data_R6K # _chem_comp.id R6K _chem_comp.name "2-azanyl-~{N}-[(1~{S},2~{S})-2-[[4-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]phenyl]methoxy]cyclopentyl]-5-(1-methylpyrazol-4-yl)pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H41 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-07 _chem_comp.pdbx_modified_date 2020-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 579.735 _chem_comp.one_letter_code ? _chem_comp.three_letter_code R6K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AAZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal R6K C1 C1 C 0 1 N N N -9.743 22.755 7.703 10.424 1.911 2.040 C1 R6K 1 R6K C2 C2 C 0 1 N N N -10.224 23.822 6.713 10.009 2.183 0.592 C2 R6K 2 R6K C3 C3 C 0 1 N N N -9.471 25.439 5.039 8.287 1.763 -1.058 C3 R6K 3 R6K N6 N1 N 0 1 Y N N 5.175 27.705 -8.538 -8.231 3.856 -1.414 N6 R6K 4 R6K C7 C4 C 0 1 Y N N -5.989 26.764 2.830 4.334 0.216 -1.564 C7 R6K 5 R6K C8 C5 C 0 1 Y N N -6.878 27.682 3.390 4.522 1.514 -1.095 C8 R6K 6 R6K C9 C6 C 0 1 Y N N -7.992 27.258 4.096 5.800 2.008 -0.933 C9 R6K 7 R6K C10 C7 C 0 1 Y N N -4.793 27.207 2.072 2.962 -0.319 -1.746 C10 R6K 8 R6K C11 C8 C 0 1 Y N N -4.138 26.341 1.207 2.774 -1.618 -2.215 C11 R6K 9 R6K C12 C9 C 0 1 Y N N -3.026 26.744 0.499 1.495 -2.112 -2.377 C12 R6K 10 R6K C13 C10 C 0 1 Y N N -2.525 28.026 0.625 0.402 -1.321 -2.074 C13 R6K 11 R6K C14 C11 C 0 1 N N N -1.316 28.433 -0.158 -0.992 -1.867 -2.251 C14 R6K 12 R6K C15 C12 C 0 1 N N S 0.878 27.721 -0.775 -2.730 -3.053 -1.104 C15 R6K 13 R6K C16 C13 C 0 1 N N N 2.131 27.190 -0.081 -2.662 -4.523 -1.555 C16 R6K 14 R6K C19 C14 C 0 1 N N S 0.685 26.818 -2.026 -3.370 -3.052 0.300 C19 R6K 15 R6K C20 C15 C 0 1 N N N 0.505 28.552 -3.713 -4.581 -1.458 1.689 C20 R6K 16 R6K C21 C16 C 0 1 Y N N 1.111 29.332 -4.843 -5.476 -0.297 1.847 C21 R6K 17 R6K C22 C17 C 0 1 Y N N 2.070 28.766 -5.693 -5.899 0.431 0.732 C22 R6K 18 R6K C24 C18 C 0 1 Y N N 2.167 30.832 -6.888 -7.138 1.844 2.233 C24 R6K 19 R6K C27 C19 C 0 1 Y N N 4.652 29.743 -8.311 -6.898 2.116 -1.571 C27 R6K 20 R6K C30 C20 C 0 1 Y N N -3.169 28.900 1.485 0.582 -0.031 -1.607 C30 R6K 21 R6K C31 C21 C 0 1 Y N N -4.287 28.499 2.198 1.857 0.473 -1.442 C31 R6K 22 R6K C32 C22 C 0 1 N N N -8.292 25.116 7.148 8.926 0.020 0.498 C32 R6K 23 R6K C33 C23 C 0 1 N N N -7.766 24.074 8.081 9.340 -0.251 1.946 C33 R6K 24 R6K O1 O1 O 0 1 N N N -0.593 28.882 -3.259 -4.133 -2.019 2.671 O1 R6K 25 R6K C25 C24 C 0 1 Y N N 0.717 30.699 -5.086 -5.923 0.092 3.122 C25 R6K 26 R6K N4 N2 N 0 1 N N N -0.193 31.295 -4.309 -5.519 -0.620 4.237 N4 R6K 27 R6K N3 N3 N 0 1 Y N N 1.254 31.413 -6.100 -6.727 1.135 3.265 N3 R6K 28 R6K C23 C25 C 0 1 Y N N 2.608 29.525 -6.732 -6.745 1.520 0.936 C23 R6K 29 R6K C26 C26 C 0 1 Y N N 3.732 29.014 -7.547 -7.217 2.330 -0.216 C26 R6K 30 R6K C29 C27 C 0 1 Y N N 4.109 27.703 -7.724 -8.038 3.418 -0.153 C29 R6K 31 R6K C28 C28 C 0 1 N N N 5.933 26.557 -9.020 -9.050 5.005 -1.808 C28 R6K 32 R6K N5 N4 N 0 1 Y N N 5.530 28.955 -8.914 -7.509 3.027 -2.281 N5 R6K 33 R6K N2 N5 N 0 1 N N N 1.178 27.503 -3.215 -4.259 -1.899 0.457 N2 R6K 34 R6K C18 C29 C 0 1 N N N 1.422 25.505 -1.723 -4.180 -4.372 0.348 C18 R6K 35 R6K C17 C30 C 0 1 N N N 2.223 25.725 -0.480 -3.263 -5.363 -0.410 C17 R6K 36 R6K O O2 O 0 1 N N N -0.214 27.592 0.133 -1.414 -2.499 -1.041 O R6K 37 R6K C6 C31 C 0 1 Y N N -6.264 25.410 3.009 5.439 -0.577 -1.868 C6 R6K 38 R6K C5 C32 C 0 1 Y N N -7.379 24.992 3.716 6.713 -0.072 -1.703 C5 R6K 39 R6K C4 C33 C 0 1 Y N N -8.259 25.910 4.270 6.894 1.217 -1.236 C4 R6K 40 R6K N1 N6 N 0 1 N N N -9.075 24.478 6.085 8.759 1.467 0.301 N1 R6K 41 R6K N N7 N 0 1 N N N -8.860 23.340 8.721 10.591 0.465 2.237 N R6K 42 R6K C C34 C 0 1 N N N -8.336 22.301 9.604 11.062 0.169 3.596 C R6K 43 R6K H1 H1 H 0 1 N N N -10.616 22.306 8.199 11.366 2.418 2.250 H1 R6K 44 R6K H2 H2 H 0 1 N N N -9.193 21.977 7.154 9.653 2.284 2.715 H2 R6K 45 R6K H3 H3 H 0 1 N N N -10.823 24.572 7.249 9.857 3.253 0.452 H3 R6K 46 R6K H4 H4 H 0 1 N N N -10.841 23.346 5.936 10.793 1.835 -0.082 H4 R6K 47 R6K H5 H5 H 0 1 N N N -9.961 26.305 5.509 8.955 1.298 -1.784 H5 R6K 48 R6K H6 H6 H 0 1 N N N -10.173 24.952 4.346 8.278 2.842 -1.213 H6 R6K 49 R6K H7 H7 H 0 1 N N N -6.695 28.740 3.271 3.669 2.132 -0.858 H7 R6K 50 R6K H8 H8 H 0 1 N N N -8.664 27.991 4.518 5.947 3.014 -0.569 H8 R6K 51 R6K H9 H9 H 0 1 N N N -4.506 25.333 1.087 3.627 -2.236 -2.452 H9 R6K 52 R6K H10 H10 H 0 1 N N N -2.538 26.046 -0.165 1.349 -3.118 -2.741 H10 R6K 53 R6K H11 H11 H 0 1 N N N -1.054 29.470 0.098 -1.673 -1.051 -2.492 H11 R6K 54 R6K H12 H12 H 0 1 N N N -1.544 28.367 -1.232 -0.996 -2.595 -3.063 H12 R6K 55 R6K H13 H13 H 0 1 N N N 1.029 28.765 -1.087 -3.344 -2.478 -1.796 H13 R6K 56 R6K H14 H14 H 0 1 N N N 3.022 27.738 -0.422 -3.244 -4.661 -2.466 H14 R6K 57 R6K H15 H15 H 0 1 N N N 2.037 27.286 1.011 -1.625 -4.813 -1.727 H15 R6K 58 R6K H16 H16 H 0 1 N N N -0.388 26.603 -2.139 -2.600 -3.049 1.071 H16 R6K 59 R6K H17 H17 H 0 1 N N N 2.391 27.746 -5.544 -5.578 0.157 -0.263 H17 R6K 60 R6K H18 H18 H 0 1 N N N 2.586 31.416 -7.694 -7.793 2.687 2.395 H18 R6K 61 R6K H19 H19 