data_RYB # _chem_comp.id RYB _chem_comp.name "1-{[(3'S)-6-chloro-1'-{6-[2-(dimethylamino)ethoxy]isoquinolin-4-yl}-2'-oxo-1H-spiro[isoquinoline-4,3'-pyrrolidine]-2(3H)-sulfonyl]methyl}cyclopropane-1-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H32 Cl N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-22 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 594.124 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RYB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GNH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RYB N1 N1 N 0 1 Y N N N N N -16.965 3.566 26.418 0.761 4.976 -1.094 N1 RYB 1 RYB N3 N2 N 0 1 N N N N N N -21.668 6.724 30.887 -3.070 -1.150 -0.489 N3 RYB 2 RYB C4 C1 C 0 1 Y N N N N N -18.540 8.354 26.145 3.682 1.491 0.859 C4 RYB 3 RYB C5 C2 C 0 1 Y N N N N N -17.263 8.325 25.587 4.197 2.721 1.277 C5 RYB 4 RYB C6 C3 C 0 1 Y N N N N N -16.575 7.150 25.506 3.610 3.891 0.904 C6 RYB 5 RYB C7 C4 C 0 1 Y N N N N N -17.143 5.943 25.981 2.469 3.864 0.086 C7 RYB 6 RYB C8 C5 C 0 1 Y N N N N N -16.461 4.701 25.953 1.825 5.040 -0.329 C8 RYB 7 RYB C10 C6 C 0 1 Y N N N N N -18.983 4.751 27.067 0.797 2.617 -1.161 C10 RYB 8 RYB C13 C7 C 0 1 N N S N N N -21.842 4.705 29.490 -1.094 -0.503 -1.733 C13 RYB 9 RYB C15 C8 C 0 1 N N N N N N -22.161 6.091 32.117 -2.609 -2.480 -0.078 C15 RYB 10 RYB C17 C9 C 0 1 Y N N N N N -22.116 3.830 33.198 -0.472 -3.717 0.172 C17 RYB 11 RYB C20 C10 C 0 1 Y N N N N N -22.021 2.518 30.757 0.907 -1.913 -1.383 C20 RYB 12 RYB C21 C11 C 0 1 Y N N N N N -22.026 3.913 30.789 -0.446 -1.714 -1.140 C21 RYB 13 RYB C22 C12 C 0 1 N N N N N N -19.093 7.599 30.757 -5.733 -0.847 0.101 C22 RYB 14 RYB C24 C13 C 0 1 N N N N N N -17.115 8.847 29.527 -8.208 -0.594 0.910 C24 RYB 15 RYB C26 C14 C 0 1 N N N N N N -17.415 8.848 32.081 -6.431 1.168 1.480 C26 RYB 16 RYB C28 C15 C 0 1 Y N N N N N -18.449 5.972 26.553 1.946 2.615 -0.339 C28 RYB 17 RYB O3 O1 O 0 1 N N N N N N -19.429 4.735 29.934 -1.196 1.056 0.113 O3 RYB 18 RYB C27 C16 C 0 1 N N N N N N -20.349 4.719 29.141 -0.714 0.731 -0.952 C27 RYB 19 RYB C19 C17 C 0 1 Y N N N N N -22.024 1.812 31.945 1.565 -3.004 -0.854 C19 RYB 20 RYB CL CL1 CL 0 0 N N N N N N -21.975 0.070 31.892 3.256 -3.239 -1.168 CL RYB 21 RYB C18 C18 C 0 1 Y N N N N N -22.062 2.449 33.165 0.872 -3.910 -0.070 C18 RYB 22 RYB C16 C19 C 0 1 Y N N N N N -22.096 4.580 32.023 -1.136 -2.623 -0.366 C16 RYB 23 RYB S S1 S 0 1 N N N N N N -20.794 8.098 30.933 -4.064 -0.246 0.480 S RYB 24 RYB O2 O2 O 0 1 N N N N N N -20.969 8.667 32.232 -3.691 -0.610 1.801 O2 RYB 25 RYB C23 C20 C 0 1 N N N N N N -17.989 8.648 30.746 -6.735 -0.211 1.068 C23 RYB 26 RYB N4 N3 N 0 1 N N N N N N -16.980 8.955 33.127 -6.197 2.233 1.799 N4 RYB 27 RYB C25 C21 C 0 1 N N N N N N -18.122 9.877 29.873 -7.402 -1.127 2.096 C25 RYB 28 RYB O1 O3 O 0 1 N N N N N N -21.153 8.866 29.782 -3.895 1.085 0.011 O1 RYB 29 RYB C14 C22 C 0 1 N N N N N N -22.286 6.180 29.666 -2.610 -0.647 -1.795 C14 RYB 30 RYB C12 C23 C 0 1 N N N N N N -22.454 4.054 28.228 -0.533 -0.255 -3.148 C12 RYB 31 RYB C11 C24 C 0 1 N N N N N N -21.514 4.472 27.101 0.610 0.746 -2.861 C11 RYB 32 RYB N2 N4 N 0 1 N N N N N N -20.225 4.669 27.784 0.237 1.418 -1.610 N2 RYB 33 RYB C9 C25 C 0 1 Y N N N N N -18.195 3.610 26.951 0.242 3.829 -1.511 C9 RYB 34 RYB C29 C26 C 0 1 Y N N N N N -19.132 7.209 26.620 2.572 1.429 0.062 C29 RYB 35 RYB O O4 O 0 1 N N N N N N -19.133 9.595 26.181 4.292 0.341 1.249 O RYB 36 RYB C3 C27 C 0 1 N N N N N N -20.339 9.767 26.954 5.447 0.469 2.080 C3 RYB 37 RYB C2 C28 C 0 1 N N N N N N -21.035 11.032 26.503 5.992 -0.921 2.414 C2 RYB 38 RYB N N5 N 0 1 N N N N N N -20.865 12.159 27.426 6.469 -1.568 1.185 N RYB 39 RYB C1 C29 C 0 1 N N N N N N -22.159 12.600 27.939 7.631 -0.860 0.633 C1 RYB 40 RYB C C30 C 0 1 N N N N N N -20.179 13.273 26.776 6.778 -2.984 1.421 C RYB 41 RYB H1 H1 H 0 1 N N N N N N -16.817 9.236 25.217 5.075 2.744 1.906 H1 RYB 42 RYB H2 H2 H 0 1 N N N N N N -15.585 7.140 25.074 4.019 4.834 1.235 H2 RYB 43 RYB H3 H3 H 0 1 N N N N N N -15.469 4.677 25.526 2.207 6.001 -0.017 H3 RYB 44 RYB H4 H4 H 0 1 N N N N N N -21.543 6.424 32.964 -2.783 -2.609 0.991 H4 RYB 45 RYB H5 H5 H 0 1 N N N N N N -23.205 6.395 32.283 -3.160 -3.241 -0.629 H5 RYB 46 RYB H6 H6 H 0 1 N N N N N N -22.175 4.336 34.150 -1.013 -4.424 0.784 H6 RYB 47 RYB H7 H7 H 0 1 N N N N N N -22.015 1.995 29.812 1.451 -1.204 -1.990 H7 RYB 48 RYB H8 H8 H 0 1 N N N N N N -19.020 7.051 29.806 -5.994 -0.576 -0.922 H8 RYB 49 RYB H9 H9 H 0 1 N N N N N N -18.874 6.917 31.592 -5.762 -1.931 0.208 H9 RYB 50 RYB H10 H10 H 0 1 N N N N N N -17.261 8.215 28.639 -8.952 0.176 1.113 H10 RYB 51 RYB H11 H11 H 0 1 N N N N N N -16.044 9.065 29.650 -8.464 -1.298 0.119 H11 RYB 52 RYB H12 H12 H 0 1 N N N N N N -22.050 1.879 34.082 1.382 -4.764 0.351 H12 RYB 53 RYB H13 H13 H 0 1 N N N N N N -17.796 10.857 30.252 -7.615 -0.707 3.079 H13 RYB 54 RYB H14 H14 H 0 1 N N N N N N -19.013 10.007 29.241 -7.127 -2.181 2.085 H14 RYB 55 RYB H15 H15 H 0 1 N N N N N N -21.963 6.769 28.795 -2.882 -1.352 -2.580 H15 RYB 56 RYB H16 H16 H 0 1 N N N N N N -23.381 6.227 29.754 -3.065 0.324 -1.996 H16 RYB 57 RYB H17 H17 H 0 1 N N N N N N -23.471 4.431 28.048 -0.144 -1.176 -3.582 H17 RYB 58 RYB H18 H18 H 0 1 N N N N N N -22.481 2.959 28.328 -1.288 0.190 -3.795 H18 RYB 59 RYB H19 H19 H 0 1 N N N N N N -21.856 5.405 26.630 1.554 0.216 -2.737 H19 RYB 60 RYB H20 H20 H 0 1 N N N N N N -21.438 3.682 26.339 0.688 1.472 -3.670 H20 RYB 61 RYB H21 H21 H 0 1 N N N N N N -18.608 2.683 27.321 -0.636 3.846 -2.139 H21 RYB 62 RYB H22 H22 H 0 1 N N N N N N -20.123 7.253 27.046 2.182 0.473 -0.256 H22 RYB 63 RYB H23 H23 H 0 1 N N N N N N -21.004 8.904 26.798 6.211 1.043 1.556 H23 RYB 64 RYB H24 H24 H 0 1 N N N N N N -20.085 9.846 28.021 5.175 0.984 3.002 H24 RYB 65 RYB H25 H25 H 0 1 N N N N N N -20.629 11.321 25.523 6.818 -0.828 3.119 H25 RYB 66 RYB H26 H26 H 0 1 N N N N N N -22.110 10.821 26.406 5.201 -1.524 2.859 H26 RYB 67 RYB H28 H28 H 0 1 N N N N N N -22.012 13.444 28.628 8.439 -0.863 1.366 H28 RYB 68 RYB H29 H29 H 0 1 N N N N N N -22.797 12.918 27.101 7.964 -1.360 -0.276 H29 RYB 69 RYB H30 H30 H 0 1 N N N N N N -22.643 11.770 28.474 7.354 0.169 0.402 H30 RYB 70 RYB H31 H31 H 0 1 N N N N N N -20.066 14.102 27.490 5.881 -3.500 1.763 H31 RYB 71 RYB H32 H32 H 0 1 N N N N N N -19.186 12.944 26.436 7.129 -3.439 0.495 H32 RYB 72 RYB H33 H33 H 0 1 N N N N N N -20.769 13.612 25.912 7.555 -3.064 2.182 H33 RYB 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RYB C6 C5 DOUB Y N 1 RYB C6 C7 SING Y N 2 RYB C5 C4 SING Y N 3 RYB C8 C7 DOUB Y N 4 RYB C8 N1 SING Y N 5 RYB C7 C28 SING Y N 6 RYB C4 O SING N N 7 RYB C4 C29 DOUB Y N 8 RYB O C3 SING N N 9 RYB N1 C9 DOUB Y N 10 RYB C2 C3 SING N N 11 RYB C2 N SING N N 12 RYB C28 C29 SING Y N 13 RYB C28 C10 DOUB Y N 14 RYB C N SING N N 15 RYB C9 C10 SING Y N 16 RYB C10 N2 SING N N 17 RYB C11 N2 SING N N 18 RYB C11 C12 SING N N 19 RYB N C1 SING N N 20 RYB N2 C27 SING N N 21 RYB C12 C13 SING N N 22 RYB C27 C13 SING N N 23 RYB C27 O3 DOUB N N 24 RYB C13 C14 SING N N 25 RYB C13 C21 SING N N 26 RYB C24 C25 SING N N 27 RYB C24 C23 SING N N 28 RYB C14 N3 SING N N 29 RYB O1 S DOUB N N 30 RYB C25 C23 SING N N 31 RYB C23 C22 SING N N 32 RYB C23 C26 SING N N 33 RYB C22 S SING N N 34 RYB C20 C21 DOUB Y N 35 RYB C20 C19 SING Y N 36 RYB C21 C16 SING Y N 37 RYB N3 S SING N N 38 RYB N3 C15 SING N N 39 RYB S O2 DOUB N N 40 RYB CL C19 SING N N 41 RYB C19 C18 DOUB Y N 42 RYB C16 C15 SING N N 43 RYB C16 C17 DOUB Y N 44 RYB C26 N4 TRIP N N 45 RYB C18 C17 SING Y N 46 RYB C5 H1 SING N N 47 RYB C6 H2 SING N N 48 RYB C8 H3 SING N N 49 RYB C15 H4 SING N N 50 RYB C15 H5 SING N N 51 RYB C17 H6 SING N N 52 RYB C20 H7 SING N N 53 RYB C22 H8 SING N N 54 RYB C22 H9 SING N N 55 RYB C24 H10 SING N N 56 RYB C24 H11 SING N N 57 RYB C18 H12 SING N N 58 RYB C25 H13 SING N N 59 RYB C25 H14 SING N N 60 RYB C14 H15 SING N N 61 RYB C14 H16 SING N N 62 RYB C12 H17 SING N N 63 RYB C12 H18 SING N N 64 RYB C11 H19 SING N N 65 RYB C11 H20 SING N N 66 RYB C9 H21 SING N N 67 RYB C29 H22 SING N N 68 RYB C3 H23 SING N N 69 RYB C3 H24 SING N N 70 RYB C2 H25 SING N N 71 RYB C2 H26 SING N N 72 RYB C1 H28 SING N N 73 RYB C1 H29 SING N N 74 RYB C1 H30 SING N N 75 RYB C H31 SING N N 76 RYB C H32 SING N N 77 RYB C H33 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RYB SMILES ACDLabs 12.01 "CN(C)CCOc1cc2c(cc1)cncc2N1CCC2(CN(Cc3ccc(Cl)cc32)S(=O)(=O)CC2(C#N)CC2)C1=O" RYB InChI InChI 1.06 "InChI=1S/C30H32ClN5O4S/c1-34(2)11-12-40-24-6-4-21-15-33-16-27(25(21)14-24)36-10-9-30(28(36)37)19-35(17-22-3-5-23(31)13-26(22)30)41(38,39)20-29(18-32)7-8-29/h3-6,13-16H,7-12,17,19-20H2,1-2H3/t30-/m1/s1" RYB InChIKey InChI 1.06 FLBSSPVVUCLCOS-SSEXGKCCSA-N RYB SMILES_CANONICAL CACTVS 3.385 "CN(C)CCOc1ccc2cncc(N3CC[C@]4(CN(Cc5ccc(Cl)cc45)[S](=O)(=O)CC6(CC6)C#N)C3=O)c2c1" RYB SMILES CACTVS 3.385 "CN(C)CCOc1ccc2cncc(N3CC[C]4(CN(Cc5ccc(Cl)cc45)[S](=O)(=O)CC6(CC6)C#N)C3=O)c2c1" RYB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCOc1ccc2cncc(c2c1)N3CC[C@@]4(C3=O)CN(Cc5c4cc(cc5)Cl)S(=O)(=O)CC6(CC6)C#N" RYB SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCOc1ccc2cncc(c2c1)N3CCC4(C3=O)CN(Cc5c4cc(cc5)Cl)S(=O)(=O)CC6(CC6)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RYB "SYSTEMATIC NAME" ACDLabs 12.01 "1-{[(3'S)-6-chloro-1'-{6-[2-(dimethylamino)ethoxy]isoquinolin-4-yl}-2'-oxo-1H-spiro[isoquinoline-4,3'-pyrrolidine]-2(3H)-sulfonyl]methyl}cyclopropane-1-carbonitrile" RYB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[[(4~{S})-6-chloranyl-1'-[6-[2-(dimethylamino)ethoxy]isoquinolin-4-yl]-2'-oxidanylidene-spiro[1,3-dihydroisoquinoline-4,3'-pyrrolidine]-2-yl]sulfonylmethyl]cyclopropane-1-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RYB "Create component" 2023-08-22 RCSB RYB "Initial release" 2023-11-08 RCSB #