data_S1E # _chem_comp.id S1E _chem_comp.name "N,N-dibenzyl-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborole-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H20 B N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-oxidanyl-N,N-bis(phenylmethyl)-3H-2,1-benzoxaborole-6-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.210 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S1E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AU9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S1E O O1 O 0 1 N N N N N N -7.706 41.257 -18.671 0.189 -0.942 -2.220 O S1E 1 S1E C C1 C 0 1 N N N N N N -7.355 41.071 -17.516 0.166 -0.262 -1.213 C S1E 2 S1E N N1 N 0 1 N N N N N N -8.061 41.553 -16.453 -1.006 -0.008 -0.598 N S1E 3 S1E C15 C2 C 0 1 N N N N N N -9.163 42.505 -16.666 -1.054 0.923 0.532 C15 S1E 4 S1E C16 C3 C 0 1 Y N N N N N -10.538 41.910 -16.866 -2.232 1.849 0.370 C16 S1E 5 S1E C21 C4 C 0 1 Y N N N N N -10.721 40.785 -17.656 -2.124 2.972 -0.431 C21 S1E 6 S1E C20 C5 C 0 1 Y N N N N N -11.986 40.430 -18.107 -3.204 3.822 -0.579 C20 S1E 7 S1E C19 C6 C 0 1 Y N N N N N -13.093 41.169 -17.733 -4.392 3.549 0.072 C19 S1E 8 S1E C18 C7 C 0 1 Y N N N N N -12.935 42.246 -16.888 -4.501 2.427 0.872 C18 S1E 9 S1E C17 C8 C 0 1 Y N N N N N -11.666 42.611 -16.452 -3.422 1.574 1.016 C17 S1E 10 S1E C8 C9 C 0 1 N N N N N N -7.885 41.148 -15.050 -2.233 -0.664 -1.059 C8 S1E 11 S1E C9 C10 C 0 1 Y N N N N N -7.450 42.248 -14.105 -2.415 -1.964 -0.320 C9 S1E 12 S1E C14 C11 C 0 1 Y N N N N N -6.327 43.030 -14.374 -1.870 -3.130 -0.827 C14 S1E 13 S1E C13 C12 C 0 1 Y N N N N N -5.797 43.872 -13.406 -2.038 -4.323 -0.149 C13 S1E 14 S1E C12 C13 C 0 1 Y N N N N N -6.404 43.980 -12.178 -2.750 -4.351 1.035 C12 S1E 15 S1E C11 C14 C 0 1 Y N N N N N -7.559 43.258 -11.918 -3.294 -3.185 1.542 C11 S1E 16 S1E C10 C15 C 0 1 Y N N N N N -8.078 42.400 -12.875 -3.123 -1.992 0.867 C10 S1E 17 S1E C1 C16 C 0 1 Y N N N N N -6.174 40.181 -17.281 1.424 0.282 -0.660 C1 S1E 18 S1E C4 C17 C 0 1 Y N N N N N -5.172 40.489 -16.355 1.499 1.624 -0.276 C4 S1E 19 S1E C5 C18 C 0 1 Y N N N N N -4.079 39.657 -16.197 2.673 2.134 0.242 C5 S1E 20 S1E C6 C19 C 0 1 Y N N N N N -3.963 38.519 -16.978 3.782 1.323 0.384 C6 S1E 21 S1E C7 C20 C 0 1 N N N N N N -2.865 37.498 -16.913 5.170 1.588 0.904 C7 S1E 22 S1E O1 O2 O 0 1 N N N N N N -3.300 36.432 -17.691 5.939 0.389 0.831 O1 S1E 23 S1E B B1 B 0 1 N N N N N N -4.582 36.703 -18.428 5.127 -0.644 0.292 B S1E 24 S1E C3 C21 C 0 1 Y N N N N N -4.935 38.192 -17.941 3.716 -0.018 0.003 C3 S1E 25 S1E C2 C22 C 0 1 Y N N N N N -6.038 39.037 -18.063 2.539 -0.542 -0.513 C2 S1E 26 S1E H1 H1 H 0 1 N N N N N N -8.923 43.100 -17.560 -1.158 0.363 1.461 H1 S1E 27 S1E H2 H2 H 0 1 N N N N N N -9.209 43.165 -15.787 -0.134 1.507 0.561 H2 S1E 28 S1E H3 H3 H 0 1 N N N N N N -9.869 40.177 -17.924 -1.195 3.184 -0.939 H3 S1E 29 S1E H4 H4 H 0 1 N N N N N N -12.105 39.573 -18.753 -3.119 4.699 -1.203 H4 S1E 30 S1E H5 H5 H 0 1 N N N N N N -14.074 40.904 -18.100 -5.235 4.214 -0.043 H5 S1E 31 S1E H6 H6 H 0 1 N N N N N N -13.799 42.808 -16.564 -5.429 2.214 1.381 H6 S1E 32 S1E H7 H7 H 0 1 N N N N N N -11.555 43.451 -15.782 -3.508 0.695 1.638 H7 S1E 33 S1E H8 H8 H 0 1 N N N N N N -8.845 40.751 -14.689 -3.086 -0.014 -0.867 H8 S1E 34 S1E H9 H9 H 0 1 N N N N N N -7.124 40.354 -15.019 -2.159 -0.861 -2.129 H9 S1E 35 S1E H10 H10 H 0 1 N N N N N N -5.864 42.980 -15.348 -1.314 -3.108 -1.753 H10 S1E 36 S1E H11 H11 H 0 1 N N N N N N -4.906 44.443 -13.619 -1.613 -5.233 -0.546 H11 S1E 37 S1E H12 H12 H 0 1 N N N N N N -5.984 44.624 -11.419 -2.881 -5.283 1.564 H12 S1E 38 S1E H13 H13 H 0 1 N N N N N N -8.057 43.365 -10.965 -3.850 -3.207 2.468 H13 S1E 39 S1E H14 H14 H 0 1 N N N N N N -8.979 41.844 -12.662 -3.544 -1.081 1.265 H14 S1E 40 S1E H15 H15 H 0 1 N N N N N N -5.253 41.385 -15.758 0.636 2.264 -0.385 H15 S1E 41 S1E H16 H16 H 0 1 N N N N N N -3.319 39.894 -15.467 2.724 3.172 0.536 H16 S1E 42 S1E H17 H17 H 0 1 N N N N N N -2.703 37.174 -15.874 5.644 2.362 0.299 H17 S1E 43 S1E O2 O3 O 0 1 N N N N N N -5.138 36.046 -19.126 5.518 -1.989 0.058 O2 S1E 44 S1E H19 H19 H 0 1 N N N N N N -6.807 38.798 -18.783 2.487 -1.581 -0.802 H19 S1E 45 S1E H20 H20 H 0 1 N N N N N N -4.678 35.220 -19.218 6.434 -2.181 0.302 H20 S1E 46 S1E H18 H18 H 0 1 N N N N N N -1.930 37.913 -17.318 5.113 1.921 1.940 H18 S1E 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S1E O C DOUB N N 1 S1E B C3 SING N N 2 S1E B O1 SING N N 3 S1E C20 C19 DOUB Y N 4 S1E C20 C21 SING Y N 5 S1E C2 C3 SING Y N 6 S1E C2 C1 DOUB Y N 7 S1E C3 C6 DOUB Y N 8 S1E C19 C18 SING Y N 9 S1E O1 C7 SING N N 10 S1E C21 C16 DOUB Y N 11 S1E C C1 SING N N 12 S1E C N SING N N 13 S1E C1 C4 SING Y N 14 S1E C6 C7 SING N N 15 S1E C6 C5 SING Y N 16 S1E C18 C17 DOUB Y N 17 S1E C16 C15 SING N N 18 S1E C16 C17 SING Y N 19 S1E C15 N SING N N 20 S1E N C8 SING N N 21 S1E C4 C5 DOUB Y N 22 S1E C8 C9 SING N N 23 S1E C14 C9 DOUB Y N 24 S1E C14 C13 SING Y N 25 S1E C9 C10 SING Y N 26 S1E C13 C12 DOUB Y N 27 S1E C10 C11 DOUB Y N 28 S1E C12 C11 SING Y N 29 S1E C15 H1 SING N N 30 S1E C15 H2 SING N N 31 S1E C21 H3 SING N N 32 S1E C20 H4 SING N N 33 S1E C19 H5 SING N N 34 S1E C18 H6 SING N N 35 S1E C17 H7 SING N N 36 S1E C8 H8 SING N N 37 S1E C8 H9 SING N N 38 S1E C14 H10 SING N N 39 S1E C13 H11 SING N N 40 S1E C12 H12 SING N N 41 S1E C11 H13 SING N N 42 S1E C10 H14 SING N N 43 S1E C4 H15 SING N N 44 S1E C5 H16 SING N N 45 S1E C7 H17 SING N N 46 S1E B O2 SING N N 47 S1E C2 H19 SING N N 48 S1E O2 H20 SING N N 49 S1E C7 H18 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S1E InChI InChI 1.03 "InChI=1S/C22H20BNO3/c25-22(19-11-12-20-16-27-23(26)21(20)13-19)24(14-17-7-3-1-4-8-17)15-18-9-5-2-6-10-18/h1-13,26H,14-16H2" S1E InChIKey InChI 1.03 KHPGSFWNOIQUOW-UHFFFAOYSA-N S1E SMILES_CANONICAL CACTVS 3.385 "OB1OCc2ccc(cc12)C(=O)N(Cc3ccccc3)Cc4ccccc4" S1E SMILES CACTVS 3.385 "OB1OCc2ccc(cc12)C(=O)N(Cc3ccccc3)Cc4ccccc4" S1E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B1(c2cc(ccc2CO1)C(=O)N(Cc3ccccc3)Cc4ccccc4)O" S1E SMILES "OpenEye OEToolkits" 2.0.7 "B1(c2cc(ccc2CO1)C(=O)N(Cc3ccccc3)Cc4ccccc4)O" # _pdbx_chem_comp_identifier.comp_id S1E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-oxidanyl-~{N},~{N}-bis(phenylmethyl)-3~{H}-2,1-benzoxaborole-6-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S1E _pdbx_chem_comp_synonyms.name "1-oxidanyl-N,N-bis(phenylmethyl)-3H-2,1-benzoxaborole-6-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S1E "Create component" 2020-11-05 PDBE S1E "Initial release" 2021-08-11 RCSB S1E "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id S1E _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #