data_RAT # _chem_comp.id RAT _chem_comp.name "D-arabinaric acid" _chem_comp.type D-SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H8 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms D-arabinarate _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-05-26 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.113 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RAT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HK5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RAT O1A O1A O 0 1 N N N 19.470 -11.027 -79.144 -2.641 -1.490 -0.389 O1A RAT 1 RAT C1 C1 C 0 1 N N N 19.611 -10.879 -80.384 -2.476 -0.236 0.059 C1 RAT 2 RAT O1B O1B O 0 1 N N N 20.556 -10.284 -80.937 -3.309 0.262 0.779 O1B RAT 3 RAT C2 C2 C 0 1 N N S 18.535 -11.476 -81.289 -1.253 0.551 -0.336 C2 RAT 4 RAT O2 O2 O 0 1 N N N 18.634 -10.864 -82.585 -1.363 1.885 0.166 O2 RAT 5 RAT C3 C3 C 0 1 N N N 18.680 -13.014 -81.407 -0.007 -0.114 0.252 C3 RAT 6 RAT O3 O3 O 0 1 N N N 19.921 -13.333 -82.055 0.102 -1.447 -0.250 O3 RAT 7 RAT C4 C4 C 0 1 N N S 17.495 -13.694 -82.180 1.235 0.686 -0.149 C4 RAT 8 RAT O4 O4 O 0 1 N N N 17.351 -15.077 -81.805 1.276 0.819 -1.571 O4 RAT 9 RAT C5 C5 C 0 1 N N N 17.652 -13.634 -83.726 2.470 -0.035 0.325 C5 RAT 10 RAT O5A O5A O 0 1 N N N 17.971 -14.677 -84.337 3.257 -0.477 -0.479 O5A RAT 11 RAT O5B O5B O 0 1 N N N 17.427 -12.524 -84.272 2.697 -0.186 1.639 O5B RAT 12 RAT HO1A HO1A H 0 0 N N N 20.196 -10.615 -78.691 -3.441 -1.956 -0.109 HO1A RAT 13 RAT H2 H2 H 0 1 N N N 17.547 -11.276 -80.849 -1.173 0.577 -1.423 H2 RAT 14 RAT HO2 HO2 H 0 1 N N N 18.656 -9.919 -82.489 -1.438 1.938 1.128 HO2 RAT 15 RAT H3 H3 H 0 1 N N N 18.661 -13.413 -80.382 -0.087 -0.140 1.338 H3 RAT 16 RAT HO3 HO3 H 0 1 N N N 19.781 -13.403 -82.992 0.178 -1.501 -1.212 HO3 RAT 17 RAT H4 H4 H 0 1 N N N 16.603 -13.117 -81.895 1.193 1.674 0.307 H4 RAT 18 RAT HO4 HO4 H 0 1 N N N 17.319 -15.616 -82.587 1.315 -0.024 -2.044 HO4 RAT 19 RAT HO5B HO5B H 0 0 N N N 17.537 -12.605 -85.212 3.503 -0.655 1.895 HO5B RAT 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RAT C1 O1A SING N N 1 RAT O1A HO1A SING N N 2 RAT C2 C1 SING N N 3 RAT O1B C1 DOUB N N 4 RAT O2 C2 SING N N 5 RAT C3 C2 SING N N 6 RAT C2 H2 SING N N 7 RAT O2 HO2 SING N N 8 RAT C4 C3 SING N N 9 RAT O3 C3 SING N N 10 RAT C3 H3 SING N N 11 RAT O3 HO3 SING N N 12 RAT C5 C4 SING N N 13 RAT C4 O4 SING N N 14 RAT C4 H4 SING N N 15 RAT O4 HO4 SING N N 16 RAT O5A C5 DOUB N N 17 RAT O5B C5 SING N N 18 RAT O5B HO5B SING N N 19 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RAT SMILES ACDLabs 10.04 "O=C(O)C(O)C(O)C(O)C(=O)O" RAT SMILES_CANONICAL CACTVS 3.341 "O[C@@H]([C@H](O)C(O)=O)[C@H](O)C(O)=O" RAT SMILES CACTVS 3.341 "O[CH]([CH](O)C(O)=O)[CH](O)C(O)=O" RAT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H](C(=O)O)O)([C@@H](C(=O)O)O)O" RAT SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(=O)O)O)(C(C(=O)O)O)O" RAT InChI InChI 1.03 "InChI=1S/C5H8O7/c6-1(2(7)4(9)10)3(8)5(11)12/h1-3,6-8H,(H,9,10)(H,11,12)/t2-,3-/m0/s1" RAT InChIKey InChI 1.03 NPTTZSYLTYJCPR-HRFVKAFMSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RAT "SYSTEMATIC NAME" ACDLabs 10.04 "D-arabinaric acid" RAT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4S)-2,3,4-trihydroxypentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RAT "Create component" 2009-05-26 RCSB RAT "Modify descriptor" 2011-06-04 RCSB RAT "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RAT _pdbx_chem_comp_synonyms.name D-arabinarate _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##