data_QP2 # _chem_comp.id QP2 _chem_comp.name "(4R,5S)-3-{[(3S,5S)-5-({[amino(dihydroxy)methyl]amino}methyl)pyrrolidin-3-yl]sulfanyl}-5-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H28 N4 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "hydrolyzed doripenem" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-14 _chem_comp.pdbx_modified_date 2021-07-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.481 _chem_comp.one_letter_code ? _chem_comp.three_letter_code QP2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ZRG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal QP2 CAC C1 C 0 1 N N N 28.283 13.608 -1.989 -5.250 -2.768 1.533 CAC QP2 1 QP2 CAA C2 C 0 1 N N R 27.983 13.880 -0.470 -5.664 -1.453 0.870 CAA QP2 2 QP2 OAB O1 O 0 1 N N N 27.625 15.221 -0.195 -5.790 -0.436 1.866 OAB QP2 3 QP2 CAD C3 C 0 1 N N S 26.931 12.936 0.119 -4.602 -1.040 -0.150 CAD QP2 4 QP2 CAE C4 C 0 1 N N N 25.532 13.288 -0.329 -5.009 0.255 -0.804 CAE QP2 5 QP2 OBB O2 O 0 1 N N N 25.107 12.621 -1.330 -6.036 0.801 -0.474 OBB QP2 6 QP2 OAF O3 O 0 1 N N N 24.859 14.130 0.362 -4.232 0.802 -1.752 OAF QP2 7 QP2 CAG C5 C 0 1 N N S 27.334 11.481 -0.335 -3.259 -0.853 0.559 CAG QP2 8 QP2 CAI C6 C 0 1 N N R 28.647 10.934 0.263 -2.097 -1.166 -0.400 CAI QP2 9 QP2 CBA C7 C 0 1 N N N 29.055 11.669 1.554 -2.633 -1.570 -1.775 CBA QP2 10 QP2 NAH N1 N 0 1 N N N 26.316 10.457 -0.022 -3.067 0.556 0.928 NAH QP2 11 QP2 CAK C8 C 0 1 N N N 26.947 9.342 0.357 -1.926 1.053 0.277 CAK QP2 12 QP2 CAL C9 C 0 1 N N N 26.270 8.171 0.517 -1.460 2.382 0.417 CAL QP2 13 QP2 OAN O4 O 0 1 N N N 25.073 8.143 0.166 -0.523 2.772 -0.254 OAN QP2 14 QP2 OAM O5 O 0 1 N N N 26.761 7.079 0.956 -2.055 3.216 1.297 OAM QP2 15 QP2 CAJ C10 C 0 1 N N N 28.287 9.565 0.509 -1.324 0.129 -0.495 CAJ QP2 16 QP2 SAO S1 S 0 1 N N N 29.558 8.325 1.076 0.128 0.388 -1.459 SAO QP2 17 QP2 CAP C11 C 0 1 N N S 31.094 8.809 0.282 1.273 -0.727 -0.609 CAP QP2 18 QP2 CAT C12 C 0 1 N N N 32.111 7.601 0.478 2.615 -0.839 -1.379 CAT QP2 19 QP2 CAQ C13 C 0 1 N N N 31.021 8.864 -1.246 1.736 -0.123 0.741 CAQ QP2 20 QP2 NAR N2 N 0 1 N N N 30.866 7.431 -1.611 3.042 -0.762 1.012 NAR QP2 21 QP2 CAS C14 C 0 1 N N S 31.874 6.697 -0.774 3.623 -1.203 -0.269 CAS QP2 22 QP2 CAU C15 C 0 1 N N N 31.401 5.252 -0.428 4.950 -0.481 -0.514 CAU QP2 23 QP2 NAV N3 N 0 1 N N N 32.191 4.597 0.647 5.855 -0.724 0.618 NAV QP2 24 QP2 CAW C16 C 0 1 N N N 32.149 3.098 0.783 7.142 -0.044 0.417 CAW QP2 25 QP2 OAX O6 O 0 1 N N N 31.633 2.450 -0.401 7.996 -0.301 1.534 OAX QP2 26 QP2 OAY O7 O 0 1 N N N 31.378 2.679 1.925 7.758 -0.534 -0.776 OAY QP2 27 QP2 NAZ N4 N 0 1 