data_RA8 # _chem_comp.id RA8 _chem_comp.name "N-(BENZYLSULFONYL)-L-LEUCYL-N-(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)-L-PROLINAMIDE" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H38 N6 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-GUANIDINO-4-(N-PHENYLMETHANESULFONYL-L-LEUCYL-L-PROLYLAMINO)BUTANE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-02-03 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.651 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RA8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1YPL _chem_comp.pdbx_subcomponent_list "PMS LEU PRO AG2" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RA8 C27 C27 C 0 1 N N N 18.593 -15.568 26.362 4.546 1.147 -0.438 C PMS 1 RA8 S26 S26 S 0 1 N N N 17.854 -16.682 25.150 4.247 0.451 1.211 S PMS 2 RA8 C30 C30 C 0 1 Y N N 19.836 -14.898 25.795 5.989 1.565 -0.553 C1 PMS 3 RA8 C31 C31 C 0 1 Y N N 20.965 -15.649 25.456 6.934 0.667 -1.014 C2 PMS 4 RA8 C32 C32 C 0 1 Y N N 22.096 -15.016 24.934 8.258 1.050 -1.120 C3 PMS 5 RA8 C33 C33 C 0 1 Y N N 22.100 -13.628 24.755 8.637 2.331 -0.764 C4 PMS 6 RA8 C34 C34 C 0 1 Y N N 20.960 -12.888 25.087 7.692 3.229 -0.303 C5 PMS 7 RA8 C35 C35 C 0 1 Y N N 19.838 -13.513 25.621 6.368 2.847 -0.202 C6 PMS 8 RA8 O15 O15 O 0 1 N N N 16.712 -17.262 25.825 4.343 1.462 2.204 O2S PMS 9 RA8 O29 O29 O 0 1 N N N 18.890 -17.516 24.586 4.927 -0.789 1.359 O1S PMS 10 RA8 N25 N25 N 0 1 N N N 17.387 -15.709 24.098 2.643 0.038 1.200 N LEU 11 RA8 C19 C19 C 0 1 N N S 17.890 -15.341 22.823 2.148 -0.955 0.244 CA LEU 12 RA8 C18 C18 C 0 1 N N N 17.873 -13.960 22.730 0.783 -0.544 -0.245 C LEU 13 RA8 O24 O24 O 0 1 N N N 16.811 -13.401 22.966 0.157 0.308 0.349 O LEU 14 RA8 C20 C20 C 0 1 N N N 17.383 -16.175 21.641 2.056 -2.320 0.928 CB LEU 15 RA8 C21 C21 C 0 1 N N N 17.540 -17.688 21.880 1.256 -2.188 2.225 CG LEU 16 RA8 C22 C22 C 0 1 N N N 17.516 -18.420 20.532 1.512 -3.410 3.110 CD1 LEU 17 RA8 C23 C23 C 0 1 N N N 16.364 -18.186 22.753 -0.236 -2.099 1.898 CD2 LEU 18 RA8 N16 N16 N 0 1 N N N 18.631 -13.427 21.740 0.257 -1.125 -1.342 N PRO 19 RA8 C11 C11 C 0 1 N N S 18.407 -12.060 21.295 -1.003 -0.741 -1.994 CA PRO 20 RA8 C5 C5 C 0 1 N N N 17.085 -11.983 20.570 -2.153 -0.930 -1.037 C PRO 21 RA8 O12 O12 O 0 1 N N N 16.745 -12.906 19.838 -2.048 -1.703 -0.109 O PRO 22 RA8 C13 C13 C 0 1 N N N 19.678 -11.868 20.265 -1.184 -1.661 -3.220 CB PRO 23 RA8 C14 C14 C 0 1 N N N 20.776 -12.913 20.584 0.264 -2.133 -3.516 CG PRO 24 RA8 C17 C17 C 0 1 N N N 20.122 -13.952 21.536 0.851 -2.250 -2.087 CD PRO 25 RA8 N10 N10 N 0 1 N N N 16.441 -10.631 20.515 -3.297 -0.240 -1.214 N AG2 26 RA8 C9 C9 C 0 1 N N N 15.126 -10.724 19.856 -4.414 -0.424 -0.285 CA AG2 27 RA8 C8 C8 C 0 1 N N N 14.140 -9.929 20.752 -5.582 0.469 -0.708 CB AG2 28 RA8 C7 C7 C 0 1 N N N 13.407 -10.915 21.670 -6.749 0.277 0.263 CG AG2 29 RA8 C6 C6 C 0 1 N N N 12.327 -10.148 22.476 -7.917 1.170 -0.161 CD AG2 30 RA8 N4 N4 N 0 1 N N N 11.637 -11.139 23.254 -9.034 0.986 0.769 NE AG2 31 RA8 C2 C2 C 0 1 N N N 10.773 -10.753 24.089 -10.202 1.689 0.589 CZ AG2 32 RA8 N1 N1 N 0 1 N N N 10.595 -9.571 24.535 -10.314 2.520 -0.409 NH1 AG2 33 RA8 N3 N3 N 0 1 N N N 10.175 -11.704 24.707 -11.250 1.517 1.461 NH2 AG2 34 RA8 H271 H271 H 0 0 N N N 17.860 -14.794 26.631 4.324 0.396 -1.195 H2A PMS 35 RA8 H272 H272 H 0 0 N N N 18.873 -16.145 27.255 3.903 2.015 -0.587 H1 PMS 36 RA8 H31 H31 H 0 1 N N N 20.963 -16.720 25.598 6.637 -0.334 -1.292 H2 PMS 37 RA8 H32 H32 H 0 1 N N N 22.967 -15.598 24.669 8.996 0.349 -1.480 H3 PMS 38 RA8 H33 H33 H 0 1 N N N 22.976 -13.132 24.364 9.672 2.630 -0.845 H4 PMS 39 RA8 H34 H34 H 0 1 N N N 20.951 -11.820 24.927 7.989 4.229 -0.024 H5 PMS 40 RA8 H35 H35 H 0 1 N N N 18.973 -12.930 25.900 5.629 3.549 0.155 H6 PMS 41 RA8 H25 H25 H 0 1 N N N 17.405 -14.839 24.591 2.032 0.454 1.828 H LEU 42 RA8 H19 H19 H 0 1 N N N 18.946 -15.635 22.732 2.833 -1.018 -0.602 HA LEU 43 RA8 H201 H201 H 0 0 N N N 16.316 -15.954 21.490 1.557 -3.026 0.264 HB2 LEU 44 RA8 H202 H202 H 0 0 N N N 17.962 -15.901 20.747 3.059 -2.682 1.155 HB3 LEU 45 RA8 H21 H21 H 0 1 N N N 18.494 -17.887 22.390 1.566 -1.286 2.753 HG LEU 46 RA8 H221 H221 H 0 0 N N N 17.628 -19.501 20.699 2.575 -3.473 3.343 HD11 LEU 47 RA8 H222 H222 H 0 0 N N N 16.559 -18.225 20.026 0.942 -3.315 4.034 HD12 LEU 48 RA8 H223 H223 H 0 0 N N N 18.344 -18.059 19.904 1.202 -4.312 2.582 HD13 LEU 49 RA8 H231 H231 H 0 0 N N N 16.469 -19.267 22.928 -0.488 -2.847 1.146 HD21 LEU 50 RA8 H232 H232 H 0 0 N N N 16.373 -17.656 23.717 -0.818 -2.282 2.801 HD22 LEU 51 RA8 H233 H233 H 0 0 N N N 15.414 -17.989 22.235 -0.465 -1.106 1.513 HD23 LEU 52 RA8 H11 H11 H 0 1 N N N 18.358 -11.297 22.086 -0.954 0.300 -2.312 HA PRO 53 RA8 H131 H131 H 0 0 N N N 19.332 -12.007 19.230 -1.824 -2.508 -2.975 HB2 PRO 54 RA8 H132 H132 H 0 0 N N N 20.093 -10.856 20.383 -1.588 -1.102 -4.064 HB3 