data_S5K # _chem_comp.id S5K _chem_comp.name "[(1R)-2-(1-benzofuran-3-yl)-1-{[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]formamido}ethyl]boronic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H20 B N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(1~{R})-2-(1-benzofuran-3-yl)-1-[[(1~{S},2~{R},4~{R})-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid; [(1R)-2-(1-benzofuran-3-yl)-1-{[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]formamido}ethyl]boronic acid; ((R)-2-(benzofuran-3-yl)-1-((1S,2R,4R)-7-oxabicyclo[2.2.1]heptane-2-carboxamido)ethyl)boronic acid; [(1R)-2-(1-benzofuran-3-yl)-1-[[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-08 _chem_comp.pdbx_modified_date 2021-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 329.155 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S5K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AWE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S5K C1 C1 C 0 1 N N R -37.340 -23.635 -10.001 1.926 -0.693 0.037 C1 S5K 1 S5K C2 C2 C 0 1 N N S -36.418 -22.553 -10.627 2.870 -1.212 -1.089 C2 S5K 2 S5K C7 C3 C 0 1 N N N -36.514 -21.273 -9.791 3.513 -2.512 -0.520 C7 S5K 3 S5K C8 C4 C 0 1 N N N -37.949 -20.762 -10.123 4.507 -1.969 0.538 C8 S5K 4 S5K C9 C5 C 0 1 Y N N -36.076 -27.426 -12.748 -2.676 0.614 -0.175 C9 S5K 5 S5K C10 C6 C 0 1 N N N -35.032 -27.387 -11.674 -2.110 1.893 0.386 C10 S5K 6 S5K C11 C7 C 0 1 N N R -35.678 -27.067 -10.324 -0.689 2.097 -0.144 C11 S5K 7 S5K C16 C8 C 0 1 Y N N -37.402 -27.529 -12.582 -3.422 0.481 -1.280 C16 S5K 8 S5K O17 O1 O 0 1 Y N N -38.107 -27.291 -13.735 -3.745 -0.810 -1.468 O17 S5K 9 S5K C19 C9 C 0 1 Y N N -37.158 -27.047 -14.694 -3.225 -1.583 -0.494 C19 S5K 10 S5K C20 C10 C 0 1 Y N N -37.395 -26.774 -16.025 -3.261 -2.947 -0.236 C20 S5K 11 S5K C21 C11 C 0 1 Y N N -36.294 -26.647 -16.854 -2.606 -3.457 0.865 C21 S5K 12 S5K C22 C12 C 0 1 Y N N -35.006 -26.760 -16.341 -1.906 -2.621 1.723 C22 S5K 13 S5K O3 O2 O 0 1 N N N -37.170 -22.170 -11.797 3.987 -0.270 -0.981 O3 S5K 14 S5K C4 C13 C 0 1 N N N -37.195 -25.124 -10.295 1.035 0.408 -0.478 C4 S5K 15 S5K C5 C14 C 0 1 N N N -38.751 -23.129 -10.412 2.920 -0.150 1.095 C5 S5K 16 S5K C6 C15 C 0 1 N N R -38.405 -21.829 -11.139 4.307 -0.427 0.440 C6 S5K 17 S5K N12 N1 N 0 1 N N N -35.953 -25.631 -10.237 0.177 1.027 0.357 N12 S5K 18 S5K B13 B1 B 0 1 N N N -34.905 -27.763 -9.001 -0.142 3.485 0.345 B13 S5K 19 S5K O15 O3 O 0 1 N N N -33.411 -27.392 -8.620 1.255 3.681 0.508 O15 S5K 20 S5K C18 C16 C 0 1 Y N N -35.891 -27.142 -14.149 -2.516 -0.737 0.375 C18 S5K 21 S5K C23 C17 C 0 1 Y N N -34.793 -26.998 -14.987 -1.858 -1.265 1.485 C23 S5K 22 S5K O24 O4 O 0 1 N N N -38.183 -25.832 -10.466 1.089 0.736 -1.644 O24 S5K 23 S5K O25 O5 O 0 1 N N N -35.753 -27.442 -7.769 -1.045 4.546 0.624 O25 S5K 24 S5K H1 H1 H 0 1 N N N -37.269 -23.516 -8.910 1.331 -1.508 0.449 H1 S5K 25 S5K H2 H2 H 0 1 N N N -35.389 -22.897 -10.810 2.413 -1.308 -2.073 H2 S5K 26 S5K H3 H3 H 0 1 N N N -36.407 -21.490 -8.718 2.758 -3.144 -0.052 H3 S5K 27 S5K H4 H4 H 0 1 N N N -35.751 -20.541 -10.095 4.039 -3.058 -1.304 H4 S5K 28 S5K H5 H5 H 0 1 N N N -37.928 -19.758 -10.572 4.247 -2.330 1.533 H5 S5K 29 S5K H6 H6 H 0 1 N N N -38.592 -20.751 -9.231 5.531 -2.245 0.284 H6 S5K 30 S5K H7 H7 H 0 1 N N N -34.533 -28.366 -11.616 -2.735 2.732 0.080 H7 S5K 31 S5K H8 H8 H 0 1 N N N -34.290 -26.611 -11.915 -2.087 1.834 1.474 H8 S5K 32 S5K H9 H9 H 0 1 N N N -36.660 -27.563 -10.347 -0.701 2.075 -1.234 H9 S5K 33 S5K