data_QDJ # _chem_comp.id QDJ _chem_comp.name "tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-3-(naphthalen-1-yl)-1-oxo-1-{[(pyridin-3-yl)methyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H39 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-17 _chem_comp.pdbx_modified_date 2020-01-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.789 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QDJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6UNL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QDJ C01 C1 C 0 1 N N N -27.321 -15.711 -11.714 0.179 4.078 -2.431 C01 QDJ 1 QDJ C02 C2 C 0 1 N N N -27.277 -14.674 -10.544 -1.343 4.101 -2.589 C02 QDJ 2 QDJ C03 C3 C 0 1 N N N -26.857 -13.268 -11.142 -1.947 5.067 -1.568 C03 QDJ 3 QDJ C04 C4 C 0 1 N N N -28.693 -14.486 -9.956 -1.702 4.563 -4.003 C04 QDJ 4 QDJ C06 C5 C 0 1 N N N -26.365 -16.415 -8.811 -1.642 2.212 -1.162 C06 QDJ 5 QDJ C09 C6 C 0 1 N N R -23.747 -17.095 -8.762 -1.856 0.371 0.420 C09 QDJ 6 QDJ C10 C7 C 0 1 N N N -22.957 -16.403 -7.545 -0.347 0.258 0.650 C10 QDJ 7 QDJ C12 C8 C 0 1 N N S -22.573 -19.600 -5.769 2.095 -1.017 -0.035 C12 QDJ 8 QDJ C13 C9 C 0 1 N N N -24.031 -20.203 -6.145 2.797 -2.108 -0.847 C13 QDJ 9 QDJ C14 C10 C 0 1 Y N N -25.287 -19.723 -5.350 2.195 -3.448 -0.513 C14 QDJ 10 QDJ C15 C11 C 0 1 Y N N -25.346 -18.993 -4.019 1.117 -3.945 -1.264 C15 QDJ 11 QDJ C16 C12 C 0 1 Y N N -24.146 -18.665 -3.273 0.575 -3.214 -2.336 C16 QDJ 12 QDJ C17 C13 C 0 1 Y N N -24.221 -17.986 -2.027 -0.469 -3.727 -3.041 C17 QDJ 13 QDJ C18 C14 C 0 1 Y N N -25.471 -17.597 -1.490 -1.013 -4.969 -2.717 C18 QDJ 14 QDJ C19 C15 C 0 1 Y N N -26.663 -17.904 -2.195 -0.515 -5.705 -1.687 C19 QDJ 15 QDJ C20 C16 C 0 1 Y N N -26.575 -18.612 -3.464 0.564 -5.208 -0.935 C20 QDJ 16 QDJ C21 C17 C 0 1 Y N N -27.842 -18.895 -4.130 1.105 -5.939 0.135 C21 QDJ 17 QDJ C22 C18 C 0 1 Y N N -27.815 -19.575 -5.379 2.151 -5.426 0.841 C22 QDJ 18 QDJ C23 C19 C 0 1 Y N N -26.551 -19.974 -5.964 2.697 -4.187 0.515 C23 QDJ 19 QDJ C24 C20 C 0 1 N N N -21.308 -20.403 -6.215 2.785 0.303 -0.266 C24 QDJ 20 QDJ C27 C21 C 0 1 N N N -19.791 -22.298 -6.706 4.594 1.876 0.169 C27 QDJ 21 QDJ C28 C22 C 0 1 Y N N -19.529 -22.374 -8.208 5.835 1.950 1.020 C28 QDJ 22 QDJ C29 C23 C 0 1 Y N N -18.235 -22.603 -8.707 7.047 1.498 0.531 C29 QDJ 23 QDJ C31 C24 C 0 1 Y N N -18.960 -22.608 -10.930 8.119 2.051 2.494 C31 QDJ 24 QDJ C32 C25 C 0 1 Y N N -20.286 -22.380 -10.530 6.946 2.526 3.047 C32 QDJ 25 QDJ C33 C26 C 0 1 Y N N -20.557 -22.280 -9.155 5.778 2.477 2.301 C33 QDJ 26 QDJ C34 C27 C 0 1 N N N -23.035 -18.475 -9.285 -2.474 1.247 1.513 C34 QDJ 27 QDJ C35 C28 C 0 1 Y N