data_RSQ # _chem_comp.id RSQ _chem_comp.name ;5-formylcytidine 5'-(dihydrogen phosphate) ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N3 O9 P" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-01-25 _chem_comp.pdbx_modified_date 2016-02-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 351.207 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RSQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2KRY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RSQ P P P 0 1 N N N 7.999 -8.373 -7.144 4.565 1.248 0.154 P RSQ 1 RSQ N1 N1 N 0 1 N N N 4.121 -12.640 -7.516 -1.995 -0.240 0.186 N1 RSQ 2 RSQ C2 C2 C 0 1 N N N 2.877 -13.260 -7.393 -2.026 0.332 -1.028 C2 RSQ 3 RSQ O2 O2 O 0 1 N N N 2.301 -13.657 -8.415 -1.070 0.189 -1.770 O2 RSQ 4 RSQ N3 N3 N 0 1 N N N 2.334 -13.411 -6.167 -3.064 1.051 -1.451 N3 RSQ 5 RSQ C4 C4 C 0 1 N N N 2.987 -12.977 -5.091 -4.125 1.232 -0.677 C4 RSQ 6 RSQ N4 N4 N 0 1 N N N 2.407 -13.149 -3.911 -5.193 1.973 -1.117 N4 RSQ 7 RSQ C5 C5 C 0 1 N N N 4.263 -12.348 -5.179 -4.135 0.624 0.660 C5 RSQ 8 RSQ C6 C6 C 0 1 N N N 4.784 -12.197 -6.406 -3.025 -0.114 1.046 C6 RSQ 9 RSQ "C1'" "C1'" C 0 1 N N R 4.705 -12.482 -8.858 -0.821 -1.023 0.581 "C1'" RSQ 10 RSQ C10 C10 C 0 1 N N N 5.024 -11.873 -4.034 -5.280 0.791 1.558 C10 RSQ 11 RSQ "C2'" "C2'" C 0 1 N N R 4.194 -11.254 -9.612 -0.638 -2.233 -0.362 "C2'" RSQ 12 RSQ "O2'" "O2'" O 0 1 N N N 4.086 -11.589 -10.983 -1.176 -3.416 0.232 "O2'" RSQ 13 RSQ "C3'" "C3'" C 0 1 N N S 5.314 -10.247 -9.367 0.893 -2.356 -0.523 "C3'" RSQ 14 RSQ "O3'" "O3'" O 0 1 N N N 5.392 -9.271 -10.402 1.348 -3.619 -0.033 "O3'" RSQ 15 RSQ O30 O30 O 0 1 N N N 4.687 -11.947 -2.888 -6.280 1.356 1.167 O30 RSQ 16 RSQ "C4'" "C4'" C 0 1 N N R 6.558 -11.126 -9.331 1.455 -1.206 0.342 "C4'" RSQ 17 RSQ "O4'" "O4'" O 0 1 N N N 6.109 -12.363 -8.722 0.383 -0.241 0.415 "O4'" RSQ 18 RSQ "C5'" "C5'" C 0 1 N N N 7.723 -10.588 -8.531 2.683 -0.586 -0.328 "C5'" RSQ 19 RSQ "O5'" "O5'" O 0 1 N N N 7.256 -9.742 -7.480 3.256 0.394 0.539 "O5'" RSQ 20 RSQ OP1 OP1 O 0 1 N N N 7.689 -7.418 -8.238 4.345 1.934 -1.139 OP1 RSQ 21 RSQ OP2 OP2 O 0 1 N N N 9.415 -8.685 -6.825 4.848 2.342 1.301 OP2 RSQ 22 RSQ OP3 O3P O 0 1 N Y N 7.293 -7.861 -5.790 5.832 0.262 0.029 OP3 RSQ 23 RSQ H6 H6 H 0 1 N N N 5.745 -11.717 -6.519 -2.987 -0.581 2.019 H6 RSQ 24 RSQ "H5'" "H5'" H 0 1 N N N 8.284 -11.429 -8.097 3.418 -1.365 -0.531 "H5'" RSQ 25 RSQ "H1'" "H1'" H 0 1 N N N 4.466 -13.374 -9.456 -0.918 -1.356 1.614 "H1'" RSQ 26 RSQ "H2'" "H2'" H 0 1 N N N 3.244 -10.898 -9.186 -1.109 -2.040 -1.326 "H2'" RSQ 27 RSQ "HO2'" "HO2'" H 0 0 N N N 3.769 -10.837 -11.469 -1.089 -4.207 -0.317 "HO2'" RSQ 28 RSQ H10 H10 H 0 1 N N N 5.979 -11.412 -4.236 -5.234 0.411 2.568 H10 RSQ 29 RSQ "H3'" "H3'" H 0 1 N N N 5.172 -9.770 -8.386 1.180 -2.224 -1.566 "H3'" RSQ 30 RSQ "H4'" "H4'" H 0 1 N N N 6.889 -11.316 -10.363 1.708 -1.569 1.338 "H4'" RSQ 31 RSQ HN4 HN4 H 0 1 N N N 2.865 -12.837 -3.079 -5.995 2.036 -0.575 HN4 RSQ 32 RSQ HN4A HN4A H 0 0 N N N 1.512 -13.591 -3.854 -5.146 2.433 -1.969 HN4A RSQ 33 RSQ "H5'A" "H5'A" H 0 0 N N N 8.383 -10.011 -9.195 2.387 -0.114 -1.265 "H5'A" RSQ 34 RSQ "HO3'" "HO3'" H 0 0 N N N 6.099 -8.665 -10.214 0.978 -4.379 -0.502 "HO3'" RSQ 35 RSQ HOP2 HOP2 H 0 0 N N N 9.986 -8.196 -7.406 5.625 2.894 1.134 HOP2 RSQ 36 RSQ HOP3 H3T H 0 0 N Y N 6.822 -7.054 -5.963 6.035 -0.222 0.841 HOP3 RSQ 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RSQ OP1 P DOUB N N 1 RSQ "O5'" P SING N N 2 RSQ P OP2 SING N N 3 RSQ P OP3 SING N N 4 RSQ "C1'" N1 SING N N 5 RSQ N1 C2 SING N N 6 RSQ N1 C6 SING N N 7 RSQ O2 C2 DOUB N N 8 RSQ C2 N3 SING N N 9 RSQ N3 C4 DOUB N N 10 RSQ C5 C4 SING N N 11 RSQ C4 N4 SING N N 12 RSQ N4 HN4A SING N N 13 RSQ N4 HN4 SING N N 14 RSQ C6 C5 DOUB N N 15 RSQ C5 C10 SING N N 16 RSQ H6 C6 SING N N 17 RSQ "C2'" "C1'" SING N N 18 RSQ "H1'" "C1'" SING N N 19 RSQ "C1'" "O4'" SING N N 20 RSQ H10 C10 SING N N 21 RSQ C10 O30 DOUB N N 22 RSQ "O2'" "C2'" SING N N 23 RSQ "C2'" "C3'" SING N N 24 RSQ "C2'" "H2'" SING N N 25 RSQ "HO2'" "O2'" SING N N 26 RSQ "O3'" "C3'" SING N N 27 RSQ "C3'" "C4'" SING N N 28 RSQ "C3'" "H3'" SING N N 29 RSQ "O3'" "HO3'" SING N N 30 RSQ "H4'" "C4'" SING N N 31 RSQ "C4'" "O4'" SING N N 32 RSQ "C4'" "C5'" SING N N 33 RSQ "H5'" "C5'" SING N N 34 RSQ "C5'" "H5'A" SING N N 35 RSQ "C5'" "O5'" SING N N 36 RSQ OP2 HOP2 SING N N 37 RSQ OP3 HOP3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RSQ SMILES ACDLabs 12.01 "P(O)(O)(OCC2C(C(C(N1C(N=C(N)C(C=O)=C1)=O)O2)O)O)=O" RSQ InChI InChI 1.03 "InChI=1S/C10H14N3O9P/c11-8-4(2-14)1-13(10(17)12-8)9-7(16)6(15)5(22-9)3-21-23(18,19)20/h1-2,5-7,9,15-16H,3H2,(H2,11,12,17)(H2,18,19,20)/t5-,6-,7-,9-/m1/s1" RSQ InChIKey InChI 1.03 ANRZHYHASGTOLD-JXOAFFINSA-N RSQ SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1C=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" RSQ SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1C=O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" RSQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)C=O" RSQ SMILES "OpenEye OEToolkits" 1.7.6 "C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)N)C=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RSQ "SYSTEMATIC NAME" ACDLabs 12.01 ;5-formylcytidine 5'-(dihydrogen phosphate) ; RSQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(4-azanyl-5-methanoyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RSQ "Create component" 2010-01-25 RCSB RSQ "Modify descriptor" 2011-06-04 RCSB RSQ "Modify parent residue" 2016-02-04 RCSB #