data_SWG # _chem_comp.id SWG _chem_comp.name "2-[(4Z)-2-[(1R)-1-amino-2-hydroxy-ethyl]-4-(1H-indol-3-ylmethylidene)-5-oxo-imidazol-1-yl]ethanoic acid" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H16 N4 O4" _chem_comp.mon_nstd_parent_comp_id "SER, TRP, GLY" _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-25 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 328.323 _chem_comp.one_letter_code SWG _chem_comp.three_letter_code SWG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2YE0 _chem_comp.pdbx_subcomponent_list "SER TRY GLY" _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SWG CD2 CD2 C 0 1 Y N N N N N 29.546 29.414 38.268 3.777 -0.396 -0.047 CD2 TRY 1 SWG CE3 CE3 C 0 1 Y N N N N N 30.163 29.928 39.441 4.570 -1.507 -0.318 CE3 TRY 2 SWG CZ3 CZ3 C 0 1 Y N N N N N 31.381 30.600 39.378 5.941 -1.409 -0.217 CZ3 TRY 3 SWG CH2 CH2 C 0 1 Y N N N N N 31.972 30.745 38.092 6.530 -0.209 0.152 CH2 TRY 4 SWG CZ2 CZ2 C 0 1 Y N N N N N 31.384 30.246 36.916 5.757 0.899 0.423 CZ2 TRY 5 SWG CE2 CE2 C 0 1 Y N N N N N 30.157 29.577 37.032 4.372 0.820 0.327 CE2 TRY 6 SWG NE1 NE1 N 0 1 Y N N N N N 29.371 29.001 36.087 3.360 1.737 0.530 NE1 TRY 7 SWG CD1 CD1 C 0 1 Y N N N N N 28.262 28.467 36.686 2.151 1.171 0.307 CD1 TRY 8 SWG CG CG C 0 1 Y N N N N N 28.302 28.682 38.017 2.322 -0.149 -0.061 CG TRY 9 SWG CB2 CB2 C 0 1 N N N N N N 27.315 28.284 39.088 1.306 -1.078 -0.384 CB TRY 10 SWG CA2 CA2 C 0 1 N N N Y N N 26.116 27.676 38.711 -0.022 -0.692 -0.351 CA2 TRY 11 SWG N2 N2 N 0 1 N N N Y N N 25.782 27.311 37.437 -0.513 0.543 -0.029 N2 TRY 12 SWG C2 C2 C 0 1 N N N Y N N 25.036 27.341 39.634 -1.193 -1.520 -0.661 C2 TRY 13 SWG O2 O2 O 0 1 N N N Y N N 24.965 27.513 40.855 -1.202 -2.691 -0.999 O2 TRY 14 SWG N3 N3 N 0 1 N N N Y N N 24.125 26.796 38.856 -2.260 -0.708 -0.490 N GLY 15 SWG CA3 CA3 C 0 1 N N N Y N N 22.857 26.315 39.412 -3.663 -1.084 -0.682 CA GLY 16 SWG C3 C3 C 0 1 N N N Y N Y 22.600 24.988 39.972 -4.225 -1.607 0.615 C GLY 17 SWG O3 O3 O 0 1 N N N Y N Y 21.744 24.781 40.834 -3.526 -1.660 1.599 O GLY 18 SWG OXT OXT O 0 1 N Y N Y N Y 23.489 24.061 39.486 -5.503 -2.013 0.677 OXT GLY 19 SWG C1 C1 C 0 1 N N N Y N N 24.528 26.767 37.582 -1.807 0.524 -0.110 C SER 20 SWG CA1 CA1 C 0 1 N N R Y N N 23.781 26.235 36.426 -2.695 1.707 0.175 CA SER 21 SWG N1 N1 N 0 1 N N N Y Y N 22.830 27.326 36.097 -2.114 2.505 1.263 N SER 22 SWG CB1 CB1 C 0 1 N N N N N N 24.544 25.978 35.161 -2.815 2.570 -1.083 CB SER 23 SWG OG1 OG1 O 0 1 N N N N N N 25.382 24.849 35.442 -3.748 3.627 -0.849 OG SER 24 SWG HE3 HE3 H 0 1 N N N N N N 29.679 29.795 40.397 4.113 -2.443 -0.605 HE3 TRY 25 SWG HZ3 HZ3 H 0 1 N N N N N N 31.855 30.993 40.265 6.559 -2.270 -0.426 HZ3 TRY 26 SWG HH2 HH2 H 0 1 N N N N N N 32.917 31.263 38.015 7.606 -0.142 0.229 HH2 TRY 27 SWG HZ2 HZ2 H 0 1 N N N N N N 31.861 30.374 35.956 6.227 1.829 0.710 HZ2 TRY 28 SWG HE1 HE1 H 0 1 N N N N N N 29.571 28.971 35.108 3.497 2.660 0.798 HE1 TRY 29 SWG HD1 HD1 H 0 1 N N N N N N 27.469 27.948 36.168 1.200 1.675 0.398 HD1 TRY 30 SWG HB2 HB2 H 0 1 N N N N N N 27.533 28.467 40.130 1.567 -2.090 -0.657 