data_S5M # _chem_comp.id S5M _chem_comp.name "4-~{tert}-butyl-~{N}-[[4-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H24 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-04 _chem_comp.pdbx_modified_date 2020-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S5M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6W06 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S5M N1 N1 N 0 1 Y N N 0.452 18.068 4.866 -7.248 0.942 0.920 N1 S5M 1 S5M N3 N2 N 0 1 N N N 6.540 23.483 9.224 1.361 -1.668 -0.273 N3 S5M 2 S5M C4 C1 C 0 1 Y N N 0.636 20.284 5.868 -5.196 0.974 -0.238 C4 S5M 3 S5M C5 C2 C 0 1 Y N N 2.023 20.099 5.997 -4.821 -0.192 0.451 C5 S5M 4 S5M C6 C3 C 0 1 Y N N 2.937 21.108 6.575 -3.504 -0.825 0.211 C6 S5M 5 S5M C7 C4 C 0 1 Y N N 4.052 20.719 7.309 -2.822 -1.441 1.261 C7 S5M 6 S5M C8 C5 C 0 1 Y N N 4.895 21.666 7.858 -1.595 -2.029 1.031 C8 S5M 7 S5M C10 C6 C 0 1 N N N 5.592 24.052 8.270 0.298 -2.655 -0.480 C10 S5M 8 S5M C13 C7 C 0 1 Y N N 10.053 22.562 9.639 5.060 -1.389 -0.396 C13 S5M 9 S5M C15 C8 C 0 1 Y N N 10.553 22.030 11.948 5.731 0.840 0.164 C15 S5M 10 S5M C17 C9 C 0 1 N N N 10.997 20.693 14.043 6.635 3.021 -0.596 C17 S5M 11 S5M C20 C10 C 0 1 Y N N 9.193 22.155 12.218 4.408 1.207 0.333 C20 S5M 12 S5M C21 C11 C 0 1 Y N N 8.277 22.466 11.229 3.403 0.282 0.139 C21 S5M 13 S5M C22 C12 C 0 1 Y N N 3.559 23.408 6.940 -1.716 -1.405 -1.283 C22 S5M 14 S5M C24 C13 C 0 1 Y N N 1.770 18.010 5.053 -6.854 -0.150 1.541 C24 S5M 15 S5M C1 C14 C 0 1 Y N N -0.089 19.222 5.284 -6.461 1.537 0.028 C1 S5M 16 S5M C11 C15 C 0 1 N N N 7.735 23.036 8.837 2.651 -2.022 -0.436 C11 S5M 17 S5M C12 C16 C 0 1 Y N N 8.702 22.676 9.927 3.723 -1.026 -0.227 C12 S5M 18 S5M C14 C17 C 0 1 Y N N 10.961 22.252 10.637 6.056 -0.455 -0.199 C14 S5M 19 S5M C16 C18 C 0 1 N N N 11.565 21.710 13.051 6.824 1.856 0.377 C16 S5M 20 S5M C18 C19 C 0 1 N N N 11.916 22.987 13.820 6.763 2.377 1.815 C18 S5M 21 S5M C19 C20 C 0 1 N N N 12.857 21.146 12.455 8.184 1.201 0.130 C19 S5M 22 S5M C2 C21 C 0 1 Y N N -1.534 20.838 5.770 -5.446 2.814 -1.513 C2 S5M 23 S5M C23 C22 C 0 1 Y N N 2.714 22.467 6.380 -2.943 -0.813 -1.066 C23 S5M 24 S5M C3 C23 C 0 1 Y N N -0.318 21.306 6.172 -4.572 1.830 -1.242 C3 S5M 25 S5M C9 C24 C 0 1 Y N N 4.662 23.020 7.684 -1.041 -2.010 -0.236 C9 S5M 26 S5M N2 N3 N 0 1 Y N N -1.405 19.576 5.233 -6.580 2.649 -0.761 N2 S5M 27 S5M N4 N4 N 0 1 Y N N 2.581 18.947 5.571 -5.680 -0.712 1.325 N4 S5M 28 S5M O1 O1 O 0 1 N N N 8.057 22.957 7.653 2.933 -3.161 -0.756 O1 S5M 29 S5M H1 H1 H 0 1 N N N 6.287 23.427 10.190 1.136 -0.760 -0.018 H1 S5M 30 S5M H2 H2 H 0 1 N N N 4.261 19.669 7.451 -3.253 -1.456 2.251 H2 S5M 31 S5M H3 H3 H 0 1 N N N 5.751 21.345 8.433 -1.066 -2.506 1.843 H3 S5M 32 S5M H4 H4 H 0 1 N N N 6.157 24.522 7.451 0.342 -3.026 -1.504 H4 S5M 33 S5M H5 H5 H 0 1 N N N 4.990 24.815 8.785 0.433 -3.485 0.213 H5 S5M 34 S5M H6 H6 H 0 1 N N N 10.400 22.716 8.628 5.315 -2.401 -0.675 H6 S5M 35 S5M H7 H7 H 0 1 N N N 11.745 20.483 14.822 5.666 3.488 -0.419 H7 S5M 36 S5M H8 H8 H 0 1 N N N 10.088 21.103 14.508 7.425 3.756 -0.442 H8 S5M 37 S5M H9 H9 H 0 1 N N N 10.750 19.762 13.512 6.678 2.650 -1.620 H9 S5M 38 S5M H10 H10 H 0 1 N N N 8.843 22.005 13.229 4.161 2.220 0.616 H10 S5M 39 S5M H11 H11 H 0 1 N N N 7.228 22.545 