data_S0Q # _chem_comp.id S0Q _chem_comp.name "2-(1-hydroxy-6-((2-(4-methyl-3-oxopiperazin-1-yl)-2-oxoethyl)carbamoyl)-1,3-dihydrobenzo[c][1,2]oxaborol-3-yl)acetic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H20 B N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-[(3S)-6-[[2-(4-methyl-3-oxidanylidene-piperazin-1-yl)-2-oxidanylidene-ethyl]carbamoyl]-1-oxidanyl-3H-2,1-benzoxaborol-3-yl]ethanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.168 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S0Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7AU8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S0Q C1 C1 C 0 1 N N N N N N 9.024 -1.031 -16.580 ? ? ? C1 S0Q 1 S0Q N1 N1 N 0 1 N N N N N N 11.389 -0.572 -16.893 ? ? ? N1 S0Q 2 S0Q O1 O1 O 0 1 N N N N N N 14.676 0.123 -18.153 ? ? ? O1 S0Q 3 S0Q C2 C2 C 0 1 N N N N N N 10.129 -0.105 -16.754 ? ? ? C2 S0Q 4 S0Q N2 N2 N 0 1 N N N N N N 13.996 -0.762 -16.178 ? ? ? N2 S0Q 5 S0Q O2 O2 O 0 1 N N N N N N 9.873 1.085 -16.829 ? ? ? O2 S0Q 6 S0Q C3 C3 C 0 1 N N N N N N 12.369 0.312 -17.530 ? ? ? C3 S0Q 7 S0Q O3 O3 O 0 1 N N N N N N 3.127 4.786 -17.759 ? ? ? O3 S0Q 8 S0Q C4 C4 C 0 1 N N N N N N 13.802 -0.089 -17.314 ? ? ? C4 S0Q 9 S0Q O4 O4 O 0 1 N N N N N N -0.620 3.494 -15.555 ? ? ? O4 S0Q 10 S0Q C5 C5 C 0 1 N N N N N N 13.185 -1.908 -15.777 ? ? ? C5 S0Q 11 S0Q O5 O5 O 0 1 N N N N N N 1.301 3.666 -14.424 ? ? ? O5 S0Q 12 S0Q C7 C6 C 0 1 N N N N N N 14.969 -0.294 -15.198 ? ? ? C7 S0Q 13 S0Q C9 C7 C 0 1 Y N N N N N 5.004 0.718 -16.393 ? ? ? C9 S0Q 14 S0Q C10 C8 C 0 1 Y N N N N N 3.915 1.547 -16.201 ? ? ? C10 S0Q 15 S0Q C11 C9 C 0 1 Y N N N N N 3.794 2.701 -16.968 ? ? ? C11 S0Q 16 S0Q C12 C10 C 0 1 Y N N N N N 4.727 3.029 -17.946 ? ? ? C12 S0Q 17 S0Q C14 C11 C 0 1 N N N N N N 1.325 3.437 -16.833 ? ? ? C14 S0Q 18 S0Q C15 C12 C 0 1 N N N N N N 0.675 3.553 -15.479 ? ? ? C15 S0Q 19 S0Q C16 C13 C 0 1 Y N N N N N 5.811 2.178 -18.127 ? ? ? C16 S0Q 20 S0Q C13 C14 C 0 1 N N S N N N 2.796 3.814 -16.784 ? ? ? C13 S0Q 21 S0Q B B1 B 0 1 N N N N N N 4.281 4.471 -18.544 ? ? ? B S0Q 22 S0Q C8 C15 C 0 1 Y N N N N N 5.965 1.031 -17.352 ? ? ? C8 S0Q 23 S0Q C C16 C 0 1 N N N N N N 7.200 0.229 -17.584 ? ? ? C S0Q 24 S0Q O O6 O 0 1 N N N N N N 7.624 0.045 -18.726 ? ? ? O S0Q 25 S0Q N N3 N 0 1 N N N N N N 7.792 -0.276 -16.500 ? ? ? N S0Q 26 S0Q C6 C17 C 0 1 N N N N N N 11.835 -1.931 -16.521 ? ? ? C6 S0Q 27 S0Q H1 H1 H 0 1 N N N N N N 8.981 -1.720 -17.436 ? ? ? H1 S0Q 28 S0Q H2 H2 H 0 1 N N N N N N 9.166 -1.606 -15.653 ? ? ? H2 S0Q 29 S0Q H3 H3 H 0 1 N N N N N N 12.231 1.326 -17.126 ? ? ? H3 S0Q 30 S0Q H4 H4 H 0 1 N N N N N N 12.173 0.319 -18.612 ? ? ? H4 S0Q 31 S0Q H5 H5 H 0 1 N N N N N N 12.996 -1.851 -14.695 ? ? ? H5 S0Q 32 S0Q H6 H6 H 0 1 N N N N N N 13.735 -2.833 -16.005 ? ? ? H6 S0Q 33 S0Q H7 H7 H 0 1 N N N N N N 0.692 3.702 -13.696 ? ? ? H7 S0Q 34 S0Q H8 H8 H 0 1 N N N N N N 14.982 -0.979 -14.337 ? ? ? H8 S0Q 35 S0Q H9 H9 H 0 1 N N N N N N 15.968 -0.265 -15.658 ? ? ? H9 S0Q 36 S0Q H10 H10 H 0 1 N N N N N N 14.692 0.715 -14.859 ? ? ? H10 S0Q 37 S0Q H11 H11 H 0 1 N N N N N N 5.111 -0.176 -15.797 ? ? ? H11 S0Q 38 S0Q H12 H12 H 0 1 N N N N N N 3.166 1.301 -15.463 ? ? ? H12 S0Q 39 