data_RD8 # _chem_comp.id RD8 _chem_comp.name Radezolid _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H23 F N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms RX-1741 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-29 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.455 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RD8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6WQQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RD8 C02 C1 C 0 1 Y N N 246.143 227.636 208.651 -0.384 0.118 1.003 C02 RD8 1 RD8 C03 C2 C 0 1 Y N N 246.247 226.721 209.690 0.157 1.047 0.113 C03 RD8 2 RD8 C04 C3 C 0 1 Y N N 246.141 227.184 211.151 1.628 1.207 0.010 C04 RD8 3 RD8 C05 C4 C 0 1 Y N N 247.151 226.877 212.049 2.396 1.375 1.161 C05 RD8 4 RD8 C06 C5 C 0 1 Y N N 247.057 227.293 213.369 3.764 1.523 1.059 C06 RD8 5 RD8 C07 C6 C 0 1 Y N N 245.035 227.903 211.577 2.249 1.183 -1.238 C07 RD8 6 RD8 C08 C7 C 0 1 Y N N 244.941 228.318 212.897 3.618 1.332 -1.328 C08 RD8 7 RD8 C09 C8 C 0 1 Y N N 245.953 228.012 213.792 4.374 1.505 -0.183 C09 RD8 8 RD8 C10 C9 C 0 1 N N N 245.847 228.473 215.250 5.869 1.667 -0.288 C10 RD8 9 RD8 C12 C10 C 0 1 N N N 244.367 228.682 217.102 7.971 0.467 -0.324 C12 RD8 10 RD8 C13 C11 C 0 1 Y N N 243.446 229.883 216.890 8.593 -0.904 -0.257 C13 RD8 11 RD8 C14 C12 C 0 1 Y N N 243.843 231.213 216.772 8.946 -1.686 -1.304 C14 RD8 12 RD8 C18 C13 C 0 1 Y N N 246.452 225.379 209.408 -0.687 1.823 -0.679 C18 RD8 13 RD8 C19 C14 C 0 1 Y N N 246.549 224.949 208.091 -2.053 1.673 -0.582 C19 RD8 14 RD8 C20 C15 C 0 1 Y N N 246.442 225.863 207.054 -2.592 0.748 0.305 C20 RD8 15 RD8 C22 C16 C 0 1 N N N 245.640 225.718 204.626 -4.676 -0.429 1.191 C22 RD8 16 RD8 C23 C17 C 0 1 N N S 246.058 224.932 203.436 -6.167 -0.141 0.934 C23 RD8 17 RD8 C24 C18 C 0 1 N N N 245.146 223.724 203.260 -6.838 -1.343 0.267 C24 RD8 18 RD8 C26 C19 C 0 1 N N N 243.324 222.510 204.492 -9.020 -1.924 -0.650 C26 RD8 19 RD8 C27 C20 C 0 1 N N N 242.235 222.486 205.565 -10.450 -1.583 -0.979 C27 RD8 20 RD8 C30 C21 C 0 1 N N N 247.607 224.580 205.108 -4.890 1.357 -0.223 C30 RD8 21 RD8 C32 C22 C 0 1 Y N N 246.240 227.207 207.335 -1.755 -0.032 1.093 C32 RD8 22 RD8 F01 F1 F 0 1 N N N 245.945 228.960 208.916 0.430 -0.637 1.773 F01 RD8 23 RD8 N11 N1 N 0 1 N N N 244.603 228.000 215.836 6.510 0.347 -0.225 N11 RD8 24 RD8 N15 N2 N 0 1 Y N N 242.765 231.937 216.600 9.461 -2.819 -0.771 N15 RD8 25 RD8 N16 N3 N 0 1 Y N N 241.680 231.130 216.600 9.416 -2.718 0.511 N16 RD8 26 RD8 N17 N4 N 0 1 Y N N 242.117 229.847 216.782 8.909 -1.586 0.850 N17 RD8 27 RD8 N21 N5 N 0 1 N N N 246.544 225.417 205.671 -3.979 0.595 0.398 N21 RD8 28 RD8 N25 N6 N 0 1 N N N 244.114 223.710 204.282 -8.229 -1.011 -0.053 N25 RD8 29 RD8 O28 O1 O 0 1 N N N 243.530 221.548 203.835 -8.580 -3.022 -0.922 O28 RD8 30 RD8 O29 O2 O 0 1 N N N 247.381 224.481 203.683 -6.155 1.003 0.031 O29 RD8 31 RD8 O31 O3 O 0 1 N N N 248.494 224.077 205.709 -4.594 2.285 -0.949 O31 RD8 32 RD8 H1 H1 H 0 1 N N N 248.012 226.313 211.721 1.921 1.390 2.131 H1 RD8 33 RD8 H2 H2 H 0 1 N N N 247.846 227.056 214.067 4.360 1.654 1.950 H2 RD8 34 RD8 H3 H3 H 0 1 N N N 244.245 228.140 210.880 1.659 1.048 -2.133 H3 RD8 35 RD8 H4 H4 H 0 1 N N N 244.079 228.879 213.227 4.099 1.314 -2.295 H4 RD8 36 RD8 H5 H5 H 0 1 N N N 246.695 228.068 215.822 6.116 2.147 -1.234 H5 RD8 37 RD8 H6 H6 H 0 1 N N N 245.871 229.572 215.286 6.226 2.284 0.537 H6 RD8 38 RD8 H7 H7 H 0 1 N N N 243.896 227.983 217.809 8.343 1.076 0.500 H7 RD8 39 RD8 H8 H8 H 0 1 N N N 245.327 229.028 217.513 8.233 0.938 -1.271 H8 RD8 40 RD8 H9 H9 H 0 1 N N N 244.857 231.581 216.815 8.839 -1.452 -2.352 H9 RD8 41 RD8 H10 H10 H 0 1 N N N 246.536 224.666 210.215 -0.270 2.543 -1.368 H10 RD8 42 RD8 H11 H11 H 0 1 N N N 246.708 223.903 207.875 -2.707 2.275 -1.196 H11 RD8 43 RD8 H12 H12 H 0 1 N N N 245.674 226.793 204.397 -4.441 -0.317 2.250 H12 RD8 44 RD8 H13 H13 H 0 1 N N N 244.618 225.438 204.921 -4.411 -1.428 0.845 H13 RD8 45 RD8 H14 H14 H 0 1 N N N 246.016 225.560 202.534 -6.674 0.113 1.865 H14 RD8 46 RD8 H15 H15 H 0 1 N N N 244.672 223.770 202.268 -6.305 -1.594 -0.650 H15 RD8 47 RD8 H16 H16 H 0 1 N N N 245.745 222.805 203.338 -6.815 -2.195 0.946 H16 RD8 48 RD8 H17 H17 H 0 1 N N N 241.755 221.497 205.579 -10.662 -0.562 -0.662 H17 RD8 49 RD8 H18 H18 H 0 1 N N N 242.685 222.689 206.548 -10.606 -1.670 -2.054 H18 RD8 50 RD8 H19 H19 H 0 1 N N N 241.482 223.256 205.340 -11.117 -2.270 -0.458 H19 RD8 51 RD8 H20 H20 H 0 1 N N N 246.158 227.920 206.528 -2.175 -0.750 1.781 H20 RD8 52 RD8 H21 H21 H 0 1 N N N 243.847 228.190 215.210 6.244 -0.145 0.615 H21 RD8 53 RD8 H23 H23 H 0 1 N N N 242.747 232.930 216.487 9.800 -3.578 -1.271 H23 RD8 54 RD8 H24 H24 H 0 1 N N N 243.948 224.524 204.839 -8.580 -0.133 0.165 H24 RD8 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RD8 C24 C23 SING N N 1 RD8 C24 N25 SING N N 2 RD8 C23 O29 SING N N 3 RD8 C23 C22 SING N N 4 RD8 O29 C30 SING N N 5 RD8 O28 C26 DOUB N N 6 RD8 N25 C26 SING N N 7 RD8 C26 C27 SING N N 8 RD8 C22 N21 SING N N 9 RD8 C30 N21 SING N N 10 RD8 C30 O31 DOUB N N 11 RD8 N21 C20 SING N N 12 RD8 C20 C32 DOUB Y N 13 RD8 C20 C19 