PRO 55 RA8 H141 H141 H 0 0 N N N 21.638 -12.432 21.070 0.805 -1.390 -4.102 HG2 PRO 56 RA8 H142 H142 H 0 0 N N N 21.126 -13.400 19.662 0.264 -3.100 -4.018 HG3 PRO 57 RA8 H171 H171 H 0 0 N N N 20.659 -14.004 22.495 1.937 -2.155 -2.115 HD2 PRO 58 RA8 H172 H172 H 0 0 N N N 20.131 -14.958 21.091 0.563 -3.198 -1.635 HD3 PRO 59 RA8 H10 H10 H 0 1 N N N 16.844 -9.789 20.873 -3.381 0.378 -1.957 HN1 AG2 60 RA8 H91 H91 H 0 1 N N N 14.810 -11.774 19.769 -4.097 -0.154 0.723 HA1 AG2 61 RA8 H92 H92 H 0 1 N N N 15.167 -10.291 18.846 -4.731 -1.467 -0.299 HA2 AG2 62 RA8 H81 H81 H 0 1 N N N 13.412 -9.397 20.122 -5.899 0.199 -1.715 HB1 AG2 63 RA8 H82 H82 H 0 1 N N N 14.696 -9.199 21.359 -5.266 1.512 -0.694 HB2 AG2 64 RA8 H71 H71 H 0 1 N N N 14.125 -11.378 22.363 -6.432 0.547 1.270 HG1 AG2 65 RA8 H72 H72 H 0 1 N N N 12.929 -11.698 21.064 -7.065 -0.766 0.249 HG2 AG2 66 RA8 H61 H61 H 0 1 N N N 11.630 -9.632 21.799 -8.234 0.900 -1.168 HD1 AG2 67 RA8 H62 H62 H 0 1 N N N 12.792 -9.396 23.130 -7.601 2.213 -0.147 HD2 AG2 68 RA8 HN4 HN4 H 0 1 N N N 11.837 -12.112 23.137 -8.950 0.368 1.512 HE1 AG2 69 RA8 HN1 HN1 H 0 1 N N N 11.244 -8.920 24.141 -9.575 2.642 -1.025 HH11 AG2 70 RA8 HN31 HN31 H 0 0 N N N 10.410 -12.655 24.508 -12.074 2.013 1.334 HH21 AG2 71 RA8 HN32 HN32 H 0 0 N N N 9.474 -11.494 25.388 -11.166 0.899 2.204 HH22 AG2 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RA8 N1 C2 DOUB N N 1 RA8 N1 HN1 SING N N 2 RA8 C2 N3 SING N N 3 RA8 C2 N4 SING N N 4 RA8 N3 HN31 SING N N 5 RA8 N3 HN32 SING N N 6 RA8 N4 C6 SING N N 7 RA8 N4 HN4 SING N N 8 RA8 C6 C7 SING N N 9 RA8 C6 H61 SING N N 10 RA8 C6 H62 SING N N 11 RA8 C7 C8 SING N N 12 RA8 C7 H71 SING N N 13 RA8 C7 H72 SING N N 14 RA8 C8 C9 SING N N 15 RA8 C8 H81 SING N N 16 RA8 C8 H82 SING N N 17 RA8 C9 N10 SING N N 18 RA8 C9 H91 SING N N 19 RA8 C9 H92 SING N N 20 RA8 N10 C5 SING N N 21 RA8 N10 H10 SING N N 22 RA8 C5 O12 DOUB N N 23 RA8 C5 C11 SING N N 24 RA8 C11 N16 SING N N 25 RA8 C11 C13 SING N N 26 RA8 C11 H11 SING N N 27 RA8 N16 C18 SING N N 28 RA8 N16 C17 SING N N 29 RA8 C18 O24 DOUB N N 30 RA8 C18 C19 SING N N 31 RA8 C19 N25 SING N N 32 RA8 C19 C20 SING N N 33 RA8 C19 H19 SING N N 34 RA8 N25 S26 SING N N 35 RA8 N25 H25 SING N N 36 RA8 S26 O15 DOUB N N 37 RA8 S26 O29 DOUB N N 38 RA8 S26 C27 SING N N 39 RA8 C27 C30 SING N N 40 RA8 C27 H271 SING N N 41 RA8 C27 H272 SING N N 42 RA8 C20 C21 SING N N 43 RA8 C20 H201 SING N N 44 RA8 C20 H202 