data_SLM # _chem_comp.id SLM _chem_comp.name "(2S,4S,5R,6R)-5-acetamido-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxamide" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C11 H20 N2 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SIALYLAMIDE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-11-04 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.285 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SLM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XWO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SLM _pdbx_chem_comp_synonyms.name SIALYLAMIDE _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SLM C1 C1 C 0 1 N N N 7.616 -9.161 -11.044 1.297 3.157 0.372 C1 SLM 1 SLM C2 C2 C 0 1 N N S 8.874 -8.946 -11.915 0.436 2.082 -0.240 C2 SLM 2 SLM C3 C3 C 0 1 N N N 10.068 -8.534 -11.011 -1.018 2.284 0.193 C3 SLM 3 SLM C4 C4 C 0 1 N N S 11.236 -8.067 -11.863 -1.877 1.155 -0.384 C4 SLM 4 SLM C5 C5 C 0 1 N N R 10.757 -6.932 -12.741 -1.312 -0.190 0.083 C5 SLM 5 SLM C6 C6 C 0 1 N N R 9.622 -7.467 -13.625 0.153 -0.297 -0.346 C6 SLM 6 SLM C7 C7 C 0 1 N N R 9.063 -6.475 -14.623 0.741 -1.612 0.169 C7 SLM 7 SLM C8 C8 C 0 1 N N R 7.940 -7.102 -15.454 2.236 -1.662 -0.152 C8 SLM 8 SLM C9 C9 C 0 1 N N N 7.440 -6.146 -16.493 2.825 -2.977 0.364 C9 SLM 9 SLM C10 C10 C 0 1 N N N 12.368 -5.194 -13.416 -3.221 -1.705 0.057 C10 SLM 10 SLM C11 C11 C 0 1 N N N 13.448 -4.798 -14.433 -4.011 -2.826 -0.566 C11 SLM 11 SLM N5 N5 N 0 1 N N N 11.854 -6.395 -13.584 -2.081 -1.281 -0.523 N5 SLM 12 SLM O1A O1A O 0 1 N N N 7.248 -10.308 -10.772 2.264 2.852 1.038 O1A SLM 13 SLM O2 O2 O 0 1 N Y N 9.164 -10.151 -12.617 0.523 2.156 -1.665 O2 SLM 14 SLM O4 O4 O 0 1 N N N 12.326 -7.681 -11.002 -3.223 1.295 0.076 O4 SLM 15 SLM O6 O6 O 0 1 N N N 8.563 -7.901 -12.767 0.889 0.800 0.199 O6 SLM 16 SLM O7 O7 O 0 1 N N N 8.550 -5.322 -13.973 0.554 -1.696 1.583 O7 SLM 17 SLM O8 O8 O 0 1 N N N 8.396 -8.336 -16.058 2.423 -1.579 -1.566 O8 SLM 18 SLM O9 O9 O 0 1 N N N 8.362 -5.747 -17.498 4.240 -2.975 0.169 O9 SLM 19 SLM N1 N1 N 0 1 N N N 6.999 -8.030 -10.619 0.996 4.455 0.176 N1 SLM 20 SLM O10 O10 O 0 1 N N N 12.012 -4.407 -12.545 -3.611 -1.184 1.081 O10 SLM 21 SLM H11N H11N H 0 0 N N N 7.494 -7.234 -10.968 0.225 4.699 -0.360 H11N SLM 22 SLM H12N H12N H 0 0 N N N 6.179 -7.997 -10.047 1.550 5.147 0.570 H12N SLM 23 SLM H32 H31C H 0 1 N N N 9.754 -7.715 -10.347 -1.079 2.269 1.281 H32 SLM 24 SLM H31 H32C H 0 1 N N N 10.383 -9.403 -10.415 -1.379 3.243 -0.179 H31 SLM 25 SLM HO2 H2 H 0 1 N Y N 9.229 -9.968 -13.547 1.418 2.036 -2.011 HO2 SLM 26 SLM H4 H4 H 0 1 N N N 11.608 -8.870 -12.516 -1.855 1.201 -1.473 H4 SLM 27 SLM H5 H5 H 0 1 N N N 10.402 -6.105 -12.109 -1.380 -0.256 1.169 H5 SLM 28 SLM HO4 HA H 0 1 N Y N 13.121 -7.596 -11.515 -3.641 2.128 -0.179 HO4 SLM 29 SLM H6 H6 H 0 1 N N N 10.052 -8.282 -14.226 0.216 -0.272 -1.434 H6 SLM 30 SLM HN5 HB H 0 1 N N N 12.220 -6.972 -14.314 -1.769 -1.697 -1.341 HN5 SLM 31 SLM H7 H7 H 0 1 N N N 9.895 -6.186 -15.282 0.238 -2.449 -0.314 H7 SLM 32 SLM H8 H8 H 0 1 N N N 7.098 -7.332 -14.784 2.740 -0.825 0.332 H8 SLM 33 SLM HO7 HC H 0 1 N Y N 8.435 -5.504 -13.048 0.977 -0.981 2.079 HO7 SLM 34 SLM H92 H91C H 0 1 N N N 6.598 -6.636 -17.004 2.604 -3.083 1.426 