HB2 TRY 31 SWG HA31 HA31 H 0 0 N N N Y N N 22.651 27.003 40.245 -4.233 -0.211 -0.999 HA2 GLY 32 SWG HA32 HA32 H 0 0 N N N Y N N 22.252 26.259 38.495 -3.730 -1.859 -1.446 HA3 GLY 33 SWG HXT HXT H 0 1 N Y N Y N Y 23.345 23.227 39.917 -5.818 -2.341 1.531 HXT GLY 34 SWG HA1 HA1 H 0 1 N N N Y N N 23.384 25.254 36.725 -3.684 1.356 0.470 HA SER 35 SWG H H11N H 0 0 N N N Y Y N 22.616 27.844 36.926 -2.084 1.977 2.122 H SER 36 SWG H2 H12N H 0 0 N Y N Y Y N 23.243 27.936 35.421 -1.196 2.842 1.014 H2 SER 37 SWG HB11 HB11 H 0 0 N N N N N N 23.859 25.759 34.329 -1.840 2.993 -1.327 HB2 SER 38 SWG HB12 HB12 H 0 0 N N N N N N 25.133 26.856 34.856 -3.162 1.956 -1.913 HB3 SER 39 SWG HG1 HG1 H 0 1 N N N N N N 25.567 24.383 34.635 -3.874 4.215 -1.605 HG SER 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SWG CD2 CE3 SING Y N 1 SWG CD2 CE2 DOUB Y N 2 SWG CD2 CG SING Y N 3 SWG CE3 CZ3 DOUB Y N 4 SWG CZ3 CH2 SING Y N 5 SWG CH2 CZ2 DOUB Y N 6 SWG CZ2 CE2 SING Y N 7 SWG CE2 NE1 SING Y N 8 SWG NE1 CD1 SING Y N 9 SWG CD1 CG DOUB Y N 10 SWG CG CB2 SING N N 11 SWG CB2 CA2 DOUB N N 12 SWG CA2 N2 SING N N 13 SWG CA2 C2 SING N N 14 SWG N2 C1 DOUB N N 15 SWG C2 O2 DOUB N N 16 SWG C2 N3 SING N N 17 SWG N3 CA3 SING N Z 18 SWG N3 C1 SING N N 19 SWG CA3 C3 SING N N 20 SWG C3 O3 DOUB N N 21 SWG C3 OXT SING N N 22 SWG C1 CA1 SING N N 23 SWG CA1 N1 SING N N 24 SWG CA1 CB1 SING N N 25 SWG CB1 OG1 SING N N 26 SWG CE3 HE3 SING N N 27 SWG CZ3 HZ3 SING N N 28 SWG CH2 HH2 SING N N 29 SWG CZ2 HZ2 SING N N 30 SWG NE1 HE1 SING N N 31 SWG CD1 HD1 SING N N 32 SWG CB2 HB2 SING N N 33 SWG CA3 HA31 SING N N 34 SWG CA3 HA32 SING N N 35 SWG CA1 HA1 SING N N 36 SWG N1 H SING N N 37 SWG N1 H2 SING N N 38 SWG CB1 HB11 SING N N 39 SWG CB1 HB12 SING N N 40 SWG OG1 HG1 SING N N 41 SWG OXT HXT SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SWG SMILES_CANONICAL CACTVS 3.352 "N[C@@H](CO)C1=N\\C(=C/c2c[nH]c3ccccc23)C(=O)N1CC(O)=O" SWG SMILES CACTVS 3.352 "N[CH](CO)C1=NC(=Cc2c[nH]c3ccccc23)C(=O)N1CC(O)=O" SWG SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "c1ccc2c(c1)c(c[nH]2)\\C=C/3\\C(=O)N(C(=N3)[C@H](CO)N)CC(=O)O" SWG SMILES "OpenEye OEToolkits" 1.6.1 "c1ccc2c(c1)c(c[nH]2)C=C3C(=O)N(C(=N3)C(CO)N)CC(=O)O" SWG InChI InChI 1.03 "InChI=1S/C16H16N4O4/c17-11(8-21)15-19-13(16(24)20(15)7-14(22)23)5-9-6-18-12-4-2-1-3-10(9)12/h1-6,11,18,21H,7-8,17H2,(H,22,23)/b13-5-/t11-/m0/s1" SWG InChIKey InChI 1.03 JQODGFVDKNHIFR-LEBPBNDJSA-N # _pdbx_chem_comp_identifier.comp_id SWG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "2-[(4Z)-2-[(1R)-1-amino-2-hydroxy-ethyl]-4-(1H-indol-3-ylmethylidene)-5-oxo-imidazol-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SWG "Create component" 2011-03-25 EBI SWG "Other modification" 2011-05-03 EBI SWG "Modify name" 2011-05-06 EBI SWG "Modify value order" 2011-05-06 EBI SWG "Other modification" 2011-05-06 EBI SWG "Modify name" 2011-05-10 EBI SWG "Modify value order" 2011-05-10 EBI SWG "Other modification" 2011-05-10 EBI SWG "Modify aromatic_flag" 2011-06-04 RCSB SWG "Modify descriptor" 2011-06-04 RCSB SWG "Modify backbone" 2023-11-03 PDBE #