H10 H10 H 0 1 N N N -37.867 -27.774 -11.639 -3.721 1.294 -1.926 H10 S5K 34 S5K H11 H11 H 0 1 N N N -38.400 -26.664 -16.405 -3.803 -3.608 -0.896 H11 S5K 35 S5K H12 H12 H 0 1 N N N -36.436 -26.459 -17.908 -2.637 -4.519 1.061 H12 S5K 36 S5K H13 H13 H 0 1 N N N -34.159 -26.662 -17.004 -1.398 -3.035 2.582 H13 S5K 37 S5K H14 H14 H 0 1 N N N -39.384 -22.942 -9.532 2.773 0.919 1.250 H14 S5K 38 S5K H15 H15 H 0 1 N N N -39.255 -23.842 -11.081 2.819 -0.692 2.035 H15 S5K 39 S5K H16 H16 H 0 1 N N N -39.204 -21.477 -11.807 5.129 0.185 0.810 H16 S5K 40 S5K H17 H17 H 0 1 N N N -35.183 -25.002 -10.130 0.134 0.765 1.290 H17 S5K 41 S5K H18 H18 H 0 1 N N N -33.149 -27.882 -7.849 1.788 2.903 0.295 H18 S5K 42 S5K H19 H19 H 0 1 N N N -33.790 -27.070 -14.594 -1.313 -0.615 2.154 H19 S5K 43 S5K H20 H20 H 0 1 N N N -35.347 -27.820 -6.998 -1.966 4.345 0.407 H20 S5K 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S5K C21 C22 DOUB Y N 1 S5K C21 C20 SING Y N 2 S5K C22 C23 SING Y N 3 S5K C20 C19 DOUB Y N 4 S5K C23 C18 DOUB Y N 5 S5K C19 C18 SING Y N 6 S5K C19 O17 SING Y N 7 S5K C18 C9 SING Y N 8 S5K O17 C16 SING Y N 9 S5K C9 C16 DOUB Y N 10 S5K C9 C10 SING N N 11 S5K O3 C6 SING N N 12 S5K O3 C2 SING N N 13 S5K C10 C11 SING N N 14 S5K C6 C5 SING N N 15 S5K C6 C8 SING N N 16 S5K C2 C1 SING N N 17 S5K C2 C7 SING N N 18 S5K O24 C4 DOUB N N 19 S5K C5 C1 SING N N 20 S5K C11 N12 SING N N 21 S5K C11 B13 SING N N 22 S5K C4 N12 SING N N 23 S5K C4 C1 SING N N 24 S5K C8 C7 SING N N 25 S5K B13 O15 SING N N 26 S5K B13 O25 SING N N 27 S5K C1 H1 SING N N 28 S5K C2 H2 SING N N 29 S5K C7 H3 SING N N 30 S5K C7 H4 SING N N 31 S5K C8 H5 SING N N 32 S5K C8 H6 SING N N 33 S5K C10 H7 SING N N 34 S5K C10 H8 SING N N 35 S5K C11 H9 SING N N 36 S5K C16 H10 SING N N 37 S5K C20 H11 SING N N 38 S5K C21 H12 SING N N 39 S5K C22 H13 SING N N 40 S5K C5 H14 SING N N 41 S5K C5 H15 SING N N 42 S5K C6 H16 SING N N 43 S5K N12 H17 SING N N 44 S5K O15 H18 SING N N 45 S5K C23 H19 SING N N 46 S5K O25 H20 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S5K InChI InChI 1.03 "InChI=1S/C17H20BNO5/c20-17(13-8-11-5-6-15(13)24-11)19-16(18(21)22)7-10-9-23-14-4-2-1-3-12(10)14/h1-4,9,11,13,15-16,21-22H,5-8H2,(H,19,20)/t11-,13-,15+,16+/m1/s1" S5K InChIKey InChI 1.03 RFQDLTYXNINJON-OYNZBZHQSA-N S5K SMILES_CANONICAL CACTVS 3.385 "OB(O)[C@H](Cc1coc2ccccc12)NC(=O)[C@@H]3C[C@H]4CC[C@@H]3O4" S5K SMILES CACTVS 3.385 "OB(O)[CH](Cc1coc2ccccc12)NC(=O)[CH]3C[CH]4CC[CH]3O4" S5K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B([C@H](Cc1coc2c1cccc2)NC(=O)[C@@H]3C[C@H]4CC[C@@H]3O4)(O)O" S5K SMILES "OpenEye OEToolkits" 2.0.7 "B(C(Cc1coc2c1cccc2)NC(=O)C3CC4CCC3O4)(O)O" # _pdbx_chem_comp_identifier.comp_id S5K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R})-2-(1-benzofuran-3-yl)-1-[[(1~{S},2~{R},4~{R})-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 S5K "[(1~{R})-2-(1-benzofuran-3-yl)-1-[[(1~{S},2~{R},4~{R})-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid" PDB ? 2 S5K "[(1R)-2-(1-benzofuran-3-yl)-1-[[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid" PDB ? 3 S5K "((R)-2-(benzofuran-3-yl)-1-((1S,2R,4R)-7-oxabicyclo[2.2.1]heptane-2-carboxamido)ethyl)boronic acid" AUTHOR ? 4 S5K "[(1R)-2-(1-benzofuran-3-yl)-1-{[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]formamido}ethyl]boronic acid" ? ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S5K "Create component" 2020-11-08 PDBE S5K "Modify synonyms" 2021-03-08 PDBE S5K "Initial release" 2021-06-09 RCSB ##