data_S5I # _chem_comp.id S5I _chem_comp.name Cerdulatinib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 N7 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-(cyclopropylamino)-2-[[4-(4-ethylsulfonylpiperazin-1-yl)phenyl]amino]pyrimidine-5-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-13 _chem_comp.pdbx_modified_date 2023-12-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.538 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S5I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BX6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S5I C4 C1 C 0 1 Y N N N N N -13.389 13.084 20.006 -5.485 -0.071 -0.157 C4 S5I 1 S5I C5 C2 C 0 1 Y N N N N N -13.810 11.843 19.629 -5.109 -1.393 0.168 C5 S5I 2 S5I C6 C3 C 0 1 Y N N N N N -12.900 10.920 19.160 -3.770 -1.637 0.493 C6 S5I 3 S5I N1 N1 N 0 1 Y N N N N N -11.590 11.248 19.126 -2.914 -0.633 0.484 N1 S5I 4 S5I N3 N2 N 0 1 Y N N N N N -12.113 13.407 19.964 -4.558 0.879 -0.146 N3 S5I 5 S5I C2 C4 C 0 1 Y N N N N N -11.233 12.506 19.496 -3.303 0.598 0.173 C2 S5I 6 S5I CAA C5 C 0 1 N N N N N N -2.405 20.353 18.809 7.745 -0.536 -2.966 CAA S5I 7 S5I CAB C6 C 0 1 N N N N N N -3.466 21.387 19.264 6.543 -0.283 -2.054 CAB S5I 8 S5I CAG C7 C 0 1 N N N N N N -5.433 18.996 19.525 4.787 -1.215 0.934 CAG S5I 9 S5I CAH C8 C 0 1 N N N N N N -5.705 17.486 19.619 3.359 -0.854 0.510 CAH S5I 10 S5I CAJ C9 C 0 1 N N N N N N -6.942 18.147 21.770 3.870 1.516 0.526 CAJ S5I 11 S5I CAK C10 C 0 1 N N N N N N -5.628 18.922 22.055 5.319 1.252 0.950 CAK S5I 12 S5I CAL C11 C 0 1 Y N N N N N -7.555 16.074 20.379 1.655 0.751 0.839 CAL S5I 13 S5I CAM C12 C 0 1 Y N N N N N -6.958 14.970 19.930 0.850 -0.161 0.170 CAM S5I 14 S5I CAN C13 C 0 1 Y N N N N N -7.818 13.770 19.633 -0.483 0.125 -0.049 CAN S5I 15 S5I CAO C14 C 0 1 Y N N N N N -9.113 13.910 19.749 -1.018 1.325 0.401 CAO S5I 16 S5I CAP C15 C 0 1 Y N N N N N -9.812 15.163 20.229 -0.213 2.238 1.069 CAP S5I 17 S5I CAQ C16 C 0 1 Y N N N N N -9.050 16.218 20.507 1.120 1.952 1.288 CAQ S5I 18 S5I CAZ C17 C 0 1 N N N N N N -13.632 15.355 20.976 -7.191 1.617 -0.709 CAZ S5I 19 S5I CBA C18 C 0 1 N N N N N N -13.654 16.436 19.918 -8.094 1.909 -1.909 CBA S5I 20 S5I CBB C19 C 0 1 N N N N N N -14.517 16.574 21.202 -8.663 1.973 -0.491 CBB S5I 21 S5I CBC C20 C 0 1 N N N N N N -15.310 11.482 19.675 -6.098 -2.483 0.165 CBC S5I 22 S5I NAF N3 N 0 1 N N N N N N -5.137 19.571 20.834 5.682 -0.115 0.547 NAF S5I 23 S5I NAI N4 N 0 1 N N N N N N -6.733 17.240 20.628 3.005 0.459 1.065 NAI S5I 24 S5I NAR N5 N 0 1 N N N N N N -9.826 12.726 19.426 -2.371 1.615 0.179 NAR S5I 25 S5I NAY N6 N 0 1 N N N N N N -14.273 14.124 20.505 -6.791 0.226 -0.486 NAY S5I 