SING Y N 14 RD8 C32 C02 SING Y N 15 RD8 C19 C18 DOUB Y N 16 RD8 C02 F01 SING N N 17 RD8 C02 C03 DOUB Y N 18 RD8 C18 C03 SING Y N 19 RD8 C03 C04 SING N N 20 RD8 C04 C07 DOUB Y N 21 RD8 C04 C05 SING Y N 22 RD8 C07 C08 SING Y N 23 RD8 C05 C06 DOUB Y N 24 RD8 C08 C09 DOUB Y N 25 RD8 C06 C09 SING Y N 26 RD8 C09 C10 SING N N 27 RD8 C10 N11 SING N N 28 RD8 N11 C12 SING N N 29 RD8 N15 N16 SING Y N 30 RD8 N15 C14 SING Y N 31 RD8 N16 N17 DOUB Y N 32 RD8 C14 C13 DOUB Y N 33 RD8 N17 C13 SING Y N 34 RD8 C13 C12 SING N N 35 RD8 C05 H1 SING N N 36 RD8 C06 H2 SING N N 37 RD8 C07 H3 SING N N 38 RD8 C08 H4 SING N N 39 RD8 C10 H5 SING N N 40 RD8 C10 H6 SING N N 41 RD8 C12 H7 SING N N 42 RD8 C12 H8 SING N N 43 RD8 C14 H9 SING N N 44 RD8 C18 H10 SING N N 45 RD8 C19 H11 SING N N 46 RD8 C22 H12 SING N N 47 RD8 C22 H13 SING N N 48 RD8 C23 H14 SING N N 49 RD8 C24 H15 SING N N 50 RD8 C24 H16 SING N N 51 RD8 C27 H17 SING N N 52 RD8 C27 H18 SING N N 53 RD8 C27 H19 SING N N 54 RD8 C32 H20 SING N N 55 RD8 N11 H21 SING N N 56 RD8 N15 H23 SING N N 57 RD8 N25 H24 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RD8 SMILES ACDLabs 12.01 "c3(F)c(c1ccc(cc1)CNCc2cnnn2)ccc(c3)N4CC(OC4=O)CNC(C)=O" RD8 InChI InChI 1.03 "InChI=1S/C22H23FN6O3/c1-14(30)25-12-19-13-29(22(31)32-19)18-6-7-20(21(23)8-18)16-4-2-15(3-5-16)9-24-10-17-11-26-28-27-17/h2-8,11,19,24H,9-10,12-13H2,1H3,(H,25,30)(H,26,27,28)/t19-/m0/s1" RD8 InChIKey InChI 1.03 BTTNOGHPGJANSW-IBGZPJMESA-N RD8 SMILES_CANONICAL CACTVS 3.385 "CC(=O)NC[C@H]1CN(C(=O)O1)c2ccc(c(F)c2)c3ccc(CNCc4c[nH]nn4)cc3" RD8 SMILES CACTVS 3.385 "CC(=O)NC[CH]1CN(C(=O)O1)c2ccc(c(F)c2)c3ccc(CNCc4c[nH]nn4)cc3" RD8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NC[C@H]1CN(C(=O)O1)c2ccc(c(c2)F)c3ccc(cc3)CNCc4c[nH]nn4" RD8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NCC1CN(C(=O)O1)c2ccc(c(c2)F)c3ccc(cc3)CNCc4c[nH]nn4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RD8 "SYSTEMATIC NAME" ACDLabs 12.01 "N-({(5S)-3-[2-fluoro-4'-({[(1H-1,2,3-triazol-4-yl)methyl]amino}methyl)[1,1'-biphenyl]-4-yl]-2-oxo-1,3-oxazolidin-5-yl}methyl)acetamide" RD8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[[(5~{S})-3-[3-fluoranyl-4-[4-[(1~{H}-1,2,3-triazol-4-ylmethylamino)methyl]phenyl]phenyl]-2-oxidanylidene-1,3-oxazolidin-5-yl]methyl]ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RD8 "Create component" 2020-04-29 RCSB RD8 "Initial release" 2020-06-03 RCSB RD8 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RD8 _pdbx_chem_comp_synonyms.name RX-1741 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##