data_RYT # _chem_comp.id RYT _chem_comp.name pentadecaphosphate _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "H17 O46 P15" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "bis[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-04 _chem_comp.pdbx_modified_date 2021-05-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1217.714 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RYT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AUS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RYT O22 O1 O 0 1 N N N 3.760 -29.471 12.246 -1.705 6.899 -2.451 O22 RYT 1 RYT P02 P1 P 0 1 N N N 3.984 -28.017 12.654 -1.518 6.917 -0.983 P02 RYT 2 RYT O32 O2 O 0 1 N N N 3.419 -27.628 13.963 -1.717 8.418 -0.435 O32 RYT 3 RYT O12 O3 O 0 1 N N N 5.552 -27.756 12.612 -2.601 5.946 -0.292 O12 RYT 4 RYT O13 O4 O 0 1 N N N 3.430 -27.102 11.474 -0.034 6.406 -0.625 O13 RYT 5 RYT P03 P2 P 0 1 N N N 2.200 -26.094 11.522 1.430 6.720 -1.217 P03 RYT 6 RYT O33 O5 O 0 1 N N N 2.686 -24.783 10.900 1.355 6.812 -2.693 O33 RYT 7 RYT O23 O6 O 0 1 N N N 1.599 -25.984 12.868 1.964 8.115 -0.618 O23 RYT 8 RYT O14 O7 O 0 1 N N N 1.164 -26.758 10.512 2.441 5.536 -0.804 O14 RYT 9 RYT P04 P3 P 0 1 N N N 0.410 -26.041 9.309 3.903 5.088 -1.306 P04 RYT 10 RYT O34 O8 O 0 1 N N N -0.132 -24.716 9.855 3.779 4.360 -2.737 O34 RYT 11 RYT O24 O9 O 0 1 N N N -0.593 -26.925 8.671 4.768 6.282 -1.434 O24 RYT 12 RYT O15 O10 O 0 1 N N N 1.651 -25.704 8.367 4.548 4.069 -0.239 O15 RYT 13 RYT P05 P4 P 0 1 N N N 2.008 -25.939 6.833 6.051 3.589 0.081 P05 RYT 14 RYT O35 O11 O 0 1 N N N 1.080 -27.040 6.314 6.791 3.403 -1.187 O35 RYT 15 RYT O25 O12 O 0 1 N N N 3.454 -26.178 6.626 6.792 4.705 0.975 O25 RYT 16 RYT O16 O13 O 0 1 N N N 1.527 -24.568 6.180 6.009 2.197 0.888 O16 RYT 17 RYT P06 P5 P 0 1 N N N 1.303 -23.080 6.707 7.105 1.067 1.227 P06 RYT 18 RYT O36 O14 O 0 1 N N N 0.065 -22.521 5.997 7.971 0.850 0.047 O36 RYT 19 RYT O26 O15 O 0 1 N N N 1.293 -22.970 8.184 8.005 1.549 2.472 O26 RYT 20 RYT O17 O16 O 0 1 N N N 2.566 -22.336 6.092 6.359 -0.309 1.605 O17 RYT 21 RYT P07 P6 P 0 1 N N N 3.287 -20.971 6.477 6.836 -1.840 1.736 P07 RYT 22 RYT O37 O17 O 0 1 N N N 2.522 -19.796 5.997 7.786 -2.156 0.646 O37 RYT 23 RYT O27 O18 O 0 1 N N N 3.599 -21.035 7.977 7.560 -2.057 3.158 O27 RYT 24 RYT O18 O19 O 0 1 N N N 4.660 -21.117 5.686 5.557 -2.812 1.632 O18 RYT 25 RYT P08 P7 P 0 1 N N N 4.941 -21.156 4.121 5.370 -4.392 1.384 P08 RYT 26 RYT O38 O20 O 0 1 N N N 3.593 -21.038 3.417 6.337 -4.849 0.361 O38 RYT 27 RYT O28 O21 O 0 1 N N N 5.830 -22.283 3.750 5.629 -5.185 2.761 O28 RYT 28 RYT O19 O22 O 0 1 N N N 5.669 -19.760 3.917 3.871 -4.681 0.873 O19 RYT 29 RYT P09 P8 P 0 1 N N N 6.795 -19.329 2.882 3.150 -5.942 0.177 P09 RYT 30 RYT O39 O23 O 0 1 N N N 6.836 -20.223 1.702 4.064 -6.545 -0.819 O39 RYT 31 RYT O29 O24 O 0 1 N N N 6.579 -17.833 2.599 2.782 -7.036 1.299 O29 RYT 32 RYT O40 O25 O 0 1 N N N 8.101 -19.451 3.777 1.804 -5.452 -0.557 O40 RYT 33 RYT P10 P9 P 0 1 N N N 9.580 -19.884 3.407 0.823 -6.111 -1.651 P10 RYT 34 RYT O60 O26 O 0 1 N N N 10.077 -20.896 4.340 1.524 -6.060 -3.100 O60 