data_R10 # _chem_comp.id R10 _chem_comp.name "5-O-phosphono-D-ribonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C5 H11 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-06-10 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.109 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R10 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VVQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R10 O2 O2 O 0 1 N N N 23.266 -9.094 13.706 -4.386 -1.574 0.152 O2 R10 1 R10 C5 C5 C 0 1 N N N 23.726 -7.704 13.304 -4.140 -0.273 -0.070 C5 R10 2 R10 O1 O1 O 0 1 N N N 23.333 -7.400 12.165 -4.915 0.384 -0.724 O1 R10 3 R10 O3 O3 O 0 1 N N N 25.205 -5.799 13.552 -2.921 1.770 0.225 O3 R10 4 R10 C3 C3 C 0 1 N N R 26.202 -8.026 13.879 -1.662 -0.258 -0.150 C3 R10 5 R10 O4 O4 O 0 1 N N N 26.307 -8.723 12.620 -1.640 -1.661 0.121 O4 R10 6 R10 C2 C2 C 0 1 N N R 26.180 -9.129 14.968 -0.402 0.392 0.425 C2 R10 7 R10 O5 O5 O 0 1 N N N 26.110 -8.566 16.282 -0.424 1.795 0.154 O5 R10 8 R10 C1 C1 C 0 1 N N N 27.373 -10.072 14.864 0.835 -0.234 -0.222 C1 R10 9 R10 C4 C4 C 0 1 N N R 24.941 -7.132 14.004 -2.899 0.367 0.496 C4 R10 10 R10 O6 O6 O 0 1 N N N 27.332 -11.111 15.854 2.012 0.289 0.397 O6 R10 11 R10 P1 P1 P 0 1 N N N 28.596 -12.061 16.146 3.500 -0.150 -0.035 P1 R10 12 R10 O9 O9 O 0 1 N N N 28.873 -12.755 14.857 3.622 -1.623 0.046 O9 R10 13 R10 O7 O7 O 0 1 N N N 28.024 -12.917 17.235 3.783 0.330 -1.546 O7 R10 14 R10 O8 O8 O 0 1 N N N 29.802 -11.258 16.521 4.570 0.533 0.954 O8 R10 15 R10 H7 H7 H 0 1 N N N 27.903 -13.802 16.912 3.720 1.286 -1.673 H7 R10 16 R10 H8 H8 H 0 1 N N N 30.323 -11.088 15.745 5.490 0.312 0.752 H8 R10 17 R10 H1C1 1H1C H 0 0 N N N 28.294 -9.488 15.007 0.806 -1.315 -0.091 H1C1 R10 18 R10 H1C2 2H1C H 0 0 N N N 27.344 -10.547 13.872 0.848 0.004 -1.286 H1C2 R10 19 R10 H2 H2 H 0 1 N N N 25.270 -9.721 14.789 -0.370 0.230 1.502 H2 R10 20 R10 H5 H5 H 0 1 N N N 26.094 -9.264 16.926 -0.453 2.013 -0.788 H5 R10 21 R10 H3 H3 H 0 1 N N N 27.049 -7.332 13.979 -1.694 -0.097 -1.228 H3 R10 22 R10 H4 H4 H 0 1 N N N 26.330 -8.093 11.910 -1.611 -1.879 1.062 H4 R10 23 R10 HA HA H 0 1 N N N 24.697 -7.103 15.076 -2.867 0.206 1.574 HA R10 24 R10 HB HB H 0 1 N N N 25.263 -5.216 14.300 -2.950 1.988 -0.716 HB R10 25 R10 HC HC H 0 1 N N N 22.757 -9.476 13.001 -5.194 -1.940 -0.232 HC R10 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R10 O9 P1 DOUB N N 1 R10 P1 O7 SING N N 2 R10 P1 O8 SING N N 3 R10 P1 O6 SING N N 4 R10 O6 C1 SING N N 5 R10 C1 C2 SING N N 6 R10 C2 O5 SING N N 7 R10 C2 C3 SING N N 8 R10 C3 O4 SING N N 9 R10 C3 C4 SING N N 10 R10 C4 O3 SING N N 11 R10 C4 C5 SING N N 12 R10 C5 O1 DOUB N N 13 R10 C5 O2 SING N N 14 R10 O7 H7 SING N N 15 R10 O8 H8 SING N N 16 R10 C1 H1C1 SING N N 17 R10 C1 H1C2 SING N N 18 R10 C2 H2 SING N N 19 R10 O5 H5 SING N N 20 R10 C3 H3 SING N N 21 R10 O4 H4 SING N N 22 R10 C4 HA SING N N 23 R10 O3 HB SING N N 24 R10 O2 HC SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R10 SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(O)C(=O)O" R10 SMILES_CANONICAL CACTVS 3.341 "O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H](O)C(O)=O" R10 SMILES CACTVS 3.341 "O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)C(O)=O" R10 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@H]([C@H](C(=O)O)O)O)O)OP(=O)(O)O" R10 SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(C(=O)O)O)O)O)OP(=O)(O)O" R10 InChI InChI 1.03 "InChI=1S/C5H11O9P/c6-2(1-14-15(11,12)13)3(7)4(8)5(9)10/h2-4,6-8H,1H2,(H,9,10)(H2,11,12,13)/t2-,3-,4-/m1/s1" R10 InChIKey InChI 1.03 HNECGPFIYSOYHF-BXXZVTAOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier R10 "SYSTEMATIC NAME" ACDLabs 10.04 "5-O-phosphono-D-ribonic acid" R10 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R)-2,3,4-trihydroxy-5-phosphonooxy-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R10 "Create component" 2008-06-10 EBI R10 "Modify descriptor" 2011-06-04 RCSB #