H 0 1 N N N 4.646 30.819 -8.398 -6.265 1.330 -1.956 H19 R6K 62 R6K H20 H20 H 0 1 N N N -2.795 29.906 1.601 -0.275 0.582 -1.373 H20 R6K 63 R6K H21 H21 H 0 1 N N N -4.774 29.198 2.862 1.997 1.479 -1.074 H21 R6K 64 R6K H22 H22 H 0 1 N N N -7.450 25.666 6.702 9.697 -0.352 -0.177 H22 R6K 65 R6K H23 H23 H 0 1 N N N -8.933 25.815 7.705 7.984 -0.486 0.288 H23 R6K 66 R6K H24 H24 H 0 1 N N N -7.142 23.367 7.515 8.557 0.097 2.619 H24 R6K 67 R6K H25 H25 H 0 1 N N N -7.157 24.561 8.857 9.493 -1.321 2.086 H25 R6K 68 R6K H26 H26 H 0 1 N N N -0.338 32.233 -4.624 -4.868 -1.334 4.147 H26 R6K 69 R6K H27 H27 H 0 1 N N N -1.055 30.790 -4.358 -5.887 -0.406 5.109 H27 R6K 70 R6K H28 H28 H 0 1 N N N 3.636 26.835 -7.289 -8.458 3.849 0.743 H28 R6K 71 R6K H29 H29 H 0 1 N N N 6.749 26.903 -9.672 -8.434 5.904 -1.818 H29 R6K 72 R6K H30 H30 H 0 1 N N N 6.355 26.010 -8.164 -9.460 4.835 -2.804 H30 R6K 73 R6K H31 H31 H 0 1 N N N 5.267 25.891 -9.588 -9.866 5.132 -1.096 H31 R6K 74 R6K H32 H32 H 0 1 N N N 2.018 27.191 -3.660 -4.617 -1.452 -0.326 H32 R6K 75 R6K H33 H33 H 0 1 N N N 0.697 24.693 -1.565 -4.330 -4.695 1.378 H33 R6K 76 R6K H34 H34 H 0 1 N N N 2.088 25.245 -2.559 -5.135 -4.258 -0.165 H34 R6K 77 R6K H35 H35 H 0 1 N N N 1.825 25.097 0.331 -3.847 -6.192 -0.812 H35 R6K 78 R6K H36 H36 H 0 1 N N N 3.274 25.460 -0.667 -2.476 -5.733 0.246 H36 R6K 79 R6K H37 H37 H 0 1 N N N -5.596 24.673 2.589 5.299 -1.584 -2.232 H37 R6K 80 R6K H38 H38 H 0 1 N N N -7.566 23.935 3.838 7.570 -0.685 -1.938 H38 R6K 81 R6K H41 H41 H 0 1 N N N -7.678 22.758 10.358 10.337 0.539 4.321 H41 R6K 82 R6K H42 H42 H 0 1 N N N -9.171 21.791 10.106 11.177 -0.909 3.714 H42 R6K 83 R6K H43 H43 H 0 1 N N N -7.764 21.571 9.012 12.023 0.657 3.761 H43 R6K 84 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal R6K C28 N6 SING N N 1 R6K N5 N6 SING Y N 2 R6K N5 C27 DOUB Y N 3 R6K N6 C29 SING Y N 4 R6K C27 C26 SING Y N 5 R6K C29 C26 DOUB Y N 6 R6K C26 C23 SING N N 7 R6K C24 C23 DOUB Y N 8 R6K C24 N3 SING Y N 9 R6K C23 C22 SING Y N 10 R6K N3 C25 DOUB Y N 11 R6K C22 C21 DOUB Y N 12 R6K C25 C21 SING Y N 13 R6K C25 N4 SING N N 14 R6K C21 C20 SING N N 15 R6K C20 O1 DOUB N N 16 R6K C20 N2 SING N N 17 R6K N2 C19 SING N N 18 R6K C19 C18 SING N N 19 R6K C19 C15 SING N N 20 R6K C18 C17 SING N N 21 R6K C15 C16 SING N N 22 R6K C15 O SING N N 23 R6K C17 C16 SING N N 24 R6K C14 O SING N N 25 R6K C14 C13 SING N N 26 R6K C12 C13 DOUB Y N 27 R6K C12 C11 SING Y N 28 R6K C13 C30 SING Y N 29 R6K C11 C10 DOUB Y N 30 R6K C30 C31 DOUB Y N 31 R6K C10 C31 SING Y N 32 R6K C10 C7 SING N N 33 R6K C7 C6 DOUB Y N 34 R6K C7 C8 SING Y N 35 R6K C6 C5 SING Y N 36 R6K C8 C9 DOUB Y N 37 R6K C5 C4 DOUB Y N 38 R6K C9 C4 SING Y N 39 R6K C4 C3 SING N N 40 R6K C3 N1 SING N N 41 R6K N1 C2 SING N N 42 R6K N1 C32 SING N N 43 R6K C2 C1 SING N N 44 R6K C32 C33 SING N N 45 R6K C1 N SING N N 46 R6K C33 N SING N N 47 R6K N C SING N N 48 R6K C1 H1 SING N N 49 R6K C1 H2 SING N N 50 R6K C2 H3 SING N N 51 R6K C2 H4 SING N N 52 R6K C3 H5 SING N N 53 R6K C3 H6 SING N N 54 R6K C8 H7 SING N N 55 R6K C9 H8 SING N N 56 R6K C11 H9 SING N N 57 R6K C12 H10 SING N N 58 R6K C14 H11 SING N N 59 R6K C14 H12 SING N N 60 R6K C15 H13 SING N N 61 R6K C16 H14 SING N N 62 R6K C16 H15 SING N N 63 R6K C19 H16 SING N N 64 R6K C22 H17 SING N N 65 R6K C24 H18 SING N N 66 R6K C27 H19 SING N N 67 R6K C30 H20 SING N N 68 R6K C31 H21 SING N N 69 R6K C32 H22 SING N N 70 R6K C32 H23 SING N N 71 R6K C33 H24 SING N N 72 R6K C33 H25 SING N N 73 R6K N4 H26 SING N N 74 R6K N4 H27 SING N N 75 R6K C29 H28 SING N N 76 R6K C28 H29 SING N N 77 R6K C28 H30 SING N N 78 R6K C28 H31 SING N N 79 R6K N2 H32 SING N N 80 R6K C18 H33 SING N N 81 R6K C18 H34 SING N N 82 R6K C17 H35 SING N N 83 R6K C17 H36 SING N N 84 R6K C6 H37 SING N N 85 R6K C5 H38 SING N N 86 R6K C H41 SING N N 87 R6K C H42 SING N N 88 R6K C H43 SING N N 89 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor R6K InChI InChI 1.03 "InChI=1S/C34H41N7O2/c1-39-14-16-41(17-15-39)21-24-6-10-26(11-7-24)27-12-8-25(9-13-27)23-43-32-5-3-4-31(32)38-34(42)30-18-28(19-36-33(30)35)29-20-37-40(2)22-29/h6-13,18-20,22,31-32H,3-5,14-17,21,23H2,1-2H3,(H2,35,36)(H,38,42)/t31-,32-/m0/s1" R6K InChIKey InChI 1.03 GTVWQFJFCAUNFY-ACHIHNKUSA-N R6K SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)c3ccc(CO[C@H]4CCC[C@@H]4NC(=O)c5cc(cnc5N)c6cnn(C)c6)cc3" R6K SMILES CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)c3ccc(CO[CH]4CCC[CH]4NC(=O)c5cc(cnc5N)c6cnn(C)c6)cc3" R6K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)c2cc(c(nc2)N)C(=O)N[C@H]3CCC[C@@H]3OCc4ccc(cc4)c5ccc(cc5)CN6CCN(CC6)C" R6K SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)c2cc(c(nc2)N)C(=O)NC3CCCC3OCc4ccc(cc4)c5ccc(cc5)CN6CCN(CC6)C" # _pdbx_chem_comp_identifier.comp_id R6K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-~{N}-[(1~{S},2~{S})-2-[[4-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]phenyl]methoxy]cyclopentyl]-5-(1-methylpyrazol-4-yl)pyridine-3-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site R6K "Create component" 2020-09-07 PDBE R6K "Initial release" 2020-11-04 RCSB ##