data_PVY # _chem_comp.id PVY _chem_comp.name "9-[2-carboxy-5-({2-[2-(hexyloxy)ethoxy]ethyl}carbamoyl)phenyl]-6-(dimethylamino)-N,N-dimethyl-3H-xanthen-3-iminium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H44 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2019-08-26 _chem_comp.pdbx_modified_date 2020-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 602.740 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PVY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6U32 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PVY CBO C1 C 0 1 N N N 85.145 54.054 7.474 11.498 4.486 -0.136 CBO PVY 1 PVY CBN C2 C 0 1 N N N 84.372 52.733 7.625 10.923 3.344 -0.977 CBN PVY 2 PVY CBM C3 C 0 1 N N N 83.019 53.092 7.969 10.170 2.371 -0.068 CBM PVY 3 PVY CBL C4 C 0 1 N N N 82.284 51.821 8.465 9.595 1.229 -0.909 CBL PVY 4 PVY CBK C5 C 0 1 N N N 80.874 52.425 8.699 8.842 0.255 0.000 CBK PVY 5 PVY CBJ C6 C 0 1 N N N 79.901 51.621 9.517 8.267 -0.886 -0.840 CBJ PVY 6 PVY OBI O1 O 0 1 N N N 80.268 50.324 9.392 7.563 -1.796 0.009 OBI PVY 7 PVY CBH C7 C 0 1 N N N 80.057 49.385 8.704 6.984 -2.905 -0.681 CBH PVY 8 PVY CBG C8 C 0 1 N N N 78.983 48.391 9.341 6.261 -3.807 0.321 CBG PVY 9 PVY OBF O2 O 0 1 N N N 78.421 47.764 7.949 5.158 -3.098 0.890 OBF PVY 10 PVY CBE C9 C 0 1 N N N 76.999 47.399 7.696 4.411 -3.855 1.844 CBE PVY 11 PVY CBD C10 C 0 1 N N N 76.885 47.039 6.244 3.261 -3.002 2.384 CBD PVY 12 PVY NBB N1 N 0 1 N N N 75.511 46.538 5.998 2.320 -2.707 1.301 NBB PVY 13 PVY CBA C11 C 0 1 N N N 74.442 47.274 5.537 1.223 -1.965 1.545 CBA PVY 14 PVY OBC O3 O 0 1 N N N 74.536 48.448 5.267 1.013 -1.539 2.664 OBC PVY 15 PVY CAQ C12 C 0 1 Y N N 73.153 46.667 5.546 0.272 -1.667 0.450 CAQ PVY 16 PVY CAP C13 C 0 1 Y N N 72.054 47.462 5.814 -0.862 -0.899 0.704 CAP PVY 17 PVY CAR C14 C 0 1 Y N N 72.938 45.310 5.347 0.517 -2.152 -0.837 CAR PVY 18 PVY CAS C15 C 0 1 Y N N 71.612 44.815 5.432 -0.363 -1.879 -1.864 CAS PVY 19 PVY CAT C16 C 0 1 Y N N 70.538 45.701 5.717 -1.504 -1.117 -1.624 CAT PVY 20 PVY CBP C17 C 0 1 N N N 69.219 45.299 5.776 -2.446 -0.825 -2.726 CBP PVY 21 PVY OBR O4 O 0 1 N N N 68.387 45.982 6.445 -2.201 -1.297 -3.964 OBR PVY 22 PVY OBQ O5 O 0 1 N N N 68.906 44.292 5.104 -3.440 -0.160 -2.515 OBQ PVY 23 PVY CAG C18 C 0 1 Y N N 70.737 47.036 5.917 -1.756 -0.620 -0.329 CAG PVY 24 PVY CAC C19 C 0 1 N N N 69.627 47.892 6.232 -2.959 0.192 -0.068 CAC PVY 25 PVY CAB C20 C 0 1 N N N 69.447 48.346 7.541 -2.872 1.586 0.104 CAB PVY 26 PVY CAK C21 C 0 1 N N N 70.138 47.753 8.608 -1.625 2.243 0.032 CAK PVY 27 PVY CAJ C22 C 0 1 N N N 70.032 48.250 9.909 -1.557 3.583 0.201 CAJ PVY 28 PVY CAI C23 C 0 1 N N N 69.243 49.365 10.199 -2.775 4.350 0.457 CAI PVY 29 PVY NAU N2 N 1 1 N N N 69.119 49.805 11.539 -2.705 5.666 0.622 NAU PVY 30 PVY CAW C24 C 0 1 N N N 68.017 50.749 11.842 -1.410 6.346 0.547 CAW PVY 31 PVY CAV C25 C 0 1 N N N 70.039 49.310 12.590 -3.924 6.437 0.879 CAV PVY 32 PVY CAH C26 C 0 1 N N N 68.558 49.993 9.136 -4.023 3.697 0.529 CAH PVY 33 PVY CAA C27 C 0 1 N N N 68.666 49.472 7.847 -4.095 2.345 0.360 CAA PVY 34 PVY OAF O6 O 0 1 N N N 67.997 50.072 6.824 -5.289 1.718 0.429 OAF PVY 35 PVY CAE C28 C 0 1 Y N N 68.179 49.732 5.494 -5.413 0.383 0.269 CAE PVY 36 PVY CAO C29 C 0 1 Y N N 67.598 50.497 4.471 -6.665 -0.208 0.351 CAO PVY 37 PVY CAD C30 C 0 1 Y N N 68.983 48.615 5.203 -4.287 -0.425 0.014 CAD PVY 38 PVY CAL C31 C 0 1 Y N N 69.203 48.311 3.877 -4.437 -1.808 -0.149 CAL PVY 39 PVY CAM C32 C 0 1 Y N N 68.564 49.024 2.857 -5.674 -2.374 -0.061 CAM PVY 40 PVY CAN C33 C 0 1 Y N N 67.754 50.158 3.110 -6.796 -1.580 0.186 CAN PVY 41 PVY NAX N3 N 0 1 N N N 67.160 50.865 2.082 -8.052 -2.168 0.274 NAX PVY 42 PVY CAZ C34 C 0 1 N N N 66.761 52.264 2.307 -8.196 -3.617 0.109 CAZ PVY 43 PVY CAY C35 C 0 1 N N N 67.034 50.291 0.686 -9.232 -1.340 0.533 CAY PVY 44 PVY H1 H1 H 0 1 N N N 86.191 53.839 7.210 12.034 5.180 -0.784 H1 PVY 45 PVY H2 H2 H 0 1 N N N 84.684 54.660 6.680 10.686 5.012 0.366 H2 PVY 46 PVY H3 H3 H 0 1 N N N 85.113 54.608 8.424 12.182 4.080 0.608 H3 PVY 47 PVY H4 H4 H 0 1 N N N 84.388 52.172 6.679 10.238 3.750 -1.721 H4 PVY 48 PVY H5 H5 H 0 1 N N N 84.818 52.120 8.422 11.735 2.818 -1.479 H5 PVY 49 PVY H6 H6 H 0 1 N N N 83.027 53.850 8.766 10.854 1.965 0.677 H6 PVY 50 PVY H7 H7 H 0 1 N N N 82.506 53.496 7.084 9.358 2.897 0.434 H7 PVY 51 PVY H8 H8 H 0 1 N N N 82.271 51.029 7.702 8.910 1.635 -1.653 H8 PVY 52 PVY H9 H9 H 0 1 N N N 82.723 51.428 9.394 10.407 0.703 -1.411 H9 PVY 53 PVY H10 H10 H 0 1 N N N 81.010 53.392 9.205 9.527 -0.150 0.745 H10 PVY 54 PVY H11 H11 H 0 1 N N N 80.418 52.589 7.712 8.030 0.781 0.502 H11 PVY 55 PVY H12 H12 H 0 1 N N N 79.948 51.928 10.572 7.582 -0.481 -1.585 H12 PVY 56 PVY H13 H13 H 0 1 N N N 78.878 51.764 9.138 9.079 -1.412 -1.342 H13 PVY 57 PVY H14 H14 H 0 1 N N N 81.000 48.838 8.555 6.273 -2.541 -1.422 H14 PVY 58 PVY H15 H15 H 0 1 N N N 79.680 49.737 7.733 7.770 -3.473 -1.180 H15 PVY 59 PVY H16 H16 H 0 1 N N N 78.203 48.923 9.905 5.895 -4.698 -0.190 H16 PVY 60 PVY H17 H17 H 0 1 N N N 79.447 47.630 9.986 6.952 -4.099 1.112 H17 PVY 61 PVY H18 H18 H 0 1 N N N 76.344 48.253 7.925 4.007 -4.747 1.365 H18 PVY 62 PVY H19 H19 H 0 1 N N N 76.714 46.540 8.321 5.063 -4.148 2.666 H19 PVY 63 PVY H20 H20 H 0 1 N N N 77.617 46.256 5.996 2.746 -3.546 3.176 H20 PVY 64 PVY H21 H21 H 0 1 N N N 77.074 47.928 5.624 3.658 -2.069 2.784 H21 PVY 65 PVY H22 H22 H 0 1 N N N 75.344 45.570 6.185 2.487 -3.047 0.408 H22 PVY 66 PVY H23 H23 H 0 1 N N N 72.238 48.517 5.957 -1.048 -0.522 1.698 H23 PVY 67 PVY H24 H24 H 0 1 N N N 73.762 44.646 5.132 1.400 -2.744 -1.029 H24 PVY 68 PVY H25 H25 H 0 1 N N N 71.418 43.764 5.280 -0.167 -2.257 -2.857 H25 PVY 69 PVY H26 H26 H 0 1 N N N 67.519 45.608 6.349 -2.845 -1.081 -4.651 H26 PVY 70 PVY H27 H27 H 0 1 N N N 70.765 46.894 8.420 -0.725 1.675 -0.157 H27 PVY 71 PVY H28 H28 H 0 1 N N N 70.571 47.762 10.707 -0.603 4.087 0.146 H28 PVY 72 PVY H29 H29 H 0 1 N N N 68.037 51.006 12.911 -1.217 6.648 -0.482 H29 PVY 73 PVY H30 H30 H 0 1 N N N 68.142 51.663 11.243 -1.425 7.228 1.188 H30 PVY 74 PVY H31 H31 H 0 1 N N N 67.053 50.279 11.597 -0.624 5.668 0.880 H31 PVY 75 PVY H32 H32 H 0 1 N N N 69.776 49.770 13.554 -4.098 6.495 1.954 H32 PVY 76 PVY H33 H33 H 0 1 N N N 69.951 48.216 12.669 -3.810 7.443 0.475 H33 PVY 77 PVY H34 H34 H 0 1 N N N 71.073 49.576 12.327 -4.772 5.947 0.400 H34 PVY 78 PVY H35 H35 H 0 1 N N N 67.955 50.870 9.320 -4.921 4.267 0.719 H35 PVY 79 PVY H36 H36 H 0 1 N N N 67.016 51.368 4.732 -7.537 0.399 0.542 H36 PVY 80 PVY H37 H37 H 0 1 N N N 69.880 47.509 3.621 -3.573 -2.426 -0.345 H37 PVY 81 PVY H38 H38 H 0 1 N N N 68.693 48.697 1.836 -5.788 -3.441 -0.187 H38 PVY 82 PVY H39 H39 H 0 1 N N N 66.913 52.524 3.365 -8.100 -4.104 1.079 H39 PVY 83 PVY H40 H40 H 0 1 N N N 67.373 52.926 1.676 -9.175 -3.839 -0.314 H40 PVY 84 PVY H41 H41 H 0 1 N N N 65.699 52.389 2.048 -7.418 -3.985 -0.561 H41 PVY 85 PVY H42 H42 H 0 1 N N N 67.371 49.244 0.688 -9.394 -1.263 1.608 H42 PVY 86 PVY H43 H43 H 0 1 N N N 65.983 50.338 0.364 -9.076 -0.345 0.117 H43 PVY 87 PVY H44 H44 H 0 1 N N N 67.657 50.875 -0.008 -10.105 -1.796 0.066 H44 PVY 88 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PVY CAY NAX SING N N 1 PVY NAX CAZ SING N N 2 PVY NAX CAN SING N N 3 PVY CAM CAN DOUB Y N 4 PVY CAM CAL SING Y N 5 PVY CAN CAO SING Y N 6 PVY CAL CAD DOUB Y N 7 PVY CAO CAE DOUB Y N 8 PVY OBQ CBP DOUB N N 9 PVY CAD CAE SING Y N 10 PVY CAD CAC SING N N 11 PVY OBC CBA DOUB N N 12 PVY CAR CAS DOUB Y N 13 PVY CAR CAQ SING Y N 14 PVY CAS CAT SING Y N 15 PVY CAE OAF SING N N 16 PVY CBA CAQ SING N N 17 PVY CBA NBB SING N N 18 PVY CAQ CAP DOUB Y N 19 PVY CAT CBP SING N N 20 PVY CAT CAG DOUB Y N 21 PVY CBP OBR SING N N 22 PVY CAP CAG SING Y N 23 PVY CAG CAC SING N N 24 PVY NBB CBD SING N N 25 PVY CAC CAB DOUB N N 26 PVY CBD CBE SING N N 27 PVY OAF CAA SING N N 28 PVY CBO CBN SING N N 29 PVY CAB CAA SING N N 30 PVY CAB CAK SING N N 31 PVY CBN CBM SING N N 32 PVY CBE OBF SING N N 33 PVY CAA CAH DOUB N N 34 PVY OBF CBG SING N N 35 PVY CBM CBL SING N N 