N N N 33.507 2.643 1.039 6.918 1.402 0.294 NAZ QP2 28 QP2 H1 H1 H 0 1 N N N 28.553 12.551 -2.126 -6.007 -3.063 2.260 H1 QP2 29 QP2 H2 H2 H 0 1 N N N 27.388 13.838 -2.586 -5.155 -3.544 0.774 H2 QP2 30 QP2 H3 H3 H 0 1 N N N 29.117 14.245 -2.318 -4.294 -2.635 2.039 H3 QP2 31 QP2 H4 H4 H 0 1 N N N 28.921 13.669 0.064 -6.621 -1.587 0.364 H4 QP2 32 QP2 H5 H5 H 0 1 N N N 27.457 15.320 0.735 -6.448 -0.632 2.547 H5 QP2 33 QP2 H6 H6 H 0 1 N N N 26.983 12.984 1.217 -4.506 -1.816 -0.910 H6 QP2 34 QP2 H7 H7 H 0 1 N N N 23.976 14.190 0.016 -4.496 1.670 -2.089 H7 QP2 35 QP2 H8 H8 H 0 1 N N N 27.461 11.512 -1.427 -3.206 -1.488 1.444 H8 QP2 36 QP2 H9 H9 H 0 1 N N N 29.455 11.008 -0.480 -1.467 -1.955 0.010 H9 QP2 37 QP2 H10 H10 H 0 1 N N N 29.993 11.243 1.938 -3.281 -0.781 -2.158 H10 QP2 38 QP2 H11 H11 H 0 1 N N N 29.200 12.738 1.337 -1.799 -1.720 -2.460 H11 QP2 39 QP2 H12 H12 H 0 1 N N N 28.263 11.552 2.308 -3.202 -2.495 -1.685 H12 QP2 40 QP2 H13 H13 H 0 1 N N N 25.727 10.781 0.718 -3.638 1.063 1.526 H13 QP2 41 QP2 H14 H14 H 0 1 N N N 26.095 6.402 0.938 -1.668 4.102 1.322 H14 QP2 42 QP2 H15 H15 H 0 1 N N N 31.464 9.742 0.732 0.823 -1.709 -0.464 H15 QP2 43 QP2 H16 H16 H 0 1 N N N 31.890 7.051 1.404 2.565 -1.629 -2.128 H16 QP2 44 QP2 H17 H17 H 0 1 N N N 33.149 7.965 0.506 2.874 0.113 -1.842 H17 QP2 45 QP2 H18 H18 H 0 1 N N N 31.943 9.286 -1.673 1.853 0.957 0.653 H18 QP2 46 QP2 H19 H19 H 0 1 N N N 30.157 9.456 -1.582 1.023 -0.364 1.529 H19 QP2 47 QP2 H20 H20 H 0 1 N N N 29.941 7.115 -1.402 3.662 -0.127 1.492 H20 QP2 48 QP2 H22 H22 H 0 1 N N N 32.819 6.626 -1.332 3.786 -2.281 -0.251 H22 QP2 49 QP2 H23 H23 H 0 1 N N N 30.351 5.300 -0.105 5.405 -0.858 -1.430 H23 QP2 50 QP2 H24 H24 H 0 1 N N N 31.477 4.637 -1.337 4.769 0.589 -0.612 H24 QP2 51 QP2 H25 H25 H 0 1 N N N 33.147 4.850 0.502 5.430 -0.442 1.488 H25 QP2 52 QP2 H27 H27 H 0 1 N N N 31.625 1.509 -0.270 8.865 0.118 1.469 H27 QP2 53 QP2 H28 H28 H 0 1 N N N 31.713 3.102 2.707 7.936 -1.484 -0.765 H28 QP2 54 QP2 H29 H29 H 0 1 N N N 33.861 3.093 1.859 6.371 1.615 -0.526 H29 QP2 55 QP2 H30 H30 H 0 1 N N N 33.506 1.653 1.177 6.483 1.773 1.125 H30 QP2 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal QP2 CAC CAA SING N N 1 QP2 NAR CAQ SING N N 2 QP2 NAR CAS SING N N 3 QP2 OBB CAE DOUB N N 4 QP2 CAQ CAP SING N N 5 QP2 CAS CAU SING N N 6 QP2 CAS CAT SING N N 7 QP2 CAA OAB SING N N 8 QP2 CAA CAD SING N N 9 QP2 CAU NAV SING N N 10 QP2 OAX CAW SING N N 11 QP2 CAG NAH SING N N 12 QP2 CAG CAD SING N N 13 QP2 CAG CAI SING N N 14 QP2 CAE CAD SING N N 15 QP2 CAE OAF SING N N 16 QP2 NAH CAK SING N N 17 QP2 OAN CAL DOUB N N 18 QP2 CAI