26 S5I NBE N7 N 0 1 N N N N N N -15.651 10.123 19.466 -5.746 -3.713 0.590 NBE S5I 27 S5I OAD O1 O 0 1 N N N N N N -3.020 20.744 21.888 7.403 -1.747 0.004 OAD S5I 28 S5I OAE O2 O 0 1 N N N N N N -4.825 22.080 21.559 7.924 0.671 0.019 OAE S5I 29 S5I OBD O3 O 0 1 N N N N N N -16.183 12.312 19.867 -7.233 -2.274 -0.220 OBD S5I 30 S5I SAC S1 S 0 1 N N N N N N -4.111 20.965 20.926 7.063 -0.406 -0.321 SAC S5I 31 S5I H6 H1 H 0 1 N N N N N N -13.230 9.948 18.824 -3.442 -2.634 0.748 H6 S5I 32 S5I HAC H2 H 0 1 N N N N N N -2.032 20.625 17.811 7.432 -0.462 -4.008 HAC S5I 33 S5I HAA H3 H 0 1 N N N N N N -1.569 20.347 19.524 8.517 0.207 -2.765 HAA S5I 34 S5I HAB H4 H 0 1 N N N N N N -2.861 19.353 18.770 8.142 -1.533 -2.776 HAB S5I 35 S5I HAD H5 H 0 1 N N N N N N -3.006 22.385 19.298 6.146 0.714 -2.244 HAD S5I 36 S5I HAE H6 H 0 1 N N N N N N -4.298 21.391 18.544 5.771 -1.026 -2.256 HAE S5I 37 S5I HAH H7 H 0 1 N N N N N N -4.574 19.163 18.859 4.824 -1.355 2.014 HAH S5I 38 S5I HAG H8 H 0 1 N N N N N N -6.321 19.494 19.109 5.097 -2.133 0.433 HAG S5I 39 S5I HAI H9 H 0 1 N N N N N N -6.052 17.114 18.644 3.301 -0.817 -0.578 HAI S5I 40 S5I HAJ H10 H 0 1 N N N N N N -4.780 16.963 19.903 2.667 -1.607 0.886 HAJ S5I 41 S5I HAK H11 H 0 1 N N N N N N -7.745 18.860 21.531 3.548 2.483 0.914 HAK S5I 42 S5I HAL H12 H 0 1 N N N N N N -7.224 17.562 22.658 3.805 1.521 -0.562 HAL S5I 43 S5I HAN H13 H 0 1 N N N N N N -4.866 18.219 22.422 5.980 1.967 0.460 HAN S5I 44 S5I HAM H14 H 0 1 N N N N N N -5.819 19.689 22.820 5.408 1.354 2.032 HAM S5I 45 S5I HAO H15 H 0 1 N N N N N N -5.888 14.937 19.783 1.266 -1.094 -0.180 HAO S5I 46 S5I HAP H16 H 0 1 N N N N N N -7.381 12.828 19.335 -1.110 -0.585 -0.569 HAP S5I 47 S5I HAQ H17 H 0 1 N N N N N N -10.886 15.200 20.341 -0.629 3.171 1.418 HAQ S5I 48 S5I HAR H18 H 0 1 N N N N N N -9.492 17.154 20.817 1.745 2.659 1.812 HAR S5I 49 S5I HAZ H19 H 0 1 N N N N N N -12.726 15.269 21.594 -6.448 2.369 -0.444 HAZ S5I 50 S5I HBA H20 H 0 1 N N N N N N -12.776 17.082 19.772 -7.944 2.853 -2.434 HBA S5I 51 S5I H6L H21 H 0 1 N N N N N N -14.136 16.248 18.947 -8.390 1.066 -2.533 H6L S5I 52 S5I HBB H22 H 0 1 N N N N N N -14.251 17.316 21.970 -9.334 1.171 -0.181 HBB S5I 53 S5I H6M H23 H 0 1 N N N N N N -15.612 16.481 21.145 -8.888 2.958 -0.082 H6M S5I 54 S5I H6N H24 H 0 1 N N N N N N -9.275 11.953 19.111 -2.652 2.532 0.029 H6N S5I 55 S5I HAY H25 H 0 1 N N N N N N -14.899 14.371 19.766 -7.444 -0.486 -0.569 HAY S5I 56 S5I HBE H26 H 0 1 N N N N N N -16.610 9.841 19.476 -4.841 -3.879 0.897 HBE S5I 57 S5I H6O H27 H 0 1 N N N N N N -14.932 9.446 19.309 -6.398 -4.431 0.588 H6O S5I 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S5I