data_QBQ # _chem_comp.id QBQ _chem_comp.name 7-deaza-GTP _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H17 N4 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-02 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.192 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QBQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Z86 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QBQ O3 O1 O 0 1 N N N 44.224 -16.326 -76.781 2.924 -2.897 -0.588 O3 QBQ 1 QBQ C4 C1 C 0 1 Y N N 38.393 -13.453 -81.546 -3.746 0.756 -1.624 C4 QBQ 2 QBQ C5 C2 C 0 1 N N R 39.938 -12.330 -79.864 -3.303 -0.699 0.381 C5 QBQ 3 QBQ O4 O2 O 0 1 N N N 41.959 -16.450 -75.695 3.368 -0.482 -0.001 O4 QBQ 4 QBQ C6 C3 C 0 1 N N R 41.536 -13.143 -78.453 -1.393 -1.973 0.363 C6 QBQ 5 QBQ N1 N1 N 0 1 N N N 40.123 -10.420 -82.132 -5.972 0.749 1.163 N1 QBQ 6 QBQ C7 C4 C 0 1 N N N 42.085 -14.504 -78.141 -0.144 -2.320 -0.450 C7 QBQ 7 QBQ C8 C5 C 0 1 N N S 40.302 -12.735 -77.628 -2.523 -2.986 0.074 C8 QBQ 8 QBQ N2 N2 N 0 1 Y N N 39.302 -12.475 -81.171 -4.079 0.284 -0.380 N2 QBQ 9 QBQ C9 C6 C 0 1 N N R 39.164 -12.814 -78.657 -3.808 -2.128 0.086 C9 QBQ 10 QBQ O5 O3 O 0 1 N N N 40.037 -17.813 -74.752 5.621 -1.423 0.976 O5 QBQ 11 QBQ C10 C7 C 0 1 N N N 38.103 -10.885 -84.141 -6.850 2.478 -0.777 C10 QBQ 12 QBQ O6 O4 O 0 1 N N N 41.728 -16.570 -73.160 5.515 -0.395 -1.326 O6 QBQ 13 QBQ N3 N3 N 0 1 N N N 38.970 -9.810 -84.119 -7.539 2.302 0.373 N3 QBQ 14 QBQ O7 O5 O 0 1 N N N 40.138 -15.260 -74.614 5.311 1.166 0.646 O7 QBQ 15 QBQ O8 O6 O 0 1 N N N 39.355 -13.258 -73.419 6.539 3.190 1.791 O8 QBQ 16 QBQ N N4 N 0 1 N N N 40.609 -8.454 -83.219 -7.797 1.282 2.482 N QBQ 17 QBQ C C8 C 0 1 N N N 39.916 -9.593 -83.152 -7.077 1.441 1.324 C QBQ 18 QBQ O O7 O 0 1 N N N 41.127 -13.083 -79.837 -1.925 -0.697 -0.054 O QBQ 19 QBQ C1 C9 C 0 1 Y N N 39.303 -11.503 -82.136 -5.238 0.863 0.047 C1 QBQ 20 QBQ C2 C10 C 0 1 Y N N 38.321 -11.823 -83.079 -5.661 1.738 -0.963 C2 QBQ 21 QBQ C3 C11 C 0 1 Y N N 37.763 -13.076 -82.698 -4.666 1.647 -2.030 C3 QBQ 22 QBQ O1 O8 O 0 1 N N N 42.761 -14.341 -76.881 0.923 -1.444 -0.082 O1 QBQ 23 QBQ O10 O9 O 0 1 N N N 37.758 -14.522 -74.913 7.831 1.304 0.721 O10 QBQ 24 QBQ O11 O10 O 0 1 N N N 40.456 -11.414 -77.118 -2.576 -3.982 1.097 O11 QBQ 25 QBQ O12 O11 O 0 1 N N N 38.000 -12.032 -78.373 -4.694 -2.569 1.117 O12 QBQ 26 QBQ O13 O12 O 0 1 N N N 37.173 -10.927 -84.948 -7.252 3.244 -1.636 O13 QBQ 27 QBQ O2 O13 O 0 1 N N N 43.674 -14.958 -74.626 2.297 -1.156 -2.305 O2 QBQ 28 QBQ O9 O14 O 0 1 N N N 38.574 -15.532 -72.699 6.632 2.903 -0.820 O9 QBQ 29 QBQ P P1 P 0 1 N N N 43.234 -15.532 -75.971 2.390 -1.525 -0.741 P QBQ 30 QBQ P1 P2 P 0 1 N N N 40.977 -16.600 -74.450 4.966 -0.286 0.044 P1 QBQ 31 QBQ P2 P3 P 0 1 N N N 38.876 -14.617 -73.894 6.605 2.123 0.587 P2 QBQ 32 QBQ H7 H1 H 0 1 N N N 38.211 -14.372 -81.009 -2.875 0.459 -2.190 H7 QBQ 33 QBQ H H2 H 0 1 N N N 40.178 -11.268 -79.708 -3.364 -0.488 1.449 H QBQ 34 QBQ H1 H3 H 0 1 N N N 42.326 -12.398 -78.275 -1.160 -1.958 1.428 H1 QBQ 35 QBQ H9 H4 H 0 1 N N N 41.272 -15.240 -78.054 0.146 -3.352 -0.247 H9 QBQ 36 QBQ H8 H5 H 0 1 N N N 42.790 -14.827 -78.921 -0.359 -2.206 -1.512 H8 QBQ 37 QBQ H2 H6 H 0 1 N N N 40.132 -13.464 -76.822 -2.379 -3.449 -0.902 H2 QBQ 38 QBQ H3 H7 H 0 1 N N N 38.889 -13.869 -78.803 -4.303 -2.166 -0.884 H3 QBQ 39 QBQ H11 H8 H 0 1 N N N 40.063 -18.423 -74.024 5.306 -1.411 1.891 H11 QBQ 40 QBQ H16 H9 H 0 1 N N N 38.902 -9.143 -84.861 -8.359 2.797 0.526 H16 QBQ 41 QBQ H12 H10 H 0 1 N N N 38.857 -12.576 -73.855 7.289 3.800 1.818 H12 QBQ 42 QBQ H5 H11 H 0 1 N N N 41.275 -8.231 -82.507 -8.621 1.778 2.613 H5 QBQ 43 QBQ H4 H12 H 0 1 N N N 40.462 -7.824 -83.981 -7.483 0.674 3.169 H4 QBQ 44 QBQ H6 H13 H 0 1 N N N 36.991 -13.623 -83.219 -4.669 2.191 -2.963 H6 QBQ 45 QBQ H14 H14 H 0 1 N N N 41.165 -11.399 -76.486 -3.268 -4.644 0.965 H14 QBQ 46 QBQ H15 H15 H 0 1 N N N 37.560 -12.384 -77.608 -5.042 -3.461 0.982 H15 QBQ 47 QBQ H10 H16 H 0 1 N N N 44.580 -15.193 -74.462 1.954 -0.269 -2.480 H10 QBQ 48 QBQ H13 H17 H 0 1 N N N 37.705 -15.903 -72.796 5.858 3.461 -0.976 H13 QBQ 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QBQ O13 C10 DOUB N N 1 QBQ C10 N3 SING N N 2 QBQ C10 C2 SING N N 3 QBQ N3 C SING N N 4 QBQ N C SING N N 5 QBQ C N1 DOUB N N 6 QBQ C2 C3 SING Y N 7 QBQ C2 C1 DOUB Y N 8 QBQ C3 C4 DOUB Y N 9 QBQ C1 N1 SING N N 10 QBQ C1 N2 SING Y N 11 QBQ C4 N2 SING Y N 12 QBQ N2 C5 SING N N 13 QBQ C5 O SING N N 14 QBQ C5 C9 SING N N 15 QBQ O C6 SING N N 16 QBQ C9 O12 SING N N 17 QBQ C9 C8 SING N N 18 QBQ C6 C7 SING N N 19 QBQ C6 C8 SING N N 20 QBQ C7 O1 SING N N 21 QBQ C8 O11 SING N N 22 QBQ O1 P SING N N 23 QBQ O3 P DOUB N N 24 QBQ P O4 SING N N 25 QBQ P O2 SING N N 26 QBQ O4 P1 SING N N 27 QBQ O10 P2 DOUB N N 28 QBQ O5 P1 SING N N 29 QBQ O7 P1 SING N N 30 QBQ O7 P2 SING N N 31 QBQ P1 O6 DOUB N N 32 QBQ P2 O8 SING N N 33 QBQ P2 O9 SING N N 34 QBQ C4 H7 SING N N 35 QBQ C5 H SING N N 36 QBQ C6 H1 SING N N 37 QBQ C7 H9 SING N N 38 QBQ C7 H8 SING N N 39 QBQ C8 H2 SING N N 40 QBQ C9 H3 SING N N 41 QBQ O5 H11 SING N N 42 QBQ N3 H16 SING N N 43 QBQ O8 H12 SING N N 44 QBQ N H5 SING N N 45 QBQ N H4 SING N N 46 QBQ C3 H6 SING N N 47 QBQ O11 H14 SING N N 48 QBQ O12 H15 SING N N 49 QBQ O2 H10 SING N N 50 QBQ O9 H13 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QBQ InChI InChI 1.03 "InChI=1S/C11H17N4O14P3/c12-11-13-8-4(9(18)14-11)1-2-15(8)10-7(17)6(16)5(27-10)3-26-31(22,23)29-32(24,25)28-30(19,20)21/h1-2,5-7,10,16-17H,3H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,12,13,14,18)/t5-,6-,7-,10-/m1/s1" QBQ InChIKey InChI 1.03 NOXMCJDDSWCSIE-DAGMQNCNSA-N QBQ SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(ccc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O" QBQ SMILES CACTVS 3.385 "NC1=Nc2n(ccc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O" QBQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" QBQ SMILES "OpenEye OEToolkits" 2.0.7 "c1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id QBQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QBQ "Create component" 2020-06-02 PDBE QBQ "Initial release" 2020-12-09 RCSB QBQ "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id QBQ _pdbx_chem_comp_synonyms.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##