data_RKY # _chem_comp.id RKY _chem_comp.name "4-(3,4-dihydro-2H-1,5-benzodioxepin-7-yl)-4-oxobutanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-13 _chem_comp.pdbx_modified_date 2020-07-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 250.247 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RKY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VSF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RKY C10 C1 C 0 1 Y N N 10.701 6.555 28.661 1.312 1.727 -0.260 C10 RKY 1 RKY C13 C2 C 0 1 N N N 7.581 5.881 27.064 4.509 1.153 0.687 C13 RKY 2 RKY C15 C3 C 0 1 N N N 8.057 7.893 25.717 4.179 -1.351 0.649 C15 RKY 3 RKY C17 C4 C 0 1 Y N N 9.311 8.253 27.695 2.222 -0.503 -0.382 C17 RKY 4 RKY O01 O1 O 0 1 N N N 14.824 12.671 29.517 -6.407 -0.232 0.250 O01 RKY 5 RKY C02 C5 C 0 1 N N N 14.453 11.464 29.587 -5.168 0.277 0.172 C02 RKY 6 RKY O03 O2 O 0 1 N N N 14.403 10.773 28.562 -5.004 1.474 0.185 O03 RKY 7 RKY C04 C6 C 0 1 N N N 14.069 10.826 30.937 -3.980 -0.645 0.069 C04 RKY 8 RKY C05 C7 C 0 1 N N N 13.143 9.569 30.794 -2.696 0.184 -0.006 C05 RKY 9 RKY C06 C8 C 0 1 N N N 11.829 9.946 29.991 -1.508 -0.738 -0.109 C06 RKY 10 RKY O07 O3 O 0 1 N N N 11.484 11.066 29.952 -1.672 -1.940 -0.122 O07 RKY 11 RKY C08 C9 C 0 1 Y N N 11.043 8.849 29.228 -0.152 -0.181 -0.195 C08 RKY 12 RKY C09 C10 C 0 1 Y N N 11.397 7.505 29.350 0.040 1.206 -0.180 C09 RKY 13 RKY C11 C11 C 0 1 Y N N 9.648 6.920 27.833 2.405 0.876 -0.361 C11 RKY 14 RKY O12 O4 O 0 1 N N N 8.986 5.875 27.114 3.665 1.388 -0.442 O12 RKY 15 RKY C14 C12 C 0 1 N N N 7.068 6.833 25.954 5.179 -0.208 0.586 C14 RKY 16 RKY O16 O5 O 0 1 N N N 8.209 8.693 26.840 3.307 -1.325 -0.483 O16 RKY 17 RKY C18 C13 C 0 1 Y N N 10.012 9.222 28.406 0.953 -1.037 -0.301 C18 RKY 18 RKY H1 H1 H 0 1 N N N 10.971 5.514 28.760 1.459 2.797 -0.249 H1 RKY 19 RKY H2 H2 H 0 1 N N N 7.188 6.216 28.035 5.275 1.928 0.729 H2 RKY 20 RKY H3 H3 H 0 1 N N N 7.224 4.861 26.856 3.910 1.191 1.596 H3 RKY 21 RKY H4 H4 H 0 1 N N N 9.025 7.433 25.470 4.718 -2.299 0.664 H4 RKY 22 RKY H5 H5 H 0 1 N N N 7.721 8.516 24.875 3.587 -1.261 1.559 H5 RKY 23 RKY H6 H6 H 0 1 N N N 15.027 12.889 28.615 -7.137 0.398 0.315 H6 RKY 24 RKY H7 H7 H 0 1 N N N 14.991 10.522 31.453 -3.944 -1.292 0.945 H7 RKY 25 RKY H8 H8 H 0 1 N N N 13.542 11.580 31.541 -4.071 -1.256 -0.830 H8 RKY 26 RKY H9 H9 H 0 1 N N N 12.866 9.206 31.795 -2.731 0.830 -0.883 H9 RKY 27 RKY H10 H10 H 0 1 N N N 13.685 8.778 30.254 -2.605 0.794 0.892 H10 RKY 28 RKY H11 H11 H 0 1 N N N 12.220 7.217 29.988 -0.811 1.867 -0.105 H11 RKY 29 RKY H12 H12 H 0 1 N N N 6.116 7.285 26.270 5.722 -0.265 -0.358 H12 RKY 30 RKY H13 H13 H 0 1 N N N 6.913 6.263 25.026 5.889 -0.314 1.406 H13 RKY 31 RKY H14 H14 H 0 1 N N N 9.745 10.264 28.310 0.812 -2.107 -0.317 H14 RKY 32 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RKY C15 C14 SING N N 1 RKY C15 O16 SING N N 2 RKY C14 C13 SING N N 3 RKY O16 C17 SING N N 4 RKY C13 O12 SING N N 5 RKY O12 C11 SING N N 6 RKY C17 C11 DOUB Y N 7 RKY C17 C18 SING Y N 8 RKY C11 C10 SING Y N 9 RKY C18 C08 DOUB Y N 10 RKY O03 C02 DOUB N N 11 RKY C10 C09 DOUB Y N 12 RKY C08 C09 SING Y N 13 RKY C08 C06 SING N N 14 RKY O01 C02 SING N N 15 RKY C02 C04 SING N N 16 RKY O07 C06 DOUB N N 17 RKY C06 C05 SING N N 18 RKY C05 C04 SING N N 19 RKY C10 H1 SING N N 20 RKY C13 H2 SING N N 21 RKY C13 H3 SING N N 22 RKY C15 H4 SING N N 23 RKY C15 H5 SING N N 24 RKY O01 H6 SING N N 25 RKY C04 H7 SING N N 26 RKY C04 H8 SING N N 27 RKY C05 H9 SING N N 28 RKY C05 H10 SING N N 29 RKY C09 H11 SING N N 30 RKY C14 H12 SING N N 31 RKY C14 H13 SING N N 32 RKY C18 H14 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RKY SMILES ACDLabs 12.01 "c1cc(C(CCC(O)=O)=O)cc2c1OCCCO2" RKY InChI InChI 1.03 "InChI=1S/C13H14O5/c14-10(3-5-13(15)16)9-2-4-11-12(8-9)18-7-1-6-17-11/h2,4,8H,1,3,5-7H2,(H,15,16)" RKY InChIKey InChI 1.03 RQYNFIARXFWNDM-UHFFFAOYSA-N RKY SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCC(=O)c1ccc2OCCCOc2c1" RKY SMILES CACTVS 3.385 "OC(=O)CCC(=O)c1ccc2OCCCOc2c1" RKY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)CCC(=O)O)OCCCO2" RKY SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)CCC(=O)O)OCCCO2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RKY "SYSTEMATIC NAME" ACDLabs 12.01 "4-(3,4-dihydro-2H-1,5-benzodioxepin-7-yl)-4-oxobutanoic acid" RKY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-(3,4-dihydro-2~{H}-1,5-benzodioxepin-7-yl)-4-oxidanylidene-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RKY "Create component" 2020-02-13 RCSB RKY "Initial release" 2020-07-15 RCSB ##