CAJ SING N N 19 QP2 CAI CBA SING N N 20 QP2 CAP CAT SING N N 21 QP2 CAP SAO SING N N 22 QP2 CAK CAJ DOUB N N 23 QP2 CAK CAL SING N N 24 QP2 CAJ SAO SING N N 25 QP2 CAL OAM SING N N 26 QP2 NAV CAW SING N N 27 QP2 CAW NAZ SING N N 28 QP2 CAW OAY SING N N 29 QP2 CAC H1 SING N N 30 QP2 CAC H2 SING N N 31 QP2 CAC H3 SING N N 32 QP2 CAA H4 SING N N 33 QP2 OAB H5 SING N N 34 QP2 CAD H6 SING N N 35 QP2 OAF H7 SING N N 36 QP2 CAG H8 SING N N 37 QP2 CAI H9 SING N N 38 QP2 CBA H10 SING N N 39 QP2 CBA H11 SING N N 40 QP2 CBA H12 SING N N 41 QP2 NAH H13 SING N N 42 QP2 OAM H14 SING N N 43 QP2 CAP H15 SING N N 44 QP2 CAT H16 SING N N 45 QP2 CAT H17 SING N N 46 QP2 CAQ H18 SING N N 47 QP2 CAQ H19 SING N N 48 QP2 NAR H20 SING N N 49 QP2 CAS H22 SING N N 50 QP2 CAU H23 SING N N 51 QP2 CAU H24 SING N N 52 QP2 NAV H25 SING N N 53 QP2 OAX H27 SING N N 54 QP2 OAY H28 SING N N 55 QP2 NAZ H29 SING N N 56 QP2 NAZ H30 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor QP2 InChI InChI 1.03 "InChI=1S/C16H28N4O7S/c1-6-11(10(7(2)21)14(22)23)20-12(15(24)25)13(6)28-9-3-8(18-5-9)4-19-16(17,26)27/h6-11,18-21,26-27H,3-5,17H2,1-2H3,(H,22,23)(H,24,25)/t6-,7-,8+,9+,10-,11-/m1/s1" QP2 InChIKey InChI 1.03 VAWRCDOEVLBCMW-VFZPANTDSA-N QP2 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H]([C@@H]1NC(=C(S[C@@H]2CN[C@H](CNC(N)(O)O)C2)[C@@H]1C)C(O)=O)C(O)=O" QP2 SMILES CACTVS 3.385 "C[CH](O)[CH]([CH]1NC(=C(S[CH]2CN[CH](CNC(N)(O)O)C2)[CH]1C)C(O)=O)C(O)=O" QP2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H](NC(=C1S[C@H]2C[C@H](NC2)CNC(N)(O)O)C(=O)O)[C@@H]([C@@H](C)O)C(=O)O" QP2 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(NC(=C1SC2CC(NC2)CNC(N)(O)O)C(=O)O)C(C(C)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier QP2 "SYSTEMATIC NAME" ACDLabs 12.01 "(4R,5S)-3-{[(3S,5S)-5-({[amino(dihydroxy)methyl]amino}methyl)pyrrolidin-3-yl]sulfanyl}-5-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid" QP2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R})-4-[(3~{S},5~{S})-5-[[[azanyl-bis(oxidanyl)methyl]amino]methyl]pyrrolidin-3-yl]sulfanyl-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-3-methyl-2,3-dihydro-1~{H}-pyrrole-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site QP2 "Create component" 2020-07-14 PDBE QP2 "Modify synonyms" 2021-03-01 PDBE QP2 "Other modification" 2021-03-03 PDBE QP2 "Create component" 2021-07-16 RCSB QP2 "Initial release" 2021-07-21 RCSB QP2 "Other modification" 2021-07-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id QP2 _pdbx_chem_comp_synonyms.name "hydrolyzed doripenem" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #