data_R0K # _chem_comp.id R0K _chem_comp.name "(2~{S})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]hexanedioic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H18 N2 O7" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-29 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.270 _chem_comp.one_letter_code E _chem_comp.three_letter_code R0K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EIN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R0K C1 C1 C 0 1 N N N N N N -30.042 16.382 -34.274 -4.795 2.320 -0.041 C1 R0K 1 R0K O1 O1 O 0 1 N N N N N N -29.878 15.179 -34.641 -3.931 2.949 0.522 O1 R0K 2 R0K O2 O2 O 0 1 N N N N N N -30.214 16.701 -33.077 -5.945 2.920 -0.387 O2 R0K 3 R0K O3 O3 O 0 1 N N N N N N -34.438 19.166 -35.910 -0.542 -3.381 -0.597 O3 R0K 4 R0K C2 C2 C 0 1 N N N N N N -30.052 17.476 -35.312 -4.581 0.863 -0.360 C2 R0K 5 R0K C6 C6 C 0 1 N N N N N N -33.650 19.905 -35.281 -1.434 -2.966 0.104 C6 R0K 6 R0K C5 C5 C 0 1 N N S N N N -32.483 20.443 -36.073 -1.601 -1.482 0.312 C5 R0K 7 R0K C4 C4 C 0 1 N N N N N N -31.441 19.352 -36.292 -2.982 -1.049 -0.186 C4 R0K 8 R0K C3 C3 C 0 1 N N N N N N -31.241 18.413 -35.106 -3.200 0.430 0.138 C3 R0K 9 R0K N1 N1 N 0 1 N N N N N N -31.930 21.585 -35.366 -0.566 -0.765 -0.436 N1 R0K 10 R0K O4 O4 O 0 1 N N N N N N -33.806 20.191 -34.064 -2.277 -3.825 0.698 O4 R0K 11 R0K N N N 0 1 N N N Y Y N -31.408 25.498 -37.517 4.441 0.215 -1.790 N R0K 12 R0K CA CA C 0 1 N N S Y N N -31.020 25.952 -36.165 4.073 0.990 -0.598 CA R0K 13 R0K C C C 0 1 N N N Y N Y -30.197 27.220 -36.241 5.287 1.174 0.276 C R0K 14 R0K OXT O O 0 1 N Y N Y N Y -30.337 28.080 -35.371 5.314 2.157 1.190 O R0K 15 R0K CB CB C 0 1 N N N N N N -30.215 24.890 -35.396 2.992 0.241 0.184 CB R0K 16 R0K CG CG C 0 1 N N N N N N -31.070 23.755 -34.852 1.716 0.163 -0.658 CG R0K 17 R0K CD CD C 0 1 N N N N N N -31.388 22.641 -35.860 0.651 -0.574 0.111 CD R0K 18 R0K OE1 OE1 O 0 1 N N N N N N -31.218 22.847 -37.091 0.889 -0.996 1.223 OE1 R0K 19 R0K O OXT O 0 1 N N N Y N Y -29.402 27.389 -37.170 6.237 0.437 0.154 OXT R0K 20 R0K H1 H1 H 0 1 N N N N N N -30.199 15.921 -32.535 -6.035 3.857 -0.165 H1 R0K 21 R0K H20 H2 H 0 1 N N N N N N -30.120 17.023 -36.312 -5.348 0.266 0.133 H2 R0K 22 R0K H3 H3 H 0 1 N N N N N N -29.120 18.055 -35.234 -4.641 0.714 -1.438 H3 R0K 23 R0K H4 H4 H 0 1 N N N N N N -32.851 20.770 -37.057 -1.509 -1.251 1.373 H4 R0K 24 R0K H5 H5 H 0 1 N N N N N N -31.753 18.749 -37.157 -3.043 -1.198 -1.264 H5 R0K 25 R0K H6 H6 H 0 1 N N N N N N -30.478 19.837 -36.511 -3.749 -1.646 0.307 H6 R0K 26 R0K H7 H7 H 0 1 N N N N N N -31.066 19.015 -34.202 -2.432 1.027 -0.355 H7 R0K 27 R0K H8 H8 H 0 1 N N N N N N -32.151 17.809 -34.974 -3.139 0.579 1.216 H8 R0K 28 R0K H9 H9 H 0 1 N N N N N N -31.977 21.545 -34.368 -0.756 -0.427 -1.325 H9 R0K 29 R0K H10 H10 H 0 1 N N N N N N -34.589 19.764 -33.736 -2.131 -4.767 0.535 H10 R0K 30 R0K H H11 H 0 1 N N N Y Y N -31.950 24.661 -37.445 5.107 0.719 -2.357 H11 R0K 31 R0K H2 H12 H 0 1 N Y N Y Y N -31.951 26.209 -37.964 4.797 -0.693 -1.535 H12 R0K 32 R0K HA H14 H 0 1 N N N Y N N -31.933 26.168 -35.590 3.693 1.965 -0.901 H14 R0K 33 R0K HXT H15 H 0 1 N Y N Y N Y -29.763 28.814 -35.556 6.114 2.236 1.727 H15 R0K 34 R0K H16 H16 H 0 1 N N N N N N -29.463 24.464 -36.076 3.339 -0.767 0.410 H16 R0K 35 R0K H17 H17 H 0 1 N N N N N N -29.710 25.381 -34.551 2.782 0.771 1.113 H17 R0K 36 R0K H18 H18 H 0 1 N N N N N N -32.022 24.182 -34.504 1.369 1.171 -0.885 H18 R0K 37 R0K H19 H19 H 0 1 N N N N N N -30.537 23.304 -34.002 1.926 -0.366 -1.587 H19 R0K 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R0K N CA SING N N 1 R0K O C DOUB N N 2 R0K OE1 CD DOUB N N 3 R0K C4 C5 SING N N 4 R0K C4 C3 SING N N 5 R0K C CA SING N N 6 R0K C OXT SING N N 7 R0K CA CB SING N N 8 R0K C5 N1 SING N N 9 R0K C5 C6 SING N N 10 R0K O3 C6 DOUB N N 11 R0K CD N1 SING N N 12 R0K CD CG SING N N 13 R0K CB CG SING N N 14 R0K C2 C3 SING N N 15 R0K C2 C1 SING N N 16 R0K C6 O4 SING N N 17 R0K O1 C1 DOUB N N 18 R0K C1 O2 SING N N 19 R0K O2 H1 SING N N 20 R0K C2 H20 SING N N 21 R0K C2 H3 SING N N 22 R0K C5 H4 SING N N 23 R0K C4 H5 SING N N 24 R0K C4 H6 SING N N 25 R0K C3 H7 SING N N 26 R0K C3 H8 SING N N 27 R0K N1 H9 SING N N 28 R0K O4 H10 SING N N 29 R0K N H SING N N 30 R0K N H2 SING N N 31 R0K CA HA SING N N 32 R0K OXT HXT SING N N 33 R0K CB H16 SING N N 34 R0K CB H17 SING N N 35 R0K CG H18 SING N N 36 R0K CG H19 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R0K InChI InChI 1.06 "InChI=1S/C11H18N2O7/c12-6(10(17)18)4-5-8(14)13-7(11(19)20)2-1-3-9(15)16/h6-7H,1-5,12H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)/t6-,7-/m0/s1" R0K InChIKey InChI 1.06 BNHWWOOHGADOAL-BQBZGAKWSA-N R0K SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)N[C@@H](CCCC(O)=O)C(O)=O)C(O)=O" R0K SMILES CACTVS 3.385 "N[CH](CCC(=O)N[CH](CCCC(O)=O)C(O)=O)C(O)=O" R0K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C[C@@H](C(=O)O)NC(=O)CC[C@@H](C(=O)O)N)CC(=O)O" R0K SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(C(=O)O)NC(=O)CCC(C(=O)O)N)CC(=O)O" # _pdbx_chem_comp_identifier.comp_id R0K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]hexanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R0K "Create component" 2023-03-29 PDBJ R0K "Initial release" 2023-04-05 RCSB R0K "Modify backbone" 2023-11-03 PDBE #