481 0.309 -25.917 -3.102 -0.282 -1.069 H11 PTE 53 PTE H12 H12 H 0 1 N N N 19.102 1.986 -25.747 -2.717 -2.018 -1.004 H12 PTE 54 PTE H2 H2 H 0 1 N N N 20.510 -0.616 -25.095 -4.014 -2.177 1.137 H2 PTE 55 PTE H3 H3 H 0 1 N N N 18.371 0.635 -21.677 -6.111 -2.926 -2.463 H3 PTE 56 PTE H5 H5 H 0 1 N N N 22.896 0.498 -22.040 -7.858 -0.745 1.250 H5 PTE 57 PTE H6 H6 H 0 1 N N N 22.329 3.111 -23.107 -7.182 1.066 -0.721 H6 PTE 58 PTE H9 H9 H 0 1 N N N 26.808 4.322 -21.611 -7.526 5.215 1.328 H9 PTE 59 PTE H101 H101 H 0 0 N N N 28.561 2.619 -24.244 -6.901 6.043 3.428 H101 PTE 60 PTE H102 H102 H 0 0 N N N 28.744 3.771 -22.964 -6.253 5.012 4.586 H102 PTE 61 PTE H13 H13 H 0 1 N N N 24.195 1.217 -25.366 -5.898 0.410 3.742 H13 PTE 62 PTE H14 H14 H 0 1 N N N 22.702 -0.476 -24.063 -5.729 -1.418 2.288 H14 PTE 63 PTE H211 H211 H 0 0 N N N 19.647 5.659 -21.889 6.916 2.067 -1.687 H211 PTE 64 PTE H212 H212 H 0 0 N N N 19.149 5.094 -23.520 7.306 0.361 -1.362 H212 PTE 65 PTE H22 H22 H 0 1 N N N 17.417 6.567 -21.475 8.291 2.704 0.318 H22 PTE 66 PTE H23 H23 H 0 1 N N N 17.520 2.525 -20.348 10.243 2.720 -3.434 H23 PTE 67 PTE H24 H24 H 0 1 N N N 14.959 1.675 -22.629 12.794 2.749 -1.725 H24 PTE 68 PTE H25 H25 H 0 1 N N N 14.274 3.832 -23.291 12.159 1.218 0.506 H25 PTE 69 PTE H26 H26 H 0 1 N N N 16.600 4.140 -25.003 11.251 -0.907 -1.001 H26 PTE 70 PTE H29 H29 H 0 1 N N N 13.285 4.043 -28.607 11.660 -4.555 1.842 H29 PTE 71 PTE H301 H301 H 0 0 N N N 11.747 7.235 -27.905 10.677 -3.622 5.073 H301 PTE 72 PTE H302 H302 H 0 0 N N N 11.820 5.962 -29.077 11.188 -4.901 4.110 H302 PTE 73 PTE H33 H33 H 0 1 N N N 15.051 7.212 -24.522 10.393 0.720 3.303 H33 PTE 74 PTE H34 H34 H 0 1 N N N 14.699 5.953 -22.195 10.111 2.208 1.506 H34 PTE 75 PTE HOP2 HOP2 H 0 0 N N N 20.489 1.543 -30.166 -0.002 -2.634 -0.571 HOP2 PTE 76 PTE HOP6 HOP6 H 0 0 N N N 21.489 9.051 -24.319 4.219 2.780 -1.298 HOP6 PTE 77 PTE HO11 HO11 H 0 0 N N N 17.978 4.988 -25.715 ? ? ? HO11 PTE 78 PTE HO12 HO12 H 0 0 N N N 17.912 4.235 -27.070 1.506 2.220 -1.382 HO12 PTE 79 PTE HO21 HO21 H 0 0 N N N 21.312 4.602 -24.207 ? ? ? HO21 PTE 80 PTE HO22 HO22 H 0 0 N N N 20.993 3.167 -24.701 2.701 -2.122 -0.895 HO22 PTE 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PTE C1 C2 SING N N 1 PTE C1 O4P SING N N 2 PTE C1 H11 SING N N 3 PTE C1 H12 SING N N 4 PTE C2 C3 SING N N 5 PTE C2 O2 SING N N 6 PTE C2 H2 SING N N 7 PTE C3 S3 SING N N 8 PTE C3 C4 DOUB N N 9 PTE S3 H3 SING N N 10 PTE C4 S4 SING N N 11 PTE C4 C5 SING N N 12 PTE S4 W1 SING N N 13 PTE C5 N6 SING N N 14 PTE C5 C14 SING N N 15 PTE C5 H5 SING N N 16 PTE N6 C7 SING N N 17 PTE N6 H6 SING N N 18 PTE C7 C8 SING N N 19 PTE C7 C12 DOUB N N 20 PTE C8 O8 DOUB N N 21 PTE C8 N9 SING N N 22 PTE N9 C10 SING N N 23 PTE N9 H9 SING N N 24 PTE C10 N10 SING N N 25 PTE C10 N11 DOUB N N 26 PTE N10 H101 SING N N 27 PTE N10 H102 SING N N 28 PTE N11 C12 SING N N 29 PTE C12 N13 SING N N 30 PTE N13 C14 SING N N 31 PTE N13 H13 SING N N 32 PTE C14 O2 SING N N 33 PTE C14 H14 SING N N 34 PTE C21 C22 SING N N 35 PTE C21 O8P SING N N 36 PTE C21 H211 SING N N 37 PTE C21 H212 SING N N 38 PTE C22 C23 SING N N 39 PTE C22 O22 SING N N 40 PTE C22 H22 SING N N 41 PTE C23 S23 SING N N 42 PTE C23 C24 DOUB N N 43 PTE S23 H23 SING N N 44 PTE C24 S24 SING N N 45 PTE C24 C25 SING N N 46 PTE S24 H24 SING N N 47 PTE C25 N26 SING N N 48 PTE C25 C34 SING N N 49 PTE C25 H25 SING N N 50 PTE N26 C27 SING N N 51 PTE N26 H26 SING N N 52 PTE C27 C28 SING N N 53 PTE C27 C32 DOUB N N 54 PTE C28 O28 DOUB N N 55 PTE C28 N29 SING N N 56 PTE N29 C30 SING N N 57 PTE N29 H29 SING N N 58 PTE C30 N30 SING N N 59 PTE C30 N31 DOUB N N 60 PTE N30 H301 SING N N 61 PTE N30 H302 SING N N 62 PTE N31 C32 SING N N 63 PTE C32 N33 SING N N 64 PTE N33 C34 SING N N 65 PTE N33 H33 SING N N 66 PTE C34 O22 SING N N 67 PTE C34 H34 SING N N 68 PTE P1 O1P SING N N 69 PTE P1 O2P SING N N 70 PTE P1 O3P DOUB N N 71 PTE P1 O4P SING N N 72 PTE O1P MG1 SING N N 73 PTE O2P HOP2 SING N N 74 PTE P2 O5P SING N N 75 PTE P2 O6P SING N N 76 PTE P2 O7P DOUB N N 77 PTE P2 O8P SING N N 78 PTE O5P MG1 SING N N 79 PTE O6P HOP6 SING N N 80 PTE MG1 O1G SING N N 81 PTE MG1 O2G SING N N 82 PTE O1G HO11 SING N N 83 PTE O1G HO12 SING N N 84 PTE O2G HO21 SING N N 85 PTE O2G HO22 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PTE InChI InChI 1.06 "InChI=1S/2C10H14N5O6PS2.Mg.2H2O.W/c2*11-10-14-7-4(8(16)15-10)12-3-6(24)5(23)2(21-9(3)13-7)1-20-22(17,18)19;;;;/h2*2-3,9,12,23-24H,1H2,(H2,17,18,19)(H4,11,13,14,15,16);;2*1H2;/q;;+2;;;+1/p-3/t2*2-,3+,9-;;;;/m11..../s1" PTE InChIKey InChI 1.06 PZGYSZZGRVZGLK-MAAILCHMSA-K PTE SMILES_CANONICAL CACTVS 3.385 "O.O.NC1=NC2=C(N[C@@H]3[C@H](N2)O[C@H](CO[P](O)(=O)O[Mg]O[P](O)(=O)OC[C@H]4O[C@H]5NC6=C(N[C@H]5C(=C4S)S[W])C(=O)NC(=N6)N)C(=C3S)S)C(=O)N1" PTE SMILES CACTVS 3.385 "O.O.NC1=NC2=C(N[CH]3[CH](N2)O[CH](CO[P](O)(=O)O[Mg]O[P](O)(=O)OC[CH]4O[CH]5NC6=C(N[CH]5C(=C4S)S[W])C(=O)NC(=N6)N)C(=C3S)S)C(=O)N1" PTE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1C(=C([C@H]2[C@@H](O1)NC3=C(N2)C(=O)NC(=N3)N)S)S)O[P@](=O)(O)O[Mg]([OH2])([OH2])O[P@@](=O)(O)OC[C@@H]4C(=C([C@H]5[C@@H](O4)NC6=C(N5)C(=O)NC(=N6)N)S[W])S" PTE SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(=C(C2C(O1)NC3=C(N2)C(=O)NC(=N3)N)S)S)OP(=O)(O)O[Mg]([OH2])([OH2])OP(=O)(O)OCC4C(=C(C5C(O4)NC6=C(N5)C(=O)NC(=N6)N)S[W])S" # _pdbx_chem_comp_identifier.comp_id PTE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(5~{a}~{R},8~{R},9~{a}~{R})-2-azanyl-4-oxidanylidene-6,7-bis(sulfanyl)-3,5,5~{a},8,9~{a},10-hexahydropyrano[3,2-g]pteridin-8-yl]methoxy-oxidanyl-phosphoryl]oxy-[[(5~{a}~{R},8~{R},9~{a}~{R})-2-azanyl-4-oxidanylidene-7-sulfanyl-6-tungsteniosulfanyl-3,5,5~{a},8,9~{a},10-hexahydropyrano[3,2-g]pteridin-8-yl]methoxy-oxidanyl-phosphoryl]oxy-bis($l^{3}-oxidanyl)magnesium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PTE "Create component" 1999-07-08 RCSB PTE "Modify descriptor" 2023-09-23 RCSB #