S0Q H13 H13 H 0 1 N N N N N N 0.808 4.108 -17.535 ? ? ? H13 S0Q 40 S0Q H14 H14 H 0 1 N N N N N N 1.235 2.398 -17.184 ? ? ? H14 S0Q 41 S0Q H15 H15 H 0 1 N N N N N N 6.547 2.410 -18.882 ? ? ? H15 S0Q 42 S0Q H16 H16 H 0 1 N N N N N N 2.980 4.250 -15.791 ? ? ? H16 S0Q 43 S0Q H18 H18 H 0 1 N N N N N N 7.371 -0.128 -15.605 ? ? ? H18 S0Q 44 S0Q H19 H19 H 0 1 N N N N N N 11.077 -2.388 -15.868 ? ? ? H19 S0Q 45 S0Q H20 H20 H 0 1 N N N N N N 11.943 -2.533 -17.435 ? ? ? H20 S0Q 46 S0Q O6 O7 O 0 1 N N N N N N 4.216 4.774 -19.899 ? ? ? O6 S0Q 47 S0Q H17 H17 H 0 1 N N N N N N 3.372 5.162 -20.097 ? ? ? H17 S0Q 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S0Q O C DOUB N N 1 S0Q B C12 SING N N 2 S0Q B O3 SING N N 3 S0Q O1 C4 DOUB N N 4 S0Q C16 C12 DOUB Y N 5 S0Q C16 C8 SING Y N 6 S0Q C12 C11 SING Y N 7 S0Q O3 C13 SING N N 8 S0Q C C8 SING N N 9 S0Q C N SING N N 10 S0Q C3 C4 SING N N 11 S0Q C3 N1 SING N N 12 S0Q C8 C9 DOUB Y N 13 S0Q C4 N2 SING N N 14 S0Q C11 C13 SING N N 15 S0Q C11 C10 DOUB Y N 16 S0Q N1 C2 SING N N 17 S0Q N1 C6 SING N N 18 S0Q C14 C13 SING N N 19 S0Q C14 C15 SING N N 20 S0Q O2 C2 DOUB N N 21 S0Q C2 C1 SING N N 22 S0Q C1 N SING N N 23 S0Q C6 C5 SING N N 24 S0Q C9 C10 SING Y N 25 S0Q N2 C5 SING N N 26 S0Q N2 C7 SING N N 27 S0Q O4 C15 DOUB N N 28 S0Q C15 O5 SING N N 29 S0Q C1 H1 SING N N 30 S0Q C1 H2 SING N N 31 S0Q C3 H3 SING N N 32 S0Q C3 H4 SING N N 33 S0Q C5 H5 SING N N 34 S0Q C5 H6 SING N N 35 S0Q O5 H7 SING N N 36 S0Q C7 H8 SING N N 37 S0Q C7 H9 SING N N 38 S0Q C7 H10 SING N N 39 S0Q C9 H11 SING N N 40 S0Q C10 H12 SING N N 41 S0Q C14 H13 SING N N 42 S0Q C14 H14 SING N N 43 S0Q C16 H15 SING N N 44 S0Q C13 H16 SING N N 45 S0Q N H18 SING N N 46 S0Q C6 H19 SING N N 47 S0Q C6 H20 SING N N 48 S0Q B O6 SING N N 49 S0Q O6 H17 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S0Q InChI InChI 1.03 "InChI=1S/C17H20BN3O7/c1-20-4-5-21(9-15(20)23)14(22)8-19-17(26)10-2-3-11-12(6-10)18(27)28-13(11)7-16(24)25/h2-3,6,13,27H,4-5,7-9H2,1H3,(H,19,26)(H,24,25)/t13-/m0/s1" S0Q InChIKey InChI 1.03 WBGRQHYZWFAHOW-ZDUSSCGKSA-N S0Q SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1=O)C(=O)CNC(=O)c2ccc3[C@H](CC(O)=O)OB(O)c3c2" S0Q SMILES CACTVS 3.385 "CN1CCN(CC1=O)C(=O)CNC(=O)c2ccc3[CH](CC(O)=O)OB(O)c3c2" S0Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B1(c2cc(ccc2[C@@H](O1)CC(=O)O)C(=O)NCC(=O)N3CCN(C(=O)C3)C)O" S0Q SMILES "OpenEye OEToolkits" 2.0.7 "B1(c2cc(ccc2C(O1)CC(=O)O)C(=O)NCC(=O)N3CCN(C(=O)C3)C)O" # _pdbx_chem_comp_identifier.comp_id S0Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(3~{S})-6-[[2-(4-methyl-3-oxidanylidene-piperazin-1-yl)-2-oxidanylidene-ethyl]carbamoyl]-1-oxidanyl-3~{H}-2,1-benzoxaborol-3-yl]ethanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S0Q _pdbx_chem_comp_synonyms.name "2-[(3S)-6-[[2-(4-methyl-3-oxidanylidene-piperazin-1-yl)-2-oxidanylidene-ethyl]carbamoyl]-1-oxidanyl-3H-2,1-benzoxaborol-3-yl]ethanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S0Q "Create component" 2020-11-04 PDBE S0Q "Initial release" 2021-08-11 RCSB S0Q "Modify name" 2022-03-16 RCSB S0Q "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id S0Q _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #