data_T23 # _chem_comp.id T23 _chem_comp.name "2'-O-METHYL-3'-METHYL-3'-DEOXY-ARABINOFURANOSYL-THYMINE-5'-PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H19 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-12-29 _chem_comp.pdbx_modified_date 2022-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces MEP _chem_comp.formula_weight 350.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T23 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DPL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T23 P P P 0 1 N N N 10.575 4.871 4.832 -1.034 0.007 -4.320 P T23 1 T23 OP1 O1P O 0 1 N N N 11.737 5.382 4.058 -1.573 -1.299 -3.883 OP1 T23 2 T23 OP2 O2P O 0 1 N N N 10.796 4.144 6.115 -2.214 0.883 -4.977 OP2 T23 3 T23 OP3 O3P O 0 1 N Y N 9.773 3.987 3.773 0.128 -0.228 -5.408 OP3 T23 4 T23 "O5'" O5* O 0 1 N N N 9.543 6.040 5.222 -0.429 0.790 -3.049 "O5'" T23 5 T23 N1 N1 N 0 1 N N N 6.197 6.621 7.309 -0.039 0.345 2.057 N1 T23 6 T23 C6 C6 C 0 1 N N N 7.104 5.597 7.366 -0.165 1.163 3.147 C6 T23 7 T23 C2 C2 C 0 1 N N N 5.171 6.725 8.237 -0.786 -0.767 1.946 C2 T23 8 T23 O2 O2 O 0 1 N N N 4.380 7.668 8.242 -0.658 -1.480 0.969 O2 T23 9 T23 N3 N3 N 0 1 N N N 5.099 5.703 9.144 -1.666 -1.109 2.906 N3 T23 10 T23 C4 C4 C 0 1 N N N 5.981 4.656 9.276 -1.819 -0.329 3.995 C4 T23 11 T23 O4 O4 O 0 1 N N N 5.794 3.836 10.168 -2.618 -0.635 4.862 O4 T23 12 T23 C5 C5 C 0 1 N N N 7.041 4.624 8.293 -1.043 0.847 4.122 C5 T23 13 T23 C5M C5M C 0 1 N N N 8.043 3.505 8.360 -1.196 1.735 5.330 C5M T23 14 T23 "C2'" C2* C 0 1 N N R 7.088 8.897 6.704 1.905 -0.476 0.752 "C2'" T23 15 T23 "O2'" O2* O 0 1 N N N 6.673 10.030 6.049 3.019 -0.394 1.644 "O2'" T23 16 T23 C2M C2M C 0 1 N N N 5.479 10.688 6.472 2.709 -1.220 2.768 C2M T23 17 T23 "C5'" C5* C 0 1 N N N 9.125 6.970 4.228 0.607 -0.032 -2.512 "C5'" T23 18 T23 "C4'" C4* C 0 1 N N S 8.125 7.920 4.873 1.227 0.657 -1.296 "C4'" T23 19 T23 "O4'" O4* O 0 1 N N N 6.887 7.167 5.124 0.236 0.827 -0.269 "O4'" T23 20 T23 "C1'" C1* C 0 1 N N R 6.272 7.723 6.273 0.913 0.688 0.998 "C1'" T23 21 T23 "C3'" C3* C 0 1 N N R 8.491 8.516 6.214 2.348 -0.222 -0.709 "C3'" T23 22 T23 C3M C3M C 0 1 N N N 9.551 9.640 6.215 3.687 0.517 -0.742 C3M T23 23 T23 HOP2 2HOP H 0 0 N N N 10.053 3.817 6.609 -2.548 0.379 -5.733 HOP2 T23 24 T23 HOP3 3HOP H 0 0 N N N 9.030 3.660 4.267 0.452 0.645 -5.665 HOP3 T23 25 T23 H6 H6 H 0 1 N N N 7.924 5.553 6.630 0.435 2.057 3.227 H6 T23 26 T23 H3 H3 H 0 1 N N N 4.307 5.723 9.787 -2.194 -1.917 2.811 H3 T23 27 T23 H5A1 1H5A H 0 0 N N N 7.990 2.698 9.128 -1.947 1.315 5.998 H5A1 T23 28 T23 H5A2 2H5A H 0 0 N N N 8.067 3.014 7.358 -0.242 1.805 5.853 H5A2 T23 29 T23 H5A3 3H5A H 0 0 N N N 9.056 3.964 8.422 -1.509 2.730 5.012 H5A3 T23 30 T23 "H2'" H2* H 0 1 N N N 7.021 9.107 7.796 1.404 -1.439 0.845 "H2'" T23 31 T23 H2M1 1H2M H 0 0 N N N 5.142 11.608 5.940 3.534 -1.190 3.479 H2M1 T23 32 T23 H2M2 2H2M H 0 0 N N N 4.644 9.948 6.468 1.801 -0.855 3.248 H2M2 T23 33 T23 H2M3 3H2M H 0 0 N N N 5.564 10.917 7.559 2.555 -2.246 2.433 H2M3 T23 34 T23 "H5'" 1H5* H 0 1 N N N 9.978 7.501 3.745 1.374 -0.190 -3.270 "H5'" T23 35 T23 "H5''" 2H5* H 0 0 N N N 8.723 6.474 3.313 0.190 -0.993 -2.212 "H5''" T23 36 T23 "H4'" H4* H 0 1 N N N 8.060 8.766 4.150 1.631 1.627 -1.585 "H4'" T23 37 T23 "H1'" H1* H 0 1 N N N 5.236 8.094 6.093 1.450 1.603 1.249 "H1'" T23 38 T23 "H3'" H3* H 0 1 N N N 9.049 7.824 6.887 2.419 -1.163 -1.255 "H3'" T23 39 T23 H3M1 1H3M H 0 0 N N N 10.570 9.363 5.858 3.982 0.687 -1.777 H3M1 T23 40 T23 H3M2 2H3M H 0 0 N N N 9.173 10.511 5.631 3.585 1.475 -0.231 H3M2 T23 41 T23 H3M3 3H3M H 0 0 N N N 9.618 10.090 7.232 4.446 -0.082 -0.241 H3M3 T23 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T23 P OP1 DOUB N N 1 T23 P OP2 SING N N 2 T23 P OP3 SING N N 3 T23 P "O5'" SING N N 4 T23 OP2 HOP2 SING N N 5 T23 OP3 HOP3 SING N N 6 T23 "O5'" "C5'" SING N N 7 T23 N1 C6 SING N N 8 T23 N1 C2 SING N N 9 T23 N1 "C1'" SING N N 10 T23 C6 C5 DOUB N N 11 T23 C6 H6 SING N N 12 T23 C2 O2 DOUB N N 13 T23 C2 N3 SING N N 14 T23 N3 C4 SING N N 15 T23 N3 H3 SING N N 16 T23 C4 O4 DOUB N N 17 T23 C4 C5 SING N N 18 T23 C5 C5M SING N N 19 T23 C5M H5A1 SING N N 20 T23 C5M H5A2 SING N N 21 T23 C5M H5A3 SING N N 22 T23 "C2'" "O2'" SING N N 23 T23 "C2'" "C1'" SING N N 24 T23 "C2'" "C3'" SING N N 25 T23 "C2'" "H2'" SING N N 26 T23 "O2'" C2M SING N N 27 T23 C2M H2M1 SING N N 28 T23 C2M H2M2 SING N N 29 T23 C2M H2M3 SING N N 30 T23 "C5'" "C4'" SING N N 31 T23 "C5'" "H5'" SING N N 32 T23 "C5'" "H5''" SING N N 33 T23 "C4'" "O4'" SING N N 34 T23 "C4'" "C3'" SING N N 35 T23 "C4'" "H4'" SING N N 36 T23 "O4'" "C1'" SING N N 37 T23 "C1'" "H1'" SING N N 38 T23 "C3'" C3M SING N N 39 T23 "C3'" "H3'" SING N N 40 T23 C3M H3M1 SING N N 41 T23 C3M H3M2 SING N N 42 T23 C3M H3M3 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T23 SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(C2OC)C)COP(=O)(O)O" T23 SMILES_CANONICAL CACTVS 3.341 "CO[C@@H]1[C@H](C)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=O" T23 SMILES CACTVS 3.341 "CO[CH]1[CH](C)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O" T23 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@H](O[C@H]([C@@H]1OC)N2C=C(C(=O)NC2=O)C)COP(=O)(O)O" T23 SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(OC(C1OC)N2C=C(C(=O)NC2=O)C)COP(=O)(O)O" T23 InChI InChI 1.03 "InChI=1S/C12H19N2O8P/c1-6-4-14(12(16)13-10(6)15)11-9(20-3)7(2)8(22-11)5-21-23(17,18)19/h4,7-9,11H,5H2,1-3H3,(H,13,15,16)(H2,17,18,19)/t7-,8-,9-,11-/m1/s1" T23 InChIKey InChI 1.03 MCXXETKRWYMFCI-TURQNECASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T23 "SYSTEMATIC NAME" ACDLabs 10.04 ;3'-deoxy-3',5-dimethyl-2'-O-methyluridine 5'-(dihydrogen phosphate) ; T23 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3R,4R,5R)-4-methoxy-3-methyl-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T23 "Create component" 1999-12-29 EBI T23 "Modify descriptor" 2011-06-04 RCSB T23 "Other modification" 2018-03-14 EBI T23 "Modify parent residue" 2022-06-13 RCSB #