data_RDN # _chem_comp.id RDN _chem_comp.name "(8R)-6-(9H-pyrimido[4,5-b]indol-4-yl)-6-azaspiro[3.4]octane-8-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-22 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 322.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RDN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SRP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RDN C18 C1 C 0 1 N N N -43.699 -28.983 4.421 -3.869 0.281 -1.496 C18 RDN 1 RDN N1 N1 N 0 1 N N N -46.508 -29.422 2.284 -0.424 -0.009 -0.036 N1 RDN 2 RDN C16 C2 C 0 1 N N N -42.794 -28.440 2.617 -2.823 2.111 -1.228 C16 RDN 3 RDN C17 C3 C 0 1 N N N -42.269 -28.882 3.965 -4.314 1.747 -1.342 C17 RDN 4 RDN C15 C4 C 0 1 N N N -44.128 -29.162 2.933 -2.597 0.677 -0.747 C15 RDN 5 RDN C14 C5 C 0 1 N N N -45.443 -28.460 2.549 -1.303 0.011 -1.235 C14 RDN 6 RDN C13 C6 C 0 1 Y N N -49.814 -28.902 1.167 1.167 -3.179 -0.464 C13 RDN 7 RDN O2 O1 O 0 1 N N N -43.641 -32.782 2.096 -3.840 -1.528 1.069 O2 RDN 8 RDN C12 C7 C 0 1 Y N N -50.111 -28.847 3.380 2.873 -1.653 -0.202 C12 RDN 9 RDN C11 C8 C 0 1 Y N N -47.551 -29.214 6.026 2.268 1.944 0.312 C11 RDN 10 RDN C10 C9 C 0 1 Y N N -47.841 -29.170 7.408 3.227 2.919 0.477 C10 RDN 11 RDN C9 C10 C 0 1 Y N N -49.153 -28.972 7.851 4.573 2.585 0.459 C9 RDN 12 RDN C8 C11 C 0 1 Y N N -50.176 -28.826 6.919 4.968 1.277 0.276 C8 RDN 13 RDN C7 C12 C 0 1 Y N N -49.924 -28.869 5.548 4.015 0.278 0.108 C7 RDN 14 RDN C6 C13 C 0 1 Y N N -48.594 -29.063 5.063 2.653 0.618 0.126 C6 RDN 15 RDN C5 C14 C 0 1 Y N N -48.718 -29.055 3.599 1.913 -0.637 -0.075 C5 RDN 16 RDN C4 C15 C 0 1 Y N N -47.951 -29.169 2.408 0.557 -0.977 -0.155 C4 RDN 17 RDN C3 C16 C 0 1 N N N -45.864 -30.665 2.665 -1.342 -0.318 1.091 C3 RDN 18 RDN C2 C17 C 0 1 N N R -44.413 -30.501 2.267 -2.632 0.473 0.772 C2 RDN 19 RDN C1 C18 C 0 1 N N N -43.565 -31.691 2.726 -3.848 -0.324 1.168 C1 RDN 20 RDN O1 O2 O 0 1 N N N -42.804 -31.602 3.715 -4.941 0.304 1.629 O1 RDN 21 RDN N2 N2 N 0 1 Y N N -50.722 -28.752 4.516 4.120 -1.089 -0.090 N2 RDN 22 RDN N3 N3 N 0 1 Y N N -50.686 -28.765 2.162 2.452 -2.903 -0.394 N3 RDN 23 RDN N4 N4 N 0 1 Y N N -48.531 -29.087 1.247 0.234 -2.253 -0.350 N4 RDN 24 RDN H16 H1 H 0 1 N N N -44.088 -28.072 4.899 -4.495 -0.426 -0.952 H16 RDN 25 RDN H17 H2 H 0 1 N N N -43.910 -29.852 5.062 -3.693 -0.017 -2.530 H17 RDN 26 RDN H12 H3 H 0 1 N N N -42.246 -28.856 1.759 -2.353 2.330 -2.187 H12 RDN 27 RDN H13 H4 H 0 1 N N N -42.885 -27.350 2.501 -2.613 2.865 -0.470 H13 RDN 28 RDN H14 H5 H 0 1 N N N -41.723 -29.837 3.953 -4.796 2.153 -2.232 H14 RDN 29 RDN H15 H6 H 0 1 N N N -41.672 -28.125 4.495 -4.881 1.936 -0.431 H15 RDN 30 RDN H11 H7 H 0 1 N N N -45.275 -27.856 1.645 -0.849 0.600 -2.032 H11 RDN 31 RDN H10 H8 H 0 1 N N N -45.752 -27.804 3.376 -1.503 -1.005 -1.577 H10 RDN 32 RDN H9 H9 H 0 1 N N N -50.224 -28.853 0.169 0.864 -4.203 -0.626 H9 RDN 33 RDN H7 H10 H 0 1 N N N -46.534 -29.363 5.696 1.220 2.206 0.327 H7 RDN 34 RDN H6 H11 H 0 1 N N N -47.044 -29.290 8.127 2.930 3.947 0.621 H6 RDN 35 RDN H5 H12 H 0 1 N N N -49.370 -28.933 8.908 5.318 3.356 0.588 H5 RDN 36 RDN H4 H13 H 0 1 N N N -51.188 -28.676 7.265 6.019 1.028 0.263 H4 RDN 37 RDN H2 H14 H 0 1 N N N -46.317 -31.513 2.131 -1.552 -1.387 1.129 H2 RDN 38 RDN H3 H15 H 0 1 N N N -45.950 -30.827 3.750 -0.912 0.018 2.035 H3 RDN 39 RDN H1 H16 H 0 1 N N N -44.337 -30.395 1.175 -2.625 1.435 1.286 H1 RDN 40 RDN H18 H17 H 0 1 N N N -42.365 -32.433 3.853 -5.697 -0.250 1.870 H18 RDN 41 RDN H8 H18 H 0 1 N N N -51.708 -28.604 4.598 4.956 -1.578 -0.142 H8 RDN 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RDN C13 N4 DOUB Y N 1 RDN C13 N3 SING Y N 2 RDN N4 C4 SING Y N 3 RDN O2 C1 DOUB N N 4 RDN N3 C12 DOUB Y N 5 RDN C2 C3 SING N N 6 RDN C2 C1 SING N N 7 RDN C2 C15 SING N N 8 RDN N1 C4 SING N N 9 RDN N1 C14 SING N N 10 RDN N1 C3 SING N N 11 RDN C4 C5 DOUB Y N 12 RDN C14 C15 SING N N 13 RDN C16 C15 SING N N 14 RDN C16 C17 SING N N 15 RDN C1 O1 SING N N 16 RDN C15 C18 SING N N 17 RDN C12 C5 SING Y N 18 RDN C12 N2 SING Y N 19 RDN C5 C6 SING Y N 20 RDN C17 C18 SING N N 21 RDN N2 C7 SING Y N 22 RDN C6 C7 DOUB Y N 23 RDN C6 C11 SING Y N 24 RDN C7 C8 SING Y N 25 RDN C11 C10 DOUB Y N 26 RDN C8 C9 DOUB Y N 27 RDN C10 C9 SING Y N 28 RDN C18 H16 SING N N 29 RDN C18 H17 SING N N 30 RDN C16 H12 SING N N 31 RDN C16 H13 SING N N 32 RDN C17 H14 SING N N 33 RDN C17 H15 SING N N 34 RDN C14 H11 SING N N 35 RDN C14 H10 SING N N 36 RDN C13 H9 SING N N 37 RDN C11 H7 SING N N 38 RDN C10 H6 SING N N 39 RDN C9 H5 SING N N 40 RDN C8 H4 SING N N 41 RDN C3 H2 SING N N 42 RDN C3 H3 SING N N 43 RDN C2 H1 SING N N 44 RDN O1 H18 SING N N 45 RDN N2 H8 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RDN SMILES ACDLabs 12.01 "O=C(O)C1CN(CC21CCC2)c1ncnc2[NH]c3ccccc3c12" RDN InChI InChI 1.06 "InChI=1S/C18H18N4O2/c23-17(24)12-8-22(9-18(12)6-3-7-18)16-14-11-4-1-2-5-13(11)21-15(14)19-10-20-16/h1-2,4-5,10,12H,3,6-9H2,(H,23,24)(H,19,20,21)/t12-/m1/s1" RDN InChIKey InChI 1.06 GCIZFGPLNCVZMB-GFCCVEGCSA-N RDN SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H]1CN(CC12CCC2)c3ncnc4[nH]c5ccccc5c34" RDN SMILES CACTVS 3.385 "OC(=O)[CH]1CN(CC12CCC2)c3ncnc4[nH]c5ccccc5c34" RDN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3c([nH]2)ncnc3N4C[C@@H](C5(C4)CCC5)C(=O)O" RDN SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3c([nH]2)ncnc3N4CC(C5(C4)CCC5)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RDN "SYSTEMATIC NAME" ACDLabs 12.01 "(8R)-6-(9H-pyrimido[4,5-b]indol-4-yl)-6-azaspiro[3.4]octane-8-carboxylic acid" RDN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(8~{R})-6-(9~{H}-pyrimido[4,5-b]indol-4-yl)-6-azaspiro[3.4]octane-8-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RDN "Create component" 2022-06-22 RCSB RDN "Initial release" 2022-07-06 RCSB #