data_SYX # _chem_comp.id SYX _chem_comp.name "(4-methylpiperazin-1-yl)[(2R)-oxolan-2-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-28 _chem_comp.pdbx_modified_date 2023-11-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 198.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SYX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GOW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SYX N1 N1 N 0 1 N N N N N N 14.556 -8.503 -27.621 0.560 0.348 0.337 N1 SYX 1 SYX C4 C1 C 0 1 N N N N N N 15.961 -7.765 -29.487 2.192 -1.278 -0.458 C4 SYX 2 SYX C5 C2 C 0 1 N N N N N N 14.290 -9.066 -26.433 -0.658 0.789 -0.036 C5 SYX 3 SYX C6 C3 C 0 1 N N R N N N 12.878 -8.896 -25.873 -1.708 -0.191 -0.491 C6 SYX 4 SYX C7 C4 C 0 1 N N N N N N 12.405 -10.110 -25.158 -2.103 -1.115 0.677 C7 SYX 5 SYX C8 C5 C 0 1 N N N N N N 12.227 -9.676 -23.719 -3.627 -0.890 0.839 C8 SYX 6 SYX N N2 N 0 1 N N N N N N 14.835 -7.508 -30.388 3.230 -0.417 0.123 N SYX 7 SYX C C6 C 0 1 N N N N N N 14.888 -8.394 -31.562 4.544 -0.693 -0.475 C SYX 8 SYX O O1 O 0 1 N N N N N N 15.131 -9.699 -25.822 -0.909 1.976 -0.006 O SYX 9 SYX C1 C7 C 0 1 N N N N N N 13.568 -7.665 -29.670 2.881 1.008 -0.005 C1 SYX 10 SYX C2 C8 C 0 1 N N N N N N 13.754 -7.422 -28.194 1.598 1.288 0.785 C2 SYX 11 SYX C3 C9 C 0 1 N N N N N N 15.643 -8.900 -28.521 0.883 -1.086 0.314 C3 SYX 12 SYX C9 C10 C 0 1 N N N N N N 12.043 -8.213 -23.840 -4.019 -0.316 -0.546 C9 SYX 13 SYX O1 O2 O 0 1 N N N N N N 12.838 -7.798 -24.956 -2.892 0.514 -0.899 O1 SYX 14 SYX H1 H1 H 0 1 N N N N N N 16.844 -8.038 -30.084 2.041 -1.009 -1.504 H1 SYX 15 SYX H2 H2 H 0 1 N N N N N N 16.176 -6.853 -28.911 2.504 -2.320 -0.392 H2 SYX 16 SYX H3 H3 H 0 1 N N N N N N 12.198 -8.695 -26.714 -1.324 -0.786 -1.321 H3 SYX 17 SYX H4 H4 H 0 1 N N N N N N 11.449 -10.457 -25.578 -1.896 -2.156 0.428 H4 SYX 18 SYX H5 H5 H 0 1 N N N N N N 13.151 -10.915 -25.229 -1.576 -0.827 1.586 H5 SYX 19 SYX H6 H6 H 0 1 N N N N N N 11.343 -10.151 -23.268 -4.141 -1.832 1.030 H6 SYX 20 SYX H7 H7 H 0 1 N N N N N N 13.118 -9.915 -23.120 -3.831 -0.170 1.632 H7 SYX 21 SYX H9 H9 H 0 1 N N N N N N 15.847 -8.257 -32.082 5.305 -0.099 0.031 H9 SYX 22 SYX H10 H10 H 0 1 N N N N N N 14.794 -9.440 -31.236 4.777 -1.752 -0.366 H10 SYX 23 SYX H11 H11 H 0 1 N N N N N N 14.062 -8.147 -32.245 4.523 -0.432 -1.533 H11 SYX 24 SYX H12 H12 H 0 1 N N N N N N 12.838 -6.943 -30.065 3.695 1.619 0.386 H12 SYX 25 SYX H13 H13 H 0 1 N N N N N N 13.192 -8.687 -29.822 2.718 1.249 -1.056 H13 SYX 26 SYX H14 H14 H 0 1 N N N N N N 14.270 -6.462 -28.042 1.271 2.312 0.600 H14 SYX 27 SYX H15 H15 H 0 1 N N N N N N 12.771 -7.393 -27.700 1.786 1.148 1.849 H15 SYX 28 SYX H16 H16 H 0 1 N N N N N N 15.337 -9.789 -29.092 1.002 -1.451 1.334 H16 SYX 29 SYX H17 H17 H 0 1 N N N N N N 16.539 -9.136 -27.928 0.082 -1.634 -0.183 H17 SYX 30 SYX H18 H18 H 0 1 N N N N N N 12.382 -7.709 -22.923 -4.147 -1.119 -1.272 H18 SYX 31 SYX H19 H19 H 0 1 N N N N N N 10.984 -7.976 -24.018 -4.929 0.280 -0.470 H19 SYX 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SYX C N SING N N 1 SYX N C1 SING N N 2 SYX N C4 SING N N 3 SYX C1 C2 SING N N 4 SYX C4 C3 SING N N 5 SYX C3 N1 SING N N 6 SYX C2 N1 SING N N 7 SYX N1 C5 SING N N 8 SYX C5 C6 SING N N 9 SYX C5 O DOUB N N 10 SYX C6 C7 SING N N 11 SYX C6 O1 SING N N 12 SYX C7 C8 SING N N 13 SYX O1 C9 SING N N 14 SYX C9 C8 SING N N 15 SYX C4 H1 SING N N 16 SYX C4 H2 SING N N 17 SYX C6 H3 SING N N 18 SYX C7 H4 SING N N 19 SYX C7 H5 SING N N 20 SYX C8 H6 SING N N 21 SYX C8 H7 SING N N 22 SYX C H9 SING N N 23 SYX C H10 SING N N 24 SYX C H11 SING N N 25 SYX C1 H12 SING N N 26 SYX C1 H13 SING N N 27 SYX C2 H14 SING N N 28 SYX C2 H15 SING N N 29 SYX C3 H16 SING N N 30 SYX C3 H17 SING N N 31 SYX C9 H18 SING N N 32 SYX C9 H19 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SYX SMILES ACDLabs 12.01 "O=C(N1CCN(C)CC1)C1CCCO1" SYX InChI InChI 1.06 "InChI=1S/C10H18N2O2/c1-11-4-6-12(7-5-11)10(13)9-3-2-8-14-9/h9H,2-8H2,1H3/t9-/m1/s1" SYX InChIKey InChI 1.06 ZSHARPJAQXGCMB-SECBINFHSA-N SYX SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)C(=O)[C@H]2CCCO2" SYX SMILES CACTVS 3.385 "CN1CCN(CC1)C(=O)[CH]2CCCO2" SYX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)[C@H]2CCCO2" SYX SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)C2CCCO2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SYX "SYSTEMATIC NAME" ACDLabs 12.01 "(4-methylpiperazin-1-yl)[(2R)-oxolan-2-yl]methanone" SYX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4-methylpiperazin-1-yl)-[(2~{R})-oxolan-2-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SYX "Create component" 2023-08-28 RCSB SYX "Initial release" 2023-11-29 RCSB #