SING N N 45 RA8 C21 C23 SING N N 46 RA8 C21 C22 SING N N 47 RA8 C21 H21 SING N N 48 RA8 C23 H231 SING N N 49 RA8 C23 H232 SING N N 50 RA8 C23 H233 SING N N 51 RA8 C22 H221 SING N N 52 RA8 C22 H222 SING N N 53 RA8 C22 H223 SING N N 54 RA8 C17 C14 SING N N 55 RA8 C17 H171 SING N N 56 RA8 C17 H172 SING N N 57 RA8 C13 C14 SING N N 58 RA8 C13 H131 SING N N 59 RA8 C13 H132 SING N N 60 RA8 C14 H141 SING N N 61 RA8 C14 H142 SING N N 62 RA8 C30 C31 DOUB Y N 63 RA8 C30 C35 SING Y N 64 RA8 C31 C32 SING Y N 65 RA8 C31 H31 SING N N 66 RA8 C32 C33 DOUB Y N 67 RA8 C32 H32 SING N N 68 RA8 C33 C34 SING Y N 69 RA8 C33 H33 SING N N 70 RA8 C34 C35 DOUB Y N 71 RA8 C34 H34 SING N N 72 RA8 C35 H35 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RA8 SMILES ACDLabs 12.01 "O=C(NCCCCNC(=[N@H])N)C2N(C(=O)C(NS(=O)(=O)Cc1ccccc1)CC(C)C)CCC2" RA8 InChI InChI 1.03 "InChI=1S/C23H38N6O4S/c1-17(2)15-19(28-34(32,33)16-18-9-4-3-5-10-18)22(31)29-14-8-11-20(29)21(30)26-12-6-7-13-27-23(24)25/h3-5,9-10,17,19-20,28H,6-8,11-16H2,1-2H3,(H,26,30)(H4,24,25,27)/t19-,20-/m0/s1" RA8 InChIKey InChI 1.03 DSVCYWOHJLRGMK-PMACEKPBSA-N RA8 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](N[S](=O)(=O)Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCCCCNC(N)=N" RA8 SMILES CACTVS 3.385 "CC(C)C[CH](N[S](=O)(=O)Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCCCCNC(N)=N" RA8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "[H]/N=C(/N)\NCCCCNC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NS(=O)(=O)Cc2ccccc2" RA8 SMILES "OpenEye OEToolkits" 1.7.5 "CC(C)CC(C(=O)N1CCCC1C(=O)NCCCCNC(=N)N)NS(=O)(=O)Cc2ccccc2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RA8 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(benzylsulfonyl)-L-leucyl-N-(4-carbamimidamidobutyl)-L-prolinamide" RA8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-N-(4-carbamimidamidobutyl)-1-[(2S)-4-methyl-2-(phenylmethylsulfonylamino)pentanoyl]pyrrolidine-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RA8 "Create component" 2005-02-03 RCSB RA8 "Modify subcomponent list" 2011-02-24 RCSB RA8 "Modify descriptor" 2011-06-04 RCSB RA8 "Modify descriptor" 2012-01-05 RCSB RA8 "Modify subcomponent list" 2012-05-31 RCSB RA8 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RA8 _pdbx_chem_comp_synonyms.name "1-GUANIDINO-4-(N-PHENYLMETHANESULFONYL-L-LEUCYL-L-PROLYLAMINO)BUTANE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##