RYT 35 RYT O50 O27 O 0 1 N N N 9.606 -20.200 1.903 0.550 -7.518 -1.285 O50 RYT 36 RYT O41 O28 O 0 1 N N N 10.382 -18.517 3.533 -0.561 -5.289 -1.696 O41 RYT 37 RYT P11 P10 P 0 1 N N N 10.975 -17.731 4.776 -2.045 -5.626 -2.222 P11 RYT 38 RYT O61 O29 O 0 1 N N N 10.457 -18.437 6.024 -2.068 -5.575 -3.831 O61 RYT 39 RYT O51 O30 O 0 1 N N N 12.429 -17.612 4.673 -2.435 -6.979 -1.765 O51 RYT 40 RYT O42 O31 O 0 1 N N N 10.157 -16.377 4.658 -3.081 -4.542 -1.636 O42 RYT 41 RYT P12 P11 P 0 1 N N N 10.604 -14.942 4.152 -4.677 -4.519 -1.429 P12 RYT 42 RYT O62 O32 O 0 1 N N N 10.081 -13.939 5.182 -5.400 -4.306 -2.852 O62 RYT 43 RYT O52 O33 O 0 1 N N N 12.056 -14.938 3.901 -5.117 -5.803 -0.839 O52 RYT 44 RYT O43 O34 O 0 1 N N N 9.731 -14.758 2.833 -5.072 -3.311 -0.440 O43 RYT 45 RYT P13 P12 P 0 1 N N N 9.987 -14.907 1.266 -6.360 -2.986 0.470 P13 RYT 46 RYT O63 O35 O 0 1 N N N 8.697 -15.433 0.637 -7.590 -3.354 -0.267 O63 RYT 47 RYT O53 O36 O 0 1 N N N 11.188 -15.707 0.951 -6.280 -3.834 1.836 O53 RYT 48 RYT O44 O37 O 0 1 N N N 10.125 -13.389 0.802 -6.391 -1.414 0.815 O44 RYT 49 RYT P14 P13 P 0 1 N N N 11.176 -12.218 1.050 -7.516 -0.418 1.393 P14 RYT 50 RYT O64 O38 O 0 1 N N N 12.491 -12.850 1.540 -8.590 -0.093 0.239 O64 RYT 51 RYT O54 O39 O 0 1 N N N 11.279 -11.350 -0.138 -8.201 -1.058 2.538 O54 RYT 52 RYT O45 O40 O 0 1 N N N 10.518 -11.469 2.293 -6.822 0.951 1.880 O45 RYT 53 RYT P15 P14 P 0 1 N N N 9.059 -10.927 2.657 -7.262 2.135 2.878 P15 RYT 54 RYT O65 O41 O 0 1 N N N 8.746 -9.696 1.859 -8.700 2.430 2.689 O65 RYT 55 RYT O55 O42 O 0 1 N N N 8.958 -10.679 4.173 -7.004 1.677 4.400 O55 RYT 56 RYT O75 O43 O 0 1 N N N 8.124 -12.105 2.310 -6.397 3.454 2.560 O75 RYT 57 RYT P01 P15 P 0 1 N N N 6.600 -28.236 13.712 -4.159 5.640 -0.558 P01 RYT 58 RYT O21 O44 O 0 1 N N N 6.944 -27.065 14.644 -5.047 6.868 -0.013 O21 RYT 59 RYT O11 O45 O 0 1 N N N 7.787 -28.844 13.060 -4.389 5.472 -2.010 O11 RYT 60 RYT O31 O46 O 0 1 N N N 5.821 -29.266 14.542 -4.580 4.291 0.213 O31 RYT 61 RYT H1 H1 H 0 1 N N N 2.988 -28.377 14.358 -1.608 8.504 0.522 H1 RYT 62 RYT H2 H2 H 0 1 N N N 1.610 -25.076 13.147 2.038 8.127 0.346 H2 RYT 63 RYT H3 H3 H 0 1 N N N -1.067 -24.665 9.693 3.225 3.567 -2.728 H3 RYT 64 RYT H4 H4 H 0 1 N N N 3.578 -27.011 6.186 6.361 4.879 1.823 H4 RYT 65 RYT H5 H5 H 0 1 N N N 0.487 -22.553 8.466 7.502 1.711 3.282 H5 RYT 66 RYT H6 H6 H 0 1 N N N 3.238 -20.270 8.409 6.996 -1.868 3.919 H6 RYT 67 RYT H7 H7 H 0 1 N N N 5.410 -22.811 3.081 5.030 -4.936 3.478 H7 RYT 68 RYT H8 H8 H 0 1 N N N 6.500 -17.696 1.662 2.184 -6.709 1.986 H8 RYT 69 RYT H9 H9 H 0 1 N N N 10.366 -21.660 3.855 1.732 -5.166 -3.405 H9 RYT 70 RYT H10 H10 H 0 1 N N N 11.191 -18.702 6.566 -1.822 -4.716 -4.201 H10 RYT 71 RYT H11 H11 H 0 1 N N N 10.806 -13.433 5.528 -5.158 -3.482 -3.296 H11 RYT 72 RYT H12 H12 H 0 1 N N N 10.946 -16.436 0.393 -5.497 -3.644 2.371 H12 RYT 73 RYT H13 H13 H 0 1 N N N 13.205 -12.573 0.977 -8.211 0.329 -0.544 H13 RYT 74 RYT H14 H14 H 0 1 N N N 8.711 -9.775 4.331 -6.081 1.467 4.597 H14 RYT 75 RYT H15 H15 H 0 1 N N N 7.507 -11.833 1.641 -6.610 4.210 3.125 H15 RYT 76 RYT H16 H16 