data_RBH # _chem_comp.id RBH _chem_comp.name "~{N}-[(2~{S},3~{S},4~{S},5~{R})-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]-2-oxidanyl-ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H27 N4 O9" _chem_comp.mon_nstd_parent_comp_id GDA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-11-28 _chem_comp.pdbx_modified_date 2024-01-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.386 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RBH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BQA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RBH C3 C1 C 0 1 N N S N N N -2.480 1.400 32.429 -4.553 0.916 0.103 C14 RBH 1 RBH C2 C2 C 0 1 N N R N N N -2.042 1.485 30.967 -5.667 0.529 1.081 C13 RBH 2 RBH C6 C3 C 0 1 N N N N N N -4.914 -1.531 31.800 -3.570 -2.699 -0.780 C11 RBH 3 RBH C7 C4 C 0 1 N N N N N N -5.762 0.966 35.783 -0.424 1.015 -1.737 C7 RBH 4 RBH O2 O1 O 0 1 N N N N N N -0.823 2.201 30.814 -6.570 1.626 1.234 O8 RBH 5 RBH O8 O2 O 0 1 N N N N N N -4.790 0.286 36.538 0.668 1.668 -1.088 O2 RBH 6 RBH O4 O3 O 0 1 N N N N N N -6.095 1.733 33.569 -1.313 0.955 0.449 O4 RBH 7 RBH O6 O4 O 0 1 N N N N N N -4.708 -2.910 31.726 -4.321 -3.767 -1.360 O5 RBH 8 RBH O5 O5 O 0 1 N N N N N N -3.130 -0.603 30.514 -5.505 -1.760 0.322 O6 RBH 9 RBH C5 C5 C 0 1 N N S N N N -3.592 -0.787 31.877 -4.469 -1.472 -0.619 C10 RBH 10 RBH C4 C6 C 0 1 N N S N N N -3.765 0.586 32.543 -3.636 -0.292 -0.113 C9 RBH 11 RBH C8 C7 C 0 1 N N N N N N -5.378 1.072 34.330 -1.480 0.670 -0.718 C8 RBH 12 RBH C1 C8 C 0 1 N N R N N N -1.907 0.111 30.374 -6.422 -0.683 0.528 C12 RBH 13 RBH N4 N1 N 0 1 N N N N N N -4.265 0.457 33.913 -2.610 0.044 -1.103 N4 RBH 14 RBH O3 O6 O 0 1 N N N N N N -2.703 2.695 32.963 -3.797 2.000 0.645 O9 RBH 15 RBH H3 H1 H 0 1 N N N N N N -1.691 0.889 33.000 -4.990 1.216 -0.850 H26 RBH 16 RBH H2 H2 H 0 1 N N N N N N -2.834 2.012 30.415 -5.231 0.277 2.047 H24 RBH 17 RBH H62 H3 H 0 1 N N N N N N -5.461 -1.200 30.905 -3.196 -3.007 0.197 H20 RBH 18 RBH H61 H4 H 0 1 N N N N N N -5.508 -1.304 32.698 -2.729 -2.452 -1.428 H19 RBH 19 RBH H15 H5 H 0 1 N N N N N N -5.884 1.980 36.193 -0.849 1.679 -2.489 H15 RBH 20 RBH H14 H6 H 0 1 N N N N N N -6.715 0.422 35.859 -0.070 0.102 -2.216 H14 RBH 21 RBH HO2 H7 H 0 1 N Y N N N N -0.915 3.068 31.191 -7.302 1.450 1.841 H25 RBH 22 RBH HO6 H9 H 0 1 N N N N N N -5.547 -3.354 31.679 -3.813 -4.580 -1.491 H21 RBH 23 RBH H5 H10 H 0 1 N N N N N N -2.868 -1.382 32.452 -4.912 -1.218 -1.582 H18 RBH 24 RBH H4 H11 H 0 1 N N N N N N -4.531 1.122 31.963 -3.159 -0.560 0.830 H17 RBH 25 RBH H1 H12 H 0 1 N N N N N N -1.118 -0.420 30.927 -6.891 -0.419 -0.419 H2 RBH 26 RBH H8 H14 H 0 1 N N N N N N -3.757 -0.111 34.560 -2.743 -0.184 -2.036 H16 RBH 27 RBH HO3 H15 H 0 1 N Y N N N N -2.974 2.621 33.871 -4.316 2.800 0.807 H27 RBH 28 RBH O1 O7 O 0 1 N Y N N N N -1.591 0.158 29.048 -7.426 -1.085 1.462 O1 RBH 29 RBH HO1 H28 H 0 1 N Y N N N N -0.776 0.632 28.933 -7.944 -1.850 1.177 H3 RBH 30 RBH C9 C9 C 0 1 N N N N N N ? ? ? 1.730 2.040 -1.970 C1 RBH 31 RBH C10 C10 C 0 1 N N N N N N ? ? ? 2.839 2.727 -1.171 C2 RBH 32 RBH O9 O8 O 0 1 N N N N N N ? ? ? 3.417 1.793 -0.257 O3 RBH 33 RBH C11 C11 C 0 1 N N N N N N ? ? ? 4.469 2.337 0.542 C4 RBH 34 RBH C12 C12 C 0 1 N N N N N N ? ? ? 5.010 1.255 1.478 C5 RBH 35 RBH O7 O9 O 0 1 N N N N N N ? ? ? 5.619 0.218 0.706 O7 RBH 36 RBH C15 C15 C 0 1 N N N N N N ? ? ? 6.160 -0.849 1.489 C15 RBH 37 RBH C16 C16 C 0 1 N N N N N N ? ? ? 