data_SEE # _chem_comp.id SEE _chem_comp.name "trihydroxy(L-serinato-kappaO~3~)borate(1-)" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H9 B N O6" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2009-03-03 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 165.918 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SEE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3E2L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SEE N N N 0 1 N N N Y Y N 5.535 -12.381 -17.576 1.402 1.854 0.331 N SEE 1 SEE CA CA C 0 1 N N S Y N N 4.529 -12.048 -18.580 1.353 0.404 0.563 CA SEE 2 SEE CB CB C 0 1 N N N N N N 3.168 -12.306 -17.979 0.111 -0.179 -0.113 CB SEE 3 SEE OG OG O 0 1 N N N N N N 2.739 -13.636 -17.992 -1.063 0.344 0.512 OG SEE 4 SEE B B B -1 1 N N N N N N 3.343 -14.616 -17.037 -2.232 -0.120 -0.024 B SEE 5 SEE O1B O1B O 0 1 N N N N N N 4.441 -15.294 -17.622 -2.282 -1.480 0.099 O1B SEE 6 SEE O2B O2B O 0 1 N N N N N N 2.349 -15.578 -16.689 -3.289 0.437 0.640 O2B SEE 7 SEE O3B O3B O 0 1 N N N N N N 3.830 -13.960 -15.873 -2.294 0.221 -1.346 O3B SEE 8 SEE C C C 0 1 N N N Y N Y 4.596 -10.589 -19.041 2.588 -0.239 -0.013 C SEE 9 SEE O O O 0 1 N N N Y N Y 3.936 -10.228 -19.971 3.234 0.340 -0.854 O SEE 10 SEE H H H 0 1 N N N Y Y N 6.431 -12.457 -18.014 1.444 2.061 -0.656 H SEE 11 SEE H2 H2 H 0 1 N Y N Y Y N 5.563 -11.662 -16.882 0.616 2.316 0.764 H2 SEE 12 SEE HA HA H 0 1 N N N Y N N 4.719 -12.673 -19.465 1.308 0.209 1.635 HA SEE 13 SEE HB2 HB2 H 0 1 N N N N N N 3.206 -11.983 -16.928 0.111 0.092 -1.169 HB2 SEE 14 SEE HB3 HB3 H 0 1 N N N N N N 2.452 -11.751 -18.603 0.121 -1.265 -0.017 HB3 SEE 15 SEE OXT OXT O 0 1 N Y N Y N Y 5.445 -9.660 -18.361 2.971 -1.454 0.408 OXT SEE 16 SEE H6 H6 H 0 1 N N N N N N 4.266 -15.446 -18.543 -1.560 -1.942 -0.349 H6 SEE 17 SEE H7 H7 H 0 1 N N N N N N 2.424 -15.792 -15.766 -3.318 1.402 0.596 H7 SEE 18 SEE H8 H8 H 0 1 N N N N N N 3.939 -14.594 -15.174 -3.099 -0.076 -1.792 H8 SEE 19 SEE HXT HXT H 0 1 N Y N Y N Y 5.370 -8.805 -18.768 3.769 -1.826 0.010 HXT SEE 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SEE N CA SING N N 1 SEE N H SING N N 2 SEE N H2 SING N N 3 SEE CA CB SING N N 4 SEE CA C SING N N 5 SEE CA HA SING N N 6 SEE CB OG SING N N 7 SEE CB HB2 SING N N 8 SEE CB HB3 SING N N 9 SEE OG B SING N N 10 SEE B O1B SING N N 11 SEE B O2B SING N N 12 SEE B O3B SING N N 13 SEE C O DOUB N N 14 SEE C OXT SING N N 15 SEE O1B H6 SING N N 16 SEE O2B H7 SING N N 17 SEE O3B H8 SING N N 18 SEE OXT HXT SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SEE SMILES ACDLabs 10.04 "O=C(O)C(N)CO[B-](O)(O)O" SEE SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CO[B-](O)(O)O)C(O)=O" SEE SMILES CACTVS 3.341 "N[CH](CO[B-](O)(O)O)C(O)=O" SEE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[B-](O)(O)(O)OC[C@@H](C(=O)O)N" SEE SMILES "OpenEye OEToolkits" 1.5.0 "[B-](O)(O)(O)OCC(C(=O)O)N" SEE InChI InChI 1.03 "InChI=1S/C3H9BNO6/c5-2(3(6)7)1-11-4(8,9)10/h2,8-10H,1,5H2,(H,6,7)/q-1/t2-/m0/s1" SEE InChIKey InChI 1.03 IVIUHRYRMDVYGR-REOHCLBHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SEE "SYSTEMATIC NAME" ACDLabs 10.04 "trihydroxy(L-serinato-kappaO~3~)borate(1-)" SEE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-2-amino-3-hydroxy-3-oxo-propoxy]-trihydroxy-boron" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SEE "Create component" 2009-03-03 RCSB SEE "Modify descriptor" 2011-06-04 RCSB SEE "Modify backbone" 2023-11-03 PDBE #