11.472 2.370 0.570 0.271 H11 S5M 40 S5M H12 H12 H 0 1 N N N 3.357 24.459 6.796 -1.278 -1.393 -2.270 H12 S5M 41 S5M H13 H13 H 0 1 N N N 2.248 17.091 4.749 -7.521 -0.605 2.259 H13 S5M 42 S5M H14 H14 H 0 1 N N N 12.010 22.181 10.392 7.091 -0.735 -0.329 H14 S5M 43 S5M H15 H15 H 0 1 N N N 12.643 22.751 14.611 6.898 1.546 2.508 H15 S5M 44 S5M H16 H16 H 0 1 N N N 12.352 23.723 13.129 7.554 3.111 1.969 H16 S5M 45 S5M H17 H17 H 0 1 N N N 11.005 23.404 14.273 5.794 2.843 1.991 H17 S5M 46 S5M H18 H18 H 0 1 N N N 13.568 20.924 13.264 8.228 0.830 -0.894 H18 S5M 47 S5M H19 H19 H 0 1 N N N 12.632 20.223 11.901 8.975 1.935 0.284 H19 S5M 48 S5M H20 H20 H 0 1 N N N 13.299 21.886 11.772 8.319 0.370 0.823 H20 S5M 49 S5M H21 H21 H 0 1 N N N -2.464 21.379 5.860 -5.281 3.614 -2.219 H21 S5M 50 S5M H22 H22 H 0 1 N N N 1.873 22.791 5.785 -3.468 -0.342 -1.883 H22 S5M 51 S5M H23 H23 H 0 1 N N N -0.115 22.262 6.631 -3.594 1.699 -1.681 H23 S5M 52 S5M H24 H24 H 0 1 N N N -2.149 19.016 4.868 -7.353 3.235 -0.784 H24 S5M 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S5M N1 C24 DOUB Y N 1 S5M N1 C1 SING Y N 2 S5M C24 N4 SING Y N 3 S5M N2 C1 SING Y N 4 S5M N2 C2 SING Y N 5 S5M C1 C4 DOUB Y N 6 S5M N4 C5 DOUB Y N 7 S5M C2 C3 DOUB Y N 8 S5M C4 C5 SING Y N 9 S5M C4 C3 SING Y N 10 S5M C5 C6 SING N N 11 S5M C23 C6 DOUB Y N 12 S5M C23 C22 SING Y N 13 S5M C6 C7 SING Y N 14 S5M C22 C9 DOUB Y N 15 S5M C7 C8 DOUB Y N 16 S5M O1 C11 DOUB N N 17 S5M C9 C8 SING Y N 18 S5M C9 C10 SING N N 19 S5M C10 N3 SING N N 20 S5M C11 N3 SING N N 21 S5M C11 C12 SING N N 22 S5M C13 C12 DOUB Y N 23 S5M C13 C14 SING Y N 24 S5M C12 C21 SING Y N 25 S5M C14 C15 DOUB Y N 26 S5M C21 C20 DOUB Y N 27 S5M C15 C20 SING Y N 28 S5M C15 C16 SING N N 29 S5M C19 C16 SING N N 30 S5M C16 C18 SING N N 31 S5M C16 C17 SING N N 32 S5M N3 H1 SING N N 33 S5M C7 H2 SING N N 34 S5M C8 H3 SING N N 35 S5M C10 H4 SING N N 36 S5M C10 H5 SING N N 37 S5M C13 H6 SING N N 38 S5M C17 H7 SING N N 39 S5M C17 H8 SING N N 40 S5M C17 H9 SING N N 41 S5M C20 H10 SING N N 42 S5M C21 H11 SING N N 43 S5M C22 H12 SING N N 44 S5M C24 H13 SING N N 45 S5M C14 H14 SING N N 46 S5M C18 H15 SING N N 47 S5M C18 H16 SING N N 48 S5M C18 H17 SING N N 49 S5M C19 H18 SING N N 50 S5M C19 H19 SING N N 51 S5M C19 H20 SING N N 52 S5M C2 H21 SING N N 53 S5M C23 H22 SING N N 54 S5M C3 H23 SING N N 55 S5M N2 H24 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S5M InChI InChI 1.03 "InChI=1S/C24H24N4O/c1-24(2,3)19-10-8-18(9-11-19)23(29)26-14-16-4-6-17(7-5-16)21-20-12-13-25-22(20)28-15-27-21/h4-13,15H,14H2,1-3H3,(H,26,29)(H,25,27,28)" S5M InChIKey InChI 1.03 ODLDMAFDYHTWSE-UHFFFAOYSA-N S5M SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)c1ccc(cc1)C(=O)NCc2ccc(cc2)c3ncnc4[nH]ccc34" S5M SMILES CACTVS 3.385 "CC(C)(C)c1ccc(cc1)C(=O)NCc2ccc(cc2)c3ncnc4[nH]ccc34" S5M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1ccc(cc1)C(=O)NCc2ccc(cc2)c3c4cc[nH]c4ncn3" S5M SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1ccc(cc1)C(=O)NCc2ccc(cc2)c3c4cc[nH]c4ncn3" # _pdbx_chem_comp_identifier.comp_id S5M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-~{tert}-butyl-~{N}-[[4-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S5M "Create component" 2020-03-04 RCSB S5M "Initial release" 2020-12-16 RCSB ##