H 0 1 N N N 7.884 -26.926 14.644 -4.947 7.037 0.934 H16 RYT 77 RYT H17 H17 H 0 1 N N N 6.250 -30.111 14.482 -5.508 4.045 0.097 H17 RYT 78 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RYT O54 P14 DOUB N N 1 RYT O63 P13 DOUB N N 2 RYT O44 P14 SING N N 3 RYT O44 P13 SING N N 4 RYT O53 P13 SING N N 5 RYT P14 O64 SING N N 6 RYT P14 O45 SING N N 7 RYT P13 O43 SING N N 8 RYT O39 P09 DOUB N N 9 RYT O65 P15 DOUB N N 10 RYT O50 P10 DOUB N N 11 RYT O45 P15 SING N N 12 RYT O75 P15 SING N N 13 RYT O29 P09 SING N N 14 RYT P15 O55 SING N N 15 RYT O43 P12 SING N N 16 RYT P09 O40 SING N N 17 RYT P09 O19 SING N N 18 RYT P10 O41 SING N N 19 RYT P10 O40 SING N N 20 RYT P10 O60 SING N N 21 RYT O38 P08 DOUB N N 22 RYT O41 P11 SING N N 23 RYT O28 P08 SING N N 24 RYT O52 P12 DOUB N N 25 RYT O19 P08 SING N N 26 RYT P08 O18 SING N N 27 RYT P12 O42 SING N N 28 RYT P12 O62 SING N N 29 RYT O42 P11 SING N N 30 RYT O51 P11 DOUB N N 31 RYT P11 O61 SING N N 32 RYT O18 P07 SING N N 33 RYT O37 P07 DOUB N N 34 RYT O36 P06 DOUB N N 35 RYT O17 P07 SING N N 36 RYT O17 P06 SING N N 37 RYT O16 P06 SING N N 38 RYT O16 P05 SING N N 39 RYT O35 P05 DOUB N N 40 RYT P07 O27 SING N N 41 RYT O25 P05 SING N N 42 RYT P06 O26 SING N N 43 RYT P05 O15 SING N N 44 RYT O15 P04 SING N N 45 RYT O24 P04 DOUB N N 46 RYT P04 O34 SING N N 47 RYT P04 O14 SING N N 48 RYT O14 P03 SING N N 49 RYT O33 P03 DOUB N N 50 RYT O13 P03 SING N N 51 RYT O13 P02 SING N N 52 RYT P03 O23 SING N N 53 RYT O22 P02 DOUB N N 54 RYT O12 P02 SING N N 55 RYT O12 P01 SING N N 56 RYT P02 O32 SING N N 57 RYT O11 P01 DOUB N N 58 RYT P01 O31 SING N N 59 RYT P01 O21 SING N N 60 RYT O32 H1 SING N N 61 RYT O23 H2 SING N N 62 RYT O34 H3 SING N N 63 RYT O25 H4 SING N N 64 RYT O26 H5 SING N N 65 RYT O27 H6 SING N N 66 RYT O28 H7 SING N N 67 RYT O29 H8 SING N N 68 RYT O60 H9 SING N N 69 RYT O61 H10 SING N N 70 RYT O62 H11 SING N N 71 RYT O53 H12 SING N N 72 RYT O64 H13 SING N N 73 RYT O55 H14 SING N N 74 RYT O75 H15 SING N N 75 RYT O21 H16 SING N N 76 RYT O31 H17 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RYT InChI InChI 1.03 "InChI=1S/H17O46P15/c1-47(2,3)33-49(7,8)35-51(11,12)37-53(15,16)39-55(19,20)41-57(23,24)43-59(27,28)45-61(31,32)46-60(29,30)44-58(25,26)42-56(21,22)40-54(17,18)38-52(13,14)36-50(9,10)34-48(4,5)6/h(H,7,8)(H,9,10)(H,11,12)(H,13,14)(H,15,16)(H,17,18)(H,19,20)(H,21,22)(H,23,24)(H,25,26)(H,27,28)(H,29,30)(H,31,32)(H2,1,2,3)(H2,4,5,6)" RYT InChIKey InChI 1.03 NXNVLMOFLGVRFT-UHFFFAOYSA-N RYT SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O" RYT SMILES CACTVS 3.385 "O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O" RYT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)O" RYT SMILES "OpenEye OEToolkits" 2.0.7 "OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id RYT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "bis[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RYT _pdbx_chem_comp_synonyms.name "bis[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RYT "Create component" 2020-11-04 PDBE RYT "Initial release" 2021-05-19 RCSB RYT "Modify name" 2021-05-20 PDBE ##