36 PVY CBL CBK SING N N 37 PVY CAK CAJ DOUB N N 38 PVY CBK CBJ SING N N 39 PVY CBH CBG SING N N 40 PVY CBH OBI SING N N 41 PVY CAH CAI SING N N 42 PVY OBI CBJ SING N N 43 PVY CAJ CAI SING N N 44 PVY CAI NAU DOUB N N 45 PVY NAU CAW SING N N 46 PVY NAU CAV SING N N 47 PVY CBO H1 SING N N 48 PVY CBO H2 SING N N 49 PVY CBO H3 SING N N 50 PVY CBN H4 SING N N 51 PVY CBN H5 SING N N 52 PVY CBM H6 SING N N 53 PVY CBM H7 SING N N 54 PVY CBL H8 SING N N 55 PVY CBL H9 SING N N 56 PVY CBK H10 SING N N 57 PVY CBK H11 SING N N 58 PVY CBJ H12 SING N N 59 PVY CBJ H13 SING N N 60 PVY CBH H14 SING N N 61 PVY CBH H15 SING N N 62 PVY CBG H16 SING N N 63 PVY CBG H17 SING N N 64 PVY CBE H18 SING N N 65 PVY CBE H19 SING N N 66 PVY CBD H20 SING N N 67 PVY CBD H21 SING N N 68 PVY NBB H22 SING N N 69 PVY CAP H23 SING N N 70 PVY CAR H24 SING N N 71 PVY CAS H25 SING N N 72 PVY OBR H26 SING N N 73 PVY CAK H27 SING N N 74 PVY CAJ H28 SING N N 75 PVY CAW H29 SING N N 76 PVY CAW H30 SING N N 77 PVY CAW H31 SING N N 78 PVY CAV H32 SING N N 79 PVY CAV H33 SING N N 80 PVY CAV H34 SING N N 81 PVY CAH H35 SING N N 82 PVY CAO H36 SING N N 83 PVY CAL H37 SING N N 84 PVY CAM H38 SING N N 85 PVY CAZ H39 SING N N 86 PVY CAZ H40 SING N N 87 PVY CAZ H41 SING N N 88 PVY CAY H42 SING N N 89 PVY CAY H43 SING N N 90 PVY CAY H44 SING N N 91 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PVY SMILES ACDLabs 12.01 "CCCCCCOCCOCCNC(c1cc(c(cc1)C(O)=O)C3=C2C(=CC(/C=C2)=[N+](\C)C)Oc4cc(ccc34)N(C)C)=O" PVY InChI InChI 1.03 "InChI=1S/C35H43N3O6/c1-6-7-8-9-17-42-19-20-43-18-16-36-34(39)24-10-13-27(35(40)41)30(21-24)33-28-14-11-25(37(2)3)22-31(28)44-32-23-26(38(4)5)12-15-29(32)33/h10-15,21-23H,6-9,16-20H2,1-5H3,(H-,36,39,40,41)/p+1" PVY InChIKey InChI 1.03 HKVFTIWQXRNXNR-UHFFFAOYSA-O PVY SMILES_CANONICAL CACTVS 3.385 "CCCCCCOCCOCCNC(=O)c1ccc(C(O)=O)c(c1)C2=C3C=CC(C=C3Oc4cc(ccc24)N(C)C)=[N+](C)C" PVY SMILES CACTVS 3.385 "CCCCCCOCCOCCNC(=O)c1ccc(C(O)=O)c(c1)C2=C3C=CC(C=C3Oc4cc(ccc24)N(C)C)=[N+](C)C" PVY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCOCCOCCNC(=O)c1ccc(c(c1)C2=C3C=CC(=[N+](C)C)C=C3Oc4c2ccc(c4)N(C)C)C(=O)O" PVY SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCOCCOCCNC(=O)c1ccc(c(c1)C2=C3C=CC(=[N+](C)C)C=C3Oc4c2ccc(c4)N(C)C)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PVY "SYSTEMATIC NAME" ACDLabs 12.01 "9-[2-carboxy-5-({2-[2-(hexyloxy)ethoxy]ethyl}carbamoyl)phenyl]-6-(dimethylamino)-N,N-dimethyl-3H-xanthen-3-iminium" PVY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[9-[2-carboxy-5-[2-(2-hexoxyethoxy)ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PVY "Create component" 2019-08-26 RCSB PVY "Initial release" 2020-09-30 RCSB ##