data_RU5 # _chem_comp.id RU5 _chem_comp.name "2-[4-(4-CHLOROPHENOXY)PHENYL]-1H-BENZIMIDAZOLE-6-CARBOXAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H14 Cl N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-11-28 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.797 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RU5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4A9R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RU5 C1 C1 C 0 1 N N N -11.851 46.455 2.805 -7.378 1.333 -0.275 C1 RU5 1 RU5 N1 N1 N 0 1 N N N -10.814 45.548 2.354 -8.522 1.082 0.392 N1 RU5 2 RU5 O1 O1 O 0 1 N N N -6.401 50.471 12.462 3.648 -1.855 -0.683 O1 RU5 3 RU5 C2 C2 C 0 1 Y N N -11.738 47.109 4.177 -6.143 0.605 0.078 C2 RU5 4 RU5 C3 C3 C 0 1 Y N N -10.562 47.219 4.749 -4.960 0.865 -0.614 C3 RU5 5 RU5 N3 N3 N 0 1 Y N N -9.340 48.121 6.948 -2.508 0.200 -0.750 N3 RU5 6 RU5 C4 C4 C 0 1 Y N N -10.439 47.874 6.122 -3.807 0.180 -0.277 C4 RU5 7 RU5 N4 N4 N 0 1 Y N N -11.071 48.907 8.041 -2.587 -1.277 0.868 N4 RU5 8 RU5 C5 C5 C 0 1 Y N N -9.797 48.767 8.133 -1.799 -0.711 -0.016 C5 RU5 9 RU5 C6 C6 C 0 1 Y N N -11.503 48.327 6.731 -3.832 -0.774 0.759 C6 RU5 10 RU5 C7 C7 C 0 1 Y N N -12.872 48.200 6.067 -5.030 -1.023 1.444 C7 RU5 11 RU5 C8 C8 C 0 1 Y N N -12.980 47.635 4.885 -6.161 -0.341 1.112 C8 RU5 12 RU5 C9 C9 C 0 1 Y N N -8.914 49.212 9.294 -0.364 -1.012 -0.192 C9 RU5 13 RU5 CLA CLA CL 0 0 N N N -9.392 53.907 16.394 7.525 2.325 0.683 CLA RU5 14 RU5 C10 C10 C 0 1 Y N N -9.514 49.492 10.669 0.256 -1.966 0.619 C10 RU5 15 RU5 C11 C11 C 0 1 Y N N -8.736 49.883 11.656 1.595 -2.244 0.452 C11 RU5 16 RU5 C12 C12 C 0 1 Y N N -7.240 50.069 11.420 2.329 -1.578 -0.522 C12 RU5 17 RU5 C13 C13 C 0 1 Y N N -6.726 49.832 10.235 1.716 -0.628 -1.330 C13 RU5 18 RU5 C14 C14 C 0 1 Y N N -7.626 49.377 9.093 0.376 -0.349 -1.173 C14 RU5 19 RU5 C15 C15 C 0 1 Y N N -7.100 51.266 13.373 4.547 -0.886 -0.367 C15 RU5 20 RU5 C16 C16 C 0 1 Y N N -7.155 52.568 13.199 4.117 0.294 0.224 C16 RU5 21 RU5 C17 C17 C 0 1 Y N N -7.913 53.439 14.196 5.032 1.278 0.545 C17 RU5 22 RU5 C18 C18 C 0 1 Y N N -8.508 52.886 15.230 6.377 1.087 0.278 C18 RU5 23 RU5 C19 C19 C 0 1 Y N N -8.443 51.376 15.434 6.807 -0.089 -0.311 C19 RU5 24 RU5 C20 C20 C 0 1 Y N N -7.789 50.626 14.574 5.896 -1.077 -0.629 C20 RU5 25 RU5 OAB OAB O 0 1 N N N -12.777 46.687 2.106 -7.364 2.154 -1.172 OAB RU5 26 RU5 HN1 HN1 H 0 1 N N N -10.882 45.119 1.453 -8.533 0.424 1.105 HN1 RU5 27 RU5 HN1A HN1A H 0 0 N N N -10.031 45.351 2.944 -9.333 1.560 0.160 HN1A RU5 28 RU5 H3 H3 H 0 1 N N N -9.681 46.846 4.248 -4.945 1.597 -1.408 H3 RU5 29 RU5 HN3 HN3 H 0 1 N N N -8.391 47.884 6.742 -2.164 0.755 -1.468 HN3 RU5 30 RU5 H7 H7 H 0 1 N N N -13.752 48.575 6.569 -5.055 -1.754 2.239 H7 RU5 31 RU5 H8 H8 H 0 1 N N N -13.949 47.544 4.416 -7.079 -0.535 1.646 H8 RU5 32 RU5 H10 H10 H 0 1 N N N -10.575 49.370 10.832 -0.314 -2.484 1.377 H10 RU5 33 RU5 H11 H11 H 0 1 N N N -9.156 50.072 12.633 2.075 -2.981 1.079 H11 RU5 34 RU5 H13 H13 H 0 1 N N N -5.666 49.960 10.070 2.289 -0.112 -2.086 H13 RU5 35 RU5 H14 H14 H 0 1 N N N -7.205 49.190 8.116 -0.101 0.386 -1.805 H14 RU5 36 RU5 H16 H16 H 0 1 N N N -6.664 53.021 12.350 3.068 0.444 0.432 H16 RU5 37 RU5 H17 H17 H 0 1 N N N -7.961 54.508 14.053 4.699 2.196 1.004 H17 RU5 38 RU5 H19 H19 H 0 1 N N N -8.933 50.923 16.283 7.857 -0.236 -0.519 H19 RU5 39 RU5 H20 H20 H 0 1 N N N -7.740 49.557 14.718 6.233 -1.997 -1.084 H20 RU5 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RU5 C1 N1 SING N N 1 RU5 C1 C2 SING N N 2 RU5 C1 OAB DOUB N N 3 RU5 O1 C12 SING N N 4 RU5 O1 C15 SING N N 5 RU5 C2 C3 DOUB Y N 6 RU5 C2 C8 SING Y N 7 RU5 C3 C4 SING Y N 8 RU5 N3 C4 SING Y N 9 RU5 N3 C5 SING Y N 10 RU5 C4 C6 DOUB Y N 11 RU5 N4 C5 DOUB Y N 12 RU5 N4 C6 SING Y N 13 RU5 C5 C9 SING N N 14 RU5 C6 C7 SING Y N 15 RU5 C7 C8 DOUB Y N 16 RU5 C9 C10 DOUB Y N 17 RU5 C9 C14 SING Y N 18 RU5 CLA C18 SING N N 19 RU5 C10 C11 SING Y N 20 RU5 C11 C12 DOUB Y N 21 RU5 C12 C13 SING Y N 22 RU5 C13 C14 DOUB Y N 23 RU5 C15 C16 DOUB Y N 24 RU5 C15 C20 SING Y N 25 RU5 C16 C17 SING Y N 26 RU5 C17 C18 DOUB Y N 27 RU5 C18 C19 SING Y N 28 RU5 C19 C20 DOUB Y N 29 RU5 N1 HN1 SING N N 30 RU5 N1 HN1A SING N N 31 RU5 C3 H3 SING N N 32 RU5 N3 HN3 SING N N 33 RU5 C7 H7 SING N N 34 RU5 C8 H8 SING N N 35 RU5 C10 H10 SING N N 36 RU5 C11 H11 SING N N 37 RU5 C13 H13 SING N N 38 RU5 C14 H14 SING N N 39 RU5 C16 H16 SING N N 40 RU5 C17 H17 SING N N 41 RU5 C19 H19 SING N N 42 RU5 C20 H20 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RU5 SMILES ACDLabs 12.01 "Clc4ccc(Oc3ccc(c2nc1ccc(cc1n2)C(=O)N)cc3)cc4" RU5 InChI InChI 1.03 "InChI=1S/C20H14ClN3O2/c21-14-4-8-16(9-5-14)26-15-6-1-12(2-7-15)20-23-17-10-3-13(19(22)25)11-18(17)24-20/h1-11H,(H2,22,25)(H,23,24)" RU5 InChIKey InChI 1.03 UXGJAOIJSROTTN-UHFFFAOYSA-N RU5 SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc2nc([nH]c2c1)c3ccc(Oc4ccc(Cl)cc4)cc3" RU5 SMILES CACTVS 3.385 "NC(=O)c1ccc2nc([nH]c2c1)c3ccc(Oc4ccc(Cl)cc4)cc3" RU5 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1c2[nH]c3cc(ccc3n2)C(=O)N)Oc4ccc(cc4)Cl" RU5 SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1c2[nH]c3cc(ccc3n2)C(=O)N)Oc4ccc(cc4)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RU5 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[4-(4-chlorophenoxy)phenyl]-1H-benzimidazole-6-carboxamide" RU5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[4-(4-chloranylphenoxy)phenyl]-3H-benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RU5 "Create component" 2011-11-28 EBI RU5 "Initial release" 2012-10-05 RCSB RU5 "Modify descriptor" 2014-09-05 RCSB #