N -21.755 -18.441 -10.208 -3.972 1.268 1.352 C35 QDJ 28 QDJ C36 C29 C 0 1 Y N N -20.398 -18.088 -9.721 -4.752 0.217 1.862 C36 QDJ 29 QDJ C37 C30 C 0 1 Y N N -20.236 -17.738 -8.371 -4.165 -0.872 2.528 C37 QDJ 30 QDJ C38 C31 C 0 1 Y N N -18.987 -17.385 -7.821 -4.952 -1.872 3.009 C38 QDJ 31 QDJ C39 C32 C 0 1 Y N N -17.888 -17.384 -8.646 -6.336 -1.834 2.851 C39 QDJ 32 QDJ C40 C33 C 0 1 Y N N -18.020 -17.731 -10.005 -6.941 -0.796 2.211 C40 QDJ 33 QDJ C41 C34 C 0 1 Y N N -19.288 -18.085 -10.523 -6.160 0.255 1.701 C41 QDJ 34 QDJ C42 C35 C 0 1 Y N N -19.367 -18.422 -11.934 -6.748 1.344 1.035 C42 QDJ 35 QDJ C43 C36 C 0 1 Y N N -20.652 -18.771 -12.447 -5.960 2.345 0.555 C43 QDJ 36 QDJ C44 C37 C 0 1 Y N N -21.823 -18.785 -11.590 -4.577 2.309 0.717 C44 QDJ 37 QDJ N08 N1 N 0 1 N N N -25.199 -17.255 -8.371 -2.107 0.976 -0.890 N08 QDJ 38 QDJ N26 N2 N 0 1 N N N -21.110 -21.789 -6.296 3.924 0.593 0.393 N26 QDJ 39 QDJ N30 N3 N 0 1 Y N N -17.965 -22.722 -10.020 8.137 1.560 1.270 N30 QDJ 40 QDJ O05 O1 O 0 1 N N N -26.298 -15.130 -9.457 -1.872 2.768 -2.366 O05 QDJ 41 QDJ O07 O2 O 0 1 N N N -27.504 -16.880 -8.604 -1.016 2.824 -0.320 O07 QDJ 42 QDJ O25 O3 O 0 1 N N N -20.292 -19.777 -6.480 2.314 1.105 -1.045 O25 QDJ 43 QDJ S11 S1 S 0 1 N N N -22.319 -17.558 -6.034 0.363 -0.894 -0.558 S11 QDJ 44 QDJ H1 H1 H 0 1 N N N -27.611 -16.696 -11.321 0.577 5.080 -2.598 H1 QDJ 45 QDJ H2 H2 H 0 1 N N N -28.056 -15.385 -12.465 0.435 3.749 -1.424 H2 QDJ 46 QDJ H3 H3 H 0 1 N N N -26.327 -15.780 -12.180 0.610 3.390 -3.158 H3 QDJ 47 QDJ H4 H4 H 0 1 N N N -26.820 -12.522 -10.335 -1.549 6.068 -1.735 H4 QDJ 48 QDJ H5 H5 H 0 1 N N N -25.865 -13.351 -11.611 -3.031 5.084 -1.681 H5 QDJ 49 QDJ H6 H6 H 0 1 N N N -27.594 -12.955 -11.896 -1.691 4.738 -0.561 H6 QDJ 50 QDJ H7 H7 H 0 1 N N N -28.655 -13.756 -9.134 -1.271 3.875 -4.730 H7 QDJ 51 QDJ H8 H8 H 0 1 N N N -29.370 -14.119 -10.741 -2.786 4.579 -4.115 H8 QDJ 52 QDJ H9 H9 H 0 1 N N N -29.062 -15.449 -9.574 -1.304 5.564 -4.170 H9 QDJ 53 QDJ H10 H10 H 0 1 N N N -23.705 -16.389 -9.605 -2.304 -0.622 0.454 H10 QDJ 54 QDJ H11 H11 H 0 1 N N N -22.072 -15.910 -7.972 0.113 1.239 0.530 H11 QDJ 55 QDJ H12 H12 H 0 1 N N N -22.549 -19.661 -4.671 2.138 -1.269 1.025 H12 QDJ 56 QDJ H13 H13 H 0 1 N N N -24.212 -19.967 -7.204 2.670 -1.907 -1.911 H13 QDJ 57 QDJ H14 H14 H 0 1 N N N -23.969 -21.294 -6.018 3.859 -2.115 -0.603 H14 QDJ 58 QDJ H15 H15 H 0 1 N N N -23.181 -18.941 -3.671 0.986 -2.250 -2.598 H15 QDJ 59 QDJ H16 H16 H 0 1 N N N -23.314 -17.764 -1.484 -0.883 -3.163 -3.864 H16 QDJ 60 QDJ H17 H17 H 0 1 N N N -25.517 -17.069 -0.549 -1.842 -5.353 -3.293 H17 QDJ 61 QDJ H18 H18 H 0 1 N N N -27.624 -17.616 -1.795 -0.947 -6.665 -1.447 H18 QDJ 62 QDJ H19 H19 H 0 1 N N N -28.779 -18.595 -3.685 0.694 -6.903 0.398 H19 QDJ 63 QDJ H20 H20 H 0 1 N N N -28.739 -19.795 -5.893 2.565 -5.990 1.663 H20 QDJ 64 QDJ H21 H21 H 0 1 N N N -26.566 -20.488 -6.914 3.526 -3.803 1.090 H21 QDJ 65 QDJ H22 H22 H 0 1 N N N -19.682 -23.313 -6.296 3.920 2.690 0.438 H22 QDJ 66 QDJ H23 H23 H 0 1 N N N -19.027 -21.640 -6.266 4.868 1.964 -0.882 H23 QDJ 67 QDJ H24 H24 H 0 1 N N N -17.420 -22.687 -8.004 7.101 1.090 -0.467 H24 QDJ 68 QDJ H25 H25 H 0 1 N N N -18.730 -22.694 -11.982 9.033 2.085 3.069 H25 QDJ 69 QDJ H26 H26 H 0 1 N N N -21.077 -22.284 -11.259 6.937 2.927 4.050 H26 QDJ 70 QDJ H27 H27 H 0 1 N N N -21.573 -22.128 -8.823 4.846 2.842 2.707 H27 QDJ 71 QDJ H28 H28 H 0 1 N N N -23.805 -19.030 -9.841 -2.219 0.840 2.491 H28 QDJ 72 QDJ H29 H29 H 0 1 N N N -22.754 -19.040 -8.384 -2.084 2.261 1.428 H29 QDJ 73 QDJ H30 H30 H 0 1 N N N -21.104 -17.739 -7.728 -3.093 -0.915 2.658 H30 QDJ 74 QDJ H31 H31 H 0 1 N N N -18.896 -17.122 -6.777 -4.498 -2.708 3.520 H31 QDJ 75 QDJ H32 H32 H 0 1 N N N -16.919 -17.116 -8.251 -6.938 -2.641 3.241 H32 QDJ 76 QDJ H33 H33 H 0 1 N N N -17.154 -17.727 -10.651 -8.014 -0.780 2.095 H33 QDJ 77 QDJ H34 H34 H 0 1 N N N -18.492 -18.409 -12.567 -7.819 1.387 0.905 H34 QDJ 78 QDJ H35 H35 H 0 1 N N N -20.755 -19.029 -13.491 -6.415 3.181 0.044 H35 QDJ 79 QDJ H36 H36 H 0 1 N N N -22.777 -19.065 -12.013 -3.974 3.116 0.327 H36 QDJ 80 QDJ H37 H37 H 0 1 N N N -25.408 -18.008 -7.747 -2.607 0.487 -1.562 H37 QDJ 81 QDJ H38 H38 H 0 1 N N N -21.853 -22.422 -6.079 4.300 -0.048 1.016 H38 QDJ 82 QDJ H39 H39 H 0 1 N N N -23.627 -15.645 -7.113 -0.160 -0.111 1.658 H39 QDJ 83 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QDJ C43 C42 DOUB Y N 1 QDJ C43 C44 SING Y N 2 QDJ C42 C41 SING Y N 3 QDJ C01 C02 SING N N 4 QDJ C44 C35 DOUB Y N 5 QDJ C03 C02 SING N N 6 QDJ C31 C32 DOUB Y N 7 QDJ C31 N30 SING Y N 8 QDJ C02 C04 SING N N 9 QDJ C02 O05 SING N N 10 QDJ C32 C33 SING Y N 11 QDJ C41 C40 DOUB Y N 12 QDJ C41 C36 SING Y N 13 QDJ C35 C36 SING Y N 14 QDJ C35 C34 SING N N 15 QDJ N30 C29 DOUB Y N 16 QDJ C40 C39 SING Y N 17 QDJ C36 C37 DOUB Y N 18 QDJ O05 C06 SING N N 19 QDJ C34 C09 SING N N 20 QDJ C33 C28 DOUB Y N 21 QDJ C06 O07 DOUB N N 22 QDJ C06 N08 SING N N 23 QDJ C09 N08 SING N N 24 QDJ C09 C10 SING N N 25 QDJ C29 C28 SING Y N 26 QDJ C39 C38 DOUB Y N 27 QDJ C37 C38 SING Y N 28 QDJ C28 C27 SING N N 29 QDJ C10 S11 SING N N 30 QDJ C27 N26 SING N N 31 QDJ O25 C24 DOUB N N 32 QDJ N26 C24 SING N N 33 QDJ C24 C12 SING N N 34 QDJ C13 C12 SING N N 35 QDJ C13 C14 SING N N 36 QDJ S11 C12 SING N N 37 QDJ C23 C22 DOUB Y N 38 QDJ C23 C14 SING Y N 39 QDJ C22 C21 SING Y N 40 QDJ C14 C15 DOUB Y N 41 QDJ C21 C20 DOUB Y N 42 QDJ C15 C20 SING Y N 43 QDJ C15 C16 SING Y N 44 QDJ C20 C19 SING Y N 45 QDJ C16 C17 DOUB Y N 46 QDJ C19 C18 DOUB Y N 47 QDJ C17 C18 SING Y N 48 QDJ C01 H1 SING N N 49 QDJ C01 H2 SING N N 50 QDJ C01 H3 SING N N 51 QDJ C03 H4 SING N N 52 QDJ C03 H5 SING N N 53 QDJ C03 H6 SING N N 54 QDJ C04 H7 SING N N 55 QDJ C04 H8 SING N N 56 QDJ C04 H9 SING N N 57 QDJ C09 H10 SING N N 58 QDJ C10 H11 SING N N 59 QDJ C12 H12 SING N N 60 QDJ C13 H13 SING N N 61 QDJ C13 H14 SING N N 62 QDJ C16 H15 SING N N 63 QDJ C17 H16 SING N N 64 QDJ C18 H17 SING N N 65 QDJ C19 H18 SING N N 66 QDJ C21 H19 SING N N 67 QDJ C22 H20 SING N N 68 QDJ C23 H21 SING N N 69 QDJ C27 H22 SING N N 70 QDJ C27 H23 SING N N 71 QDJ C29 H24 SING N N 72 QDJ C31 H25 SING N N 73 QDJ C32 H26 SING N N 74 QDJ C33 H27 SING N N 75 QDJ C34 H28 SING N N 76 QDJ C34 H29 SING N N 77 QDJ C37 H30 SING N N 78 QDJ C38 H31 SING N N 79 QDJ C39 H32 SING N N 80 QDJ C40 H33 SING N N 81 QDJ C42 H34 SING N N 82 QDJ C43 H35 SING N N 83 QDJ C44 H36 SING N N 84 QDJ N08 H37 SING N N 85 QDJ N26 H38 SING N N 86 QDJ C10 H39 SING N N 87 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QDJ SMILES ACDLabs 12.01 "CC(C)(OC(=O)NC(CSC(Cc2c1c(cccc1)ccc2)C(NCc3cnccc3)=O)Cc5c4ccccc4ccc5)C" QDJ InChI InChI 1.03 "InChI=1S/C37H39N3O3S/c1-37(2,3)43-36(42)40-31(21-29-16-8-14-27-12-4-6-18-32(27)29)25-44-34(35(41)39-24-26-11-10-20-38-23-26)22-30-17-9-15-28-13-5-7-19-33(28)30/h4-20,23,31,34H,21-22,24-25H2,1-3H3,(H,39,41)(H,40,42)/t31-,34+/m1/s1" QDJ InChIKey InChI 1.03 QMZMGTUKKSNABX-FJQKOURKSA-N QDJ SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N[C@@H](CS[C@@H](Cc1cccc2ccccc12)C(=O)NCc3cccnc3)Cc4cccc5ccccc45" QDJ SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1cccc2ccccc12)C(=O)NCc3cccnc3)Cc4cccc5ccccc45" QDJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N[C@H](Cc1cccc2c1cccc2)CS[C@@H](Cc3cccc4c3cccc4)C(=O)NCc5cccnc5" QDJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC(Cc1cccc2c1cccc2)CSC(Cc3cccc4c3cccc4)C(=O)NCc5cccnc5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QDJ "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-3-(naphthalen-1-yl)-1-oxo-1-{[(pyridin-3-yl)methyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" QDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl ~{N}-[(2~{R})-1-naphthalen-1-yl-3-[(2~{S})-3-naphthalen-1-yl-1-oxidanylidene-1-(pyridin-3-ylmethylamino)propan-2-yl]sulfanyl-propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QDJ "Create component" 2019-10-17 RCSB QDJ "Initial release" 2020-02-05 RCSB ##