CAA CAB SING N N 1 S5I N1 C6 DOUB Y N 2 S5I N1 C2 SING Y N 3 S5I C6 C5 SING Y N 4 S5I CAB SAC SING N N 5 S5I NAR C2 SING N N 6 S5I NAR CAO SING N N 7 S5I NBE CBC SING N N 8 S5I C2 N3 DOUB Y N 9 S5I CAG CAH SING N N 10 S5I CAG NAF SING N N 11 S5I CAH NAI SING N N 12 S5I C5 CBC SING N N 13 S5I C5 C4 DOUB Y N 14 S5I CAN CAO DOUB Y N 15 S5I CAN CAM SING Y N 16 S5I CBC OBD DOUB N N 17 S5I CAO CAP SING Y N 18 S5I CBA CAZ SING N N 19 S5I CBA CBB SING N N 20 S5I CAM CAL DOUB Y N 21 S5I N3 C4 SING Y N 22 S5I C4 NAY SING N N 23 S5I CAP CAQ DOUB Y N 24 S5I CAL CAQ SING Y N 25 S5I CAL NAI SING N N 26 S5I NAY CAZ SING N N 27 S5I NAI CAJ SING N N 28 S5I NAF SAC SING N N 29 S5I NAF CAK SING N N 30 S5I SAC OAE DOUB N N 31 S5I SAC OAD DOUB N N 32 S5I CAZ CBB SING N N 33 S5I CAJ CAK SING N N 34 S5I C6 H6 SING N N 35 S5I CAA HAC SING N N 36 S5I CAA HAA SING N N 37 S5I CAA HAB SING N N 38 S5I CAB HAD SING N N 39 S5I CAB HAE SING N N 40 S5I CAG HAH SING N N 41 S5I CAG HAG SING N N 42 S5I CAH HAI SING N N 43 S5I CAH HAJ SING N N 44 S5I CAJ HAK SING N N 45 S5I CAJ HAL SING N N 46 S5I CAK HAN SING N N 47 S5I CAK HAM SING N N 48 S5I CAM HAO SING N N 49 S5I CAN HAP SING N N 50 S5I CAP HAQ SING N N 51 S5I CAQ HAR SING N N 52 S5I CAZ HAZ SING N N 53 S5I CBA HBA SING N N 54 S5I CBA H6L SING N N 55 S5I CBB HBB SING N N 56 S5I CBB H6M SING N N 57 S5I NAR H6N SING N N 58 S5I NAY HAY SING N N 59 S5I NBE HBE SING N N 60 S5I NBE H6O SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S5I InChI InChI 1.06 "InChI=1S/C20H27N7O3S/c1-2-31(29,30)27-11-9-26(10-12-27)16-7-5-15(6-8-16)24-20-22-13-17(18(21)28)19(25-20)23-14-3-4-14/h5-8,13-14H,2-4,9-12H2,1H3,(H2,21,28)(H2,22,23,24,25)" S5I InChIKey InChI 1.06 BGLPECHZZQDNCD-UHFFFAOYSA-N S5I SMILES_CANONICAL CACTVS 3.385 "CC[S](=O)(=O)N1CCN(CC1)c2ccc(Nc3ncc(C(N)=O)c(NC4CC4)n3)cc2" S5I SMILES CACTVS 3.385 "CC[S](=O)(=O)N1CCN(CC1)c2ccc(Nc3ncc(C(N)=O)c(NC4CC4)n3)cc2" S5I SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCS(=O)(=O)N1CCN(CC1)c2ccc(cc2)Nc3ncc(c(n3)NC4CC4)C(=O)N" S5I SMILES "OpenEye OEToolkits" 3.1.0.0 "CCS(=O)(=O)N1CCN(CC1)c2ccc(cc2)Nc3ncc(c(n3)NC4CC4)C(=O)N" # _pdbx_chem_comp_identifier.comp_id S5I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "4-(cyclopropylamino)-2-[[4-(4-ethylsulfonylpiperazin-1-yl)phenyl]amino]pyrimidine-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S5I "Create component" 2022-12-13 PDBE S5I "Initial release" 2023-12-20 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S5I _pdbx_chem_comp_synonyms.name "4-(cyclopropylamino)-2-[[4-(4-ethylsulfonylpiperazin-1-yl)phenyl]amino]pyrimidine-5-carboxamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #