data_RDU # _chem_comp.id RDU _chem_comp.name "[(6R)-8-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-5-oxa-8-azaspiro[3.5]nonan-6-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H19 F N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-22 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.367 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RDU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SRQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RDU C18 C1 C 0 1 Y N N -44.071 -29.409 6.231 -0.679 -3.732 0.106 C18 RDU 1 RDU C16 C2 C 0 1 Y N N -46.320 -29.248 6.298 -2.350 -2.150 0.014 C16 RDU 2 RDU C13 C3 C 0 1 Y N N -48.848 -29.083 3.549 -1.667 1.467 -0.116 C13 RDU 3 RDU C12 C4 C 0 1 Y N N -50.225 -28.983 3.689 -2.604 2.476 -0.176 C12 RDU 4 RDU C11 C5 C 0 1 Y N N -50.753 -28.944 4.973 -3.959 2.171 -0.196 C11 RDU 5 RDU C10 C6 C 0 1 Y N N -49.968 -28.992 6.111 -4.382 0.858 -0.158 C10 RDU 6 RDU C20 C7 C 0 1 N N N -43.960 -30.263 2.120 1.827 -0.660 1.207 C20 RDU 7 RDU C02 C8 C 0 1 N N N -47.286 -30.313 -0.335 3.697 0.287 -2.505 C02 RDU 8 RDU C03 C9 C 0 1 N N R -46.009 -29.621 0.240 2.827 0.436 -1.255 C03 RDU 9 RDU C04 C10 C 0 1 N N N -46.225 -29.307 1.792 1.795 -0.693 -1.212 C04 RDU 10 RDU C06 C11 C 0 1 Y N N -45.171 -29.338 4.151 -0.021 -1.524 0.032 C06 RDU 11 RDU C07 C12 C 0 1 Y N N -46.457 -29.248 4.868 -1.368 -1.148 -0.014 C07 RDU 12 RDU C08 C13 C 0 1 Y N N -47.943 -29.142 4.636 -2.081 0.138 -0.078 C08 RDU 13 RDU C09 C14 C 0 1 Y N N -48.578 -29.086 5.930 -3.450 -0.173 -0.099 C09 RDU 14 RDU C21 C15 C 0 1 N N N -44.426 -31.207 0.984 2.913 0.412 1.133 C21 RDU 15 RDU C23 C16 C 0 1 N N N -45.461 -32.288 1.482 3.797 0.476 2.385 C23 RDU 16 RDU C24 C17 C 0 1 N N N -44.534 -33.428 1.132 2.778 1.480 2.952 C24 RDU 17 RDU C25 C18 C 0 1 N N N -43.564 -32.422 0.483 2.413 1.816 1.495 C25 RDU 18 RDU F14 F1 F 0 1 N N N -52.089 -28.852 5.099 -4.869 3.167 -0.254 F14 RDU 19 RDU N05 N1 N 0 1 N N N -45.027 -29.364 2.675 0.982 -0.570 0.006 N05 RDU 20 RDU N15 N2 N 0 1 Y N N -47.572 -29.155 6.906 -3.585 -1.549 -0.028 N15 RDU 21 RDU N17 N3 N 0 1 Y N N -45.157 -29.328 6.992 -1.957 -3.422 0.074 N17 RDU 22 RDU N19 N4 N 0 1 Y N N -44.020 -29.418 4.875 0.275 -2.820 0.086 N19 RDU 23 RDU O01 O1 O 0 1 N N N -48.267 -29.377 -0.544 4.581 1.404 -2.606 O01 RDU 24 RDU O22 O2 O 0 1 N N N -45.018 -30.521 -0.026 3.652 0.367 -0.087 O22 RDU 25 RDU H181 H1 H 0 0 N N N -43.125 -29.475 6.748 -0.399 -4.774 0.154 H181 RDU 26 RDU H131 H2 H 0 0 N N N -48.442 -29.118 2.549 -0.614 1.707 -0.100 H131 RDU 27 RDU H121 H3 H 0 0 N N N -50.869 -28.937 2.823 -2.284 3.507 -0.206 H121 RDU 28 RDU H101 H4 H 0 0 N N N -50.406 -28.959 7.098 -5.438 0.630 -0.175 H101 RDU 29 RDU H201 H5 H 0 0 N N N -43.574 -30.883 2.943 2.289 -1.646 1.254 H201 RDU 30 RDU H202 H6 H 0 0 N N N -43.151 -29.630 1.727 1.216 -0.501 2.096 H202 RDU 31 RDU H022 H7 H 0 0 N N N -47.647 -31.067 0.381 4.279 -0.632 -2.434 H022 RDU 32 RDU H021 H8 H 0 0 N N N -47.038 -30.802 -1.289 3.060 0.247 -3.388 H021 RDU 33 RDU H031 H9 H 0 0 N N N -45.850 -28.670 -0.289 2.313 1.398 -1.282 H031 RDU 34 RDU H042 H10 H 0 0 N N N -46.644 -28.293 1.868 1.150 -0.629 -2.088 H042 RDU 35 RDU H041 H11 H 0 0 N N N -46.954 -30.035 2.178 2.309 -1.655 -1.210 H041 RDU 36 RDU H231 H12 H 0 0 N N N -45.686 -32.219 2.556 3.840 -0.462 2.938 H231 RDU 37 RDU H232 H13 H 0 0 N N N -46.400 -32.294 0.910 4.781 0.907 2.202 H232 RDU 38 RDU H241 H14 H 0 0 N N N -44.962 -34.159 0.430 1.967 1.011 3.508 H241 RDU 39 RDU H242 H15 H 0 0 N N N -44.120 -33.956 2.003 3.237 2.310 3.490 H242 RDU 40 RDU H251 H16 H 0 0 N N N -43.508 -32.504 -0.613 3.015 2.618 1.068 H251 RDU 41 RDU H252 H17 H 0 0 N N N -42.549 -32.449 0.905 1.344 1.954 1.334 H252 RDU 42 RDU H151 H18 H 0 0 N N N -47.730 -29.140 7.893 -4.431 -2.023 -0.020 H151 RDU 43 RDU H011 H19 H 0 0 N N N -49.041 -29.802 -0.894 5.164 1.376 -3.377 H011 RDU 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RDU O01 C02 SING N N 1 RDU C02 C03 SING N N 2 RDU O22 C03 SING N N 3 RDU O22 C21 SING N N 4 RDU C03 C04 SING N N 5 RDU C25 C21 SING N N 6 RDU C25 C24 SING N N 7 RDU C21 C23 SING N N 8 RDU C21 C20 SING N N 9 RDU C24 C23 SING N N 10 RDU C04 N05 SING N N 11 RDU C20 N05 SING N N 12 RDU N05 C06 SING N N 13 RDU C13 C12 DOUB Y N 14 RDU C13 C08 SING Y N 15 RDU C12 C11 SING Y N 16 RDU C06 C07 DOUB Y N 17 RDU C06 N19 SING Y N 18 RDU C08 C07 SING Y N 19 RDU C08 C09 DOUB Y N 20 RDU C07 C16 SING Y N 21 RDU N19 C18 DOUB Y N 22 RDU C11 F14 SING N N 23 RDU C11 C10 DOUB Y N 24 RDU C09 C10 SING Y N 25 RDU C09 N15 SING Y N 26 RDU C18 N17 SING Y N 27 RDU C16 N15 SING Y N 28 RDU C16 N17 DOUB Y N 29 RDU C18 H181 SING N N 30 RDU C13 H131 SING N N 31 RDU C12 H121 SING N N 32 RDU C10 H101 SING N N 33 RDU C20 H201 SING N N 34 RDU C20 H202 SING N N 35 RDU C02 H022 SING N N 36 RDU C02 H021 SING N N 37 RDU C03 H031 SING N N 38 RDU C04 H042 SING N N 39 RDU C04 H041 SING N N 40 RDU C23 H231 SING N N 41 RDU C23 H232 SING N N 42 RDU C24 H241 SING N N 43 RDU C24 H242 SING N N 44 RDU C25 H251 SING N N 45 RDU C25 H252 SING N N 46 RDU N15 H151 SING N N 47 RDU O01 H011 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RDU SMILES ACDLabs 12.01 "Fc1ccc2c3c([NH]c2c1)ncnc3N1CC2(CCC2)OC(C1)CO" RDU InChI InChI 1.06 "InChI=1S/C18H19FN4O2/c19-11-2-3-13-14(6-11)22-16-15(13)17(21-10-20-16)23-7-12(8-24)25-18(9-23)4-1-5-18/h2-3,6,10,12,24H,1,4-5,7-9H2,(H,20,21,22)/t12-/m1/s1" RDU InChIKey InChI 1.06 LYLUBGOVYDDPIC-GFCCVEGCSA-N RDU SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1CN(CC2(CCC2)O1)c3ncnc4[nH]c5cc(F)ccc5c34" RDU SMILES CACTVS 3.385 "OC[CH]1CN(CC2(CCC2)O1)c3ncnc4[nH]c5cc(F)ccc5c34" RDU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4C[C@@H](OC5(C4)CCC5)CO" RDU SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CC(OC5(C4)CCC5)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RDU "SYSTEMATIC NAME" ACDLabs 12.01 "[(6R)-8-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-5-oxa-8-azaspiro[3.5]nonan-6-yl]methanol" RDU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(6~{R})-8-(7-fluoranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-5-oxa-8-azaspiro[3.5]nonan-6-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RDU "Create component" 2022-06-22 RCSB RDU "Initial release" 2022-07-06 RCSB #