H92 SLM 35 SLM H91 H92C H 0 1 N N N 7.191 -5.225 -15.945 2.384 -3.811 -0.183 H91 SLM 36 SLM HO8 HD H 0 1 N Y N 8.496 -8.213 -16.995 2.001 -2.294 -2.061 HO8 SLM 37 SLM HO9 H9 H 0 1 N Y N 7.908 -5.658 -18.328 4.681 -3.780 0.473 HO9 SLM 38 SLM H111 H111 H 0 0 N N N 12.995 -4.703 -15.431 -3.509 -3.165 -1.472 H111 SLM 39 SLM H113 H112 H 0 0 N N N 13.893 -3.836 -14.139 -4.086 -3.654 0.139 H113 SLM 40 SLM H112 H113 H 0 0 N N N 14.230 -5.571 -14.457 -5.011 -2.471 -0.816 H112 SLM 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SLM C1 C2 SING N N 1 SLM C1 O1A DOUB N N 2 SLM C1 N1 SING N N 3 SLM C2 C3 SING N N 4 SLM C2 O2 SING N N 5 SLM C2 O6 SING N N 6 SLM C3 C4 SING N N 7 SLM C4 C5 SING N N 8 SLM C4 O4 SING N N 9 SLM C5 C6 SING N N 10 SLM C5 N5 SING N N 11 SLM C6 C7 SING N N 12 SLM C6 O6 SING N N 13 SLM C7 C8 SING N N 14 SLM C7 O7 SING N N 15 SLM C8 C9 SING N N 16 SLM C8 O8 SING N N 17 SLM C9 O9 SING N N 18 SLM C10 C11 SING N N 19 SLM C10 N5 SING N N 20 SLM C10 O10 DOUB N N 21 SLM N1 H11N SING N N 22 SLM N1 H12N SING N N 23 SLM C3 H32 SING N N 24 SLM C3 H31 SING N N 25 SLM O2 HO2 SING N N 26 SLM C4 H4 SING N N 27 SLM C5 H5 SING N N 28 SLM O4 HO4 SING N N 29 SLM C6 H6 SING N N 30 SLM N5 HN5 SING N N 31 SLM C7 H7 SING N N 32 SLM C8 H8 SING N N 33 SLM O7 HO7 SING N N 34 SLM C9 H92 SING N N 35 SLM C9 H91 SING N N 36 SLM O8 HO8 SING N N 37 SLM O9 HO9 SING N N 38 SLM C11 H111 SING N N 39 SLM C11 H113 SING N N 40 SLM C11 H112 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SLM SMILES ACDLabs 10.04 "O=C(N)C1(O)OC(C(O)C(O)CO)C(NC(=O)C)C(O)C1" SLM SMILES_CANONICAL CACTVS 3.352 "CC(=O)N[C@@H]1[C@@H](O)C[C@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(N)=O" SLM SMILES CACTVS 3.352 "CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(N)=O" SLM SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC(=O)N[C@@H]1[C@H](C[C@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)N)O)O" SLM SMILES "OpenEye OEToolkits" 1.6.1 "CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)N)O)O" SLM InChI InChI 1.03 "InChI=1S/C11H20N2O8/c1-4(15)13-7-5(16)2-11(20,10(12)19)21-9(7)8(18)6(17)3-14/h5-9,14,16-18,20H,2-3H2,1H3,(H2,12,19)(H,13,15)/t5-,6+,7+,8+,9+,11-/m0/s1" SLM InChIKey InChI 1.03 PKSULYZGXFBQIQ-PFQGKNLYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SLM "SYSTEMATIC NAME" ACDLabs 10.04 ;(2S,4S,5R,6R)-5-(acetylamino)-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-carboxamide (non-preferred name) ; SLM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S,4S,5R,6R)-5-acetamido-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxamide" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support SLM "CARBOHYDRATE ISOMER" D PDB ? SLM "CARBOHYDRATE RING" pyranose PDB ? SLM "CARBOHYDRATE ANOMER" beta PDB ? SLM "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SLM "Create component" 2010-11-04 EBI SLM "Modify descriptor" 2011-06-04 RCSB SLM "Other modification" 2020-07-03 RCSB SLM "Modify name" 2020-07-17 RCSB SLM "Modify synonyms" 2020-07-17 RCSB SLM "Modify internal type" 2020-07-17 RCSB SLM "Modify linking type" 2020-07-17 RCSB SLM "Modify atom id" 2020-07-17 RCSB SLM "Modify component atom id" 2020-07-17 RCSB SLM "Modify leaving atom flag" 2020-07-17 RCSB ##