6.783 -1.896 0.563 C16 RBH 38 RBH N3 N3 N 0 1 N N N N N N ? ? ? 7.928 -1.309 -0.137 N3 RBH 39 RBH N2 N2 N 1 1 N N N N N N ? ? ? 8.952 -1.755 -0.011 N2 RBH 40 RBH N1 N4 N 0 1 N N N N N N ? ? ? 9.976 -2.201 0.114 N1 RBH 41 RBH H16 H29 H 0 1 N N N N N N ? ? ? 2.129 1.149 -2.454 H1 RBH 42 RBH H17 H16 H 0 1 N N N N N N ? ? ? 1.349 2.725 -2.727 H4 RBH 43 RBH H18 H17 H 0 1 N N N N N N ? ? ? 3.607 3.090 -1.854 H5 RBH 44 RBH H6 H18 H 0 1 N N N N N N ? ? ? 2.421 3.567 -0.616 H6 RBH 45 RBH H7 H19 H 0 1 N N N N N N ? ? ? 5.271 2.691 -0.105 H7 RBH 46 RBH H19 H8 H 0 1 N N N N N N ? ? ? 4.084 3.169 1.133 H8 RBH 47 RBH H9 H21 H 0 1 N N N N N N ? ? ? 5.751 1.691 2.149 H9 RBH 48 RBH H10 H22 H 0 1 N N N N N N ? ? ? 4.191 0.838 2.064 H10 RBH 49 RBH H11 H23 H 0 1 N N N N N N ? ? ? 6.924 -0.456 2.159 H11 RBH 50 RBH H12 H24 H 0 1 N N N N N N ? ? ? 5.364 -1.309 2.074 H12 RBH 51 RBH H13 H13 H 0 1 N N N N N N ? ? ? 7.115 -2.750 1.152 H13 RBH 52 RBH H22 H26 H 0 1 N N N N N N ? ? ? 6.041 -2.224 -0.166 H22 RBH 53 RBH H23 H27 H 0 1 N N N N N N ? ? ? 10.559 -1.887 0.824 H23 RBH 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RBH C1 O5 SING N N 1 RBH C1 C2 SING N N 2 RBH O5 C5 SING N N 3 RBH O2 C2 SING N N 4 RBH C2 C3 SING N N 5 RBH O6 C6 SING N N 6 RBH C6 C5 SING N N 7 RBH C5 C4 SING N N 8 RBH C3 C4 SING N N 9 RBH C3 O3 SING N N 10 RBH C4 N4 SING N N 11 RBH O4 C8 DOUB N N 12 RBH N4 C8 SING N N 13 RBH C8 C7 SING N N 14 RBH C7 O8 SING N N 15 RBH C3 H3 SING N N 16 RBH C2 H2 SING N N 17 RBH C6 H62 SING N N 18 RBH C6 H61 SING N N 19 RBH C7 H15 SING N N 20 RBH C7 H14 SING N N 21 RBH O2 HO2 SING N N 22 RBH O6 HO6 SING N N 23 RBH C5 H5 SING N N 24 RBH C4 H4 SING N N 25 RBH C1 H1 SING N N 26 RBH N4 H8 SING N N 27 RBH O3 HO3 SING N N 28 RBH C1 O1 SING N N 29 RBH O1 HO1 SING N N 30 RBH O8 C9 SING N N 31 RBH C9 C10 SING N N 32 RBH C10 O9 SING N N 33 RBH O9 C11 SING N N 34 RBH C11 C12 SING N N 35 RBH C12 O7 SING N N 36 RBH O7 C15 SING N N 37 RBH C15 C16 SING N N 38 RBH C16 N3 SING N N 39 RBH N3 N2 DOUB N N 40 RBH N2 N1 DOUB N N 41 RBH C9 H16 SING N N 42 RBH C9 H17 SING N N 43 RBH C10 H18 SING N N 44 RBH C10 H6 SING N N 45 RBH C11 H7 SING N N 46 RBH C11 H19 SING N N 47 RBH C12 H9 SING N N 48 RBH C12 H10 SING N N 49 RBH C15 H11 SING N N 50 RBH C15 H12 SING N N 51 RBH C16 H13 SING N N 52 RBH C16 H22 SING N N 53 RBH N1 H23 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RBH InChI InChI 1.06 "InChI=1S/C14H26N4O9/c15-18-16-1-2-24-3-4-25-5-6-26-8-10(20)17-11-9(7-19)27-14(23)13(22)12(11)21/h9,11-15,19,21-23H,1-8H2/p+1/t9-,11-,12+,13-,14-/m1/s1" RBH InChIKey InChI 1.06 RPRHCZBAXXPRCX-RGCYKPLRSA-O RBH SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1NC(=O)COCCOCCOCCN=[N+]=N" RBH SMILES CACTVS 3.385 "OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1NC(=O)COCCOCCOCCN=[N+]=N" RBH SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C(COCCOCCOCC(=O)N[C@@H]1[C@H](O[C@H]([C@@H]([C@H]1O)O)O)CO)N=[N+]=N" RBH SMILES "OpenEye OEToolkits" 3.1.0.0 "C(COCCOCCOCC(=O)NC1C(OC(C(C1O)O)O)CO)N=[N+]=N" # _pdbx_chem_comp_identifier.comp_id RBH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "azanylidene-[2-[2-[2-[2-[[(2~{S},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]amino]-2-oxidanylidene-ethoxy]ethoxy]ethoxy]ethylimino]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RBH "Create component" 2022-11-28 PDBE RBH "Initial release" 2023-11-29 RCSB RBH "Modify leaving atom flag" 2024-01-14 PDBE #