data_SVV # _chem_comp.id SVV _chem_comp.name "O-[(S)-AMINO(HYDROXY)PHOSPHORYL]-L-SERINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H9 N2 O5 P" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-02-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 184.088 _chem_comp.one_letter_code S _chem_comp.three_letter_code SVV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2JGJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SVV N N N 0 1 N N N N N N 25.587 12.148 14.330 -1.027 -2.041 -1.535 N SVV 1 SVV CA CA C 0 1 N N S N N N 26.686 12.449 13.390 -0.469 -2.117 -0.207 CA SVV 2 SVV C C C 0 1 N N N N N N 27.940 11.559 13.641 -1.234 -3.187 0.543 C SVV 3 SVV O O O 0 1 N N N N N N 27.858 10.329 13.438 -2.430 -3.415 0.420 O SVV 4 SVV CB CB C 0 1 N N N N N N 26.990 13.951 13.362 -0.564 -0.783 0.519 CB SVV 5 SVV OG OG O 0 1 N N N N N N 27.744 14.305 12.202 -0.039 -0.928 1.833 OG SVV 6 SVV O3 O3 O 0 1 N N N N N N 29.568 15.166 13.594 0.723 1.479 1.947 O3 SVV 7 SVV P1 P1 P 0 1 N N S N N N 28.946 15.372 12.237 -0.011 0.341 2.845 P1 SVV 8 SVV O2 O2 O 0 1 N N N N N N 28.830 16.773 11.736 0.772 0.036 4.094 O2 SVV 9 SVV N4 N4 N 0 1 N N N N N N 29.889 14.547 11.026 -1.571 0.848 3.061 N4 SVV 10 SVV OXT OXT O 0 1 N Y N N N N 29.069 12.146 14.070 -0.443 -3.852 1.425 OXT SVV 11 SVV HBC1 1HBC H 0 0 N N N N N N 27.497 14.284 14.297 -1.606 -0.457 0.608 HBC1 SVV 12 SVV HA2 2HA H 0 1 N N N N N N 26.059 14.559 13.447 0.000 -0.000 0.000 HA2 SVV 13 SVV H3 H3 H 0 1 N N N N N N 30.278 15.796 13.615 1.686 1.397 1.779 H3 SVV 14 SVV H4N1 1H4N H 0 0 N N N N N N 29.450 14.346 10.128 -2.219 0.186 3.484 H4N1 SVV 15 SVV H4N2 2H4N H 0 0 N N N N N N 30.652 15.224 11.048 -1.708 1.727 3.558 H4N2 SVV 16 SVV HA HA H 0 1 N N N N N N 25.049 11.365 14.321 -0.898 -4.534 1.963 HA SVV 17 SVV HN1 HN1 H 0 1 N N N N N N 25.951 12.080 15.259 -2.004 -1.827 -1.642 HN1 SVV 18 SVV HN2 HN2 H 0 1 N N N N N N 24.906 12.880 14.292 -0.492 -2.397 -2.309 HN2 SVV 19 SVV HC HC H 0 1 N N N N N N 26.349 12.183 12.377 0.572 -2.429 -0.348 HC SVV 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SVV N CA SING N N 1 SVV CA C SING N N 2 SVV C O DOUB N N 3 SVV CA CB SING N N 4 SVV CB OG SING N N 5 SVV OG P1 SING N N 6 SVV O3 P1 SING N N 7 SVV P1 O2 DOUB N N 8 SVV P1 N4 SING N N 9 SVV C OXT SING N N 10 SVV CB HBC1 SING N N 11 SVV CB HA2 SING N N 12 SVV O3 H3 SING N N 13 SVV N4 H4N1 SING N N 14 SVV N4 H4N2 SING N N 15 SVV OXT HA SING N N 16 SVV N HN1 SING N N 17 SVV N HN2 SING N N 18 SVV CA HC SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SVV SMILES ACDLabs 10.04 "O=P(O)(OCC(C(=O)O)N)N" SVV SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CO[P@](N)(O)=O)C(O)=O" SVV SMILES CACTVS 3.341 "N[CH](CO[P](N)(O)=O)C(O)=O" SVV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H](C(=O)O)N)O[P@](=O)(N)O" SVV SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(=O)O)N)OP(=O)(N)O" SVV InChI InChI 1.03 "InChI=1S/C3H9N2O5P/c4-2(3(6)7)1-10-11(5,8)9/h2H,1,4H2,(H,6,7)(H3,5,8,9)/t2-/m0/s1" SVV InChIKey InChI 1.03 MSLTYEXLEBVFLN-REOHCLBHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SVV "SYSTEMATIC NAME" ACDLabs 10.04 "O-[(S)-amino(hydroxy)phosphoryl]-L-serine" SVV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(amino-hydroxy-phosphoryl)oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SVV "Modify model coordinates code" 2011-05-03 EBI SVV "Modify leaving atom flag" 2011-05-03 EBI SVV "Modify linking type" 2011-05-03 EBI SVV "Modify internal type" 2011-05-03 EBI SVV "Modify parent residue" 2011-05-03 EBI SVV "Modify processing site" 2011-05-03 EBI SVV "Modify one letter code" 2011-05-03 EBI SVV "Other modification" 2011-05-03 EBI SVV "Modify linking type" 2011-05-05 EBI SVV "Modify descriptor" 2011-06-04 RCSB SVV "Modify PCM" 2024-09-27 PDBE #