data_T46 # _chem_comp.id T46 _chem_comp.name dTDP-4-keto-6-deoxyglucose _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 N2 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-01-08 _chem_comp.pdbx_modified_date 2014-04-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 546.314 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T46 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4O9G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T46 C4 C4 C 0 1 N N N -5.997 -23.161 12.069 7.326 2.185 -0.064 C4 T46 1 T46 C5 C5 C 0 1 N N R -5.693 -21.717 12.411 6.768 1.397 -1.230 C5 T46 2 T46 C6 C6 C 0 1 N N N -6.264 -21.408 13.776 7.512 0.067 -1.357 C6 T46 3 T46 C21 C21 C 0 1 N N N 2.797 -26.210 9.087 -5.895 0.786 -0.905 C21 T46 4 T46 O21 O21 O 0 1 N N N 3.771 -26.545 8.389 -5.455 -0.159 -1.531 O21 T46 5 T46 N31 N31 N 0 1 N N N 2.597 -26.874 10.235 -6.530 1.777 -1.559 N31 T46 6 T46 C41 C41 C 0 1 N N N 1.567 -26.573 11.045 -7.023 2.832 -0.881 C41 T46 7 T46 O41 O41 O 0 1 N N N 1.405 -27.213 12.105 -7.598 3.728 -1.472 O41 T46 8 T46 C51 C51 C 0 1 N N N 0.722 -25.530 10.700 -6.869 2.887 0.526 C51 T46 9 T46 C5A C5A C 0 1 N N N -0.425 -25.163 11.598 -7.412 4.055 1.308 C5A T46 10 T46 C61 C61 C 0 1 N N N 0.957 -24.849 9.517 -6.228 1.880 1.156 C61 T46 11 T46 N11 N11 N 0 1 N N N 1.976 -25.211 8.725 -5.747 0.824 0.431 N11 T46 12 T46 C1, C1, C 0 1 N N R 2.231 -24.448 7.504 -5.052 -0.269 1.116 C1, T46 13 T46 C2, C2, C 0 1 N N N 1.209 -24.616 6.392 -5.808 -1.600 0.908 C2, T46 14 T46 C3, C3, C 0 1 N N S 1.349 -23.270 5.699 -4.686 -2.652 0.764 C3, T46 15 T46 O3, O3, O 0 1 N N N 2.459 -23.351 4.833 -4.776 -3.626 1.806 O3, T46 16 T46 O4, O4, O 0 1 N N N 2.205 -23.058 7.873 -3.753 -0.488 0.524 O4, T46 17 T46 C4, C4, C 0 1 N N R 1.742 -22.279 6.767 -3.384 -1.832 0.902 C4, T46 18 T46 C5, C5, C 0 1 N N N 0.575 -21.406 7.187 -2.310 -2.375 -0.043 C5, T46 19 T46 O5, O5, O 0 1 N N N -0.525 -22.271 7.394 -1.082 -1.680 0.182 O5, T46 20 T46 P P P 0 1 N N N -2.003 -21.684 7.446 0.267 -1.994 -0.640 P T46 21 T46 O1P O1P O 0 1 N N N -2.244 -20.744 6.294 0.591 -3.434 -0.524 O1P T46 22 T46 O2P O2P O 0 1 N N N -2.942 -22.830 7.539 0.051 -1.616 -2.190 O2P T46 23 T46 OPP OPP O 0 1 N N N -1.976 -20.814 8.796 1.478 -1.121 -0.038 OPP T46 24 T46 P2 P2 P 0 1 N N N -3.234 -20.027 9.410 3.080 -1.182 -0.182 P2 T46 25 T46 O4P O4P O 0 1 N N N -2.709 -19.139 10.496 3.651 -2.409 0.690 O4P T46 26 T46 O3P O3P O 0 1 N N N -4.016 -19.391 8.274 3.441 -1.378 -1.604 O3P T46 27 T46 O1 O1 O 0 1 N N N -4.102 -21.231 10.058 3.720 0.197 0.349 O1 T46 28 T46 C1 C1 C 0 1 N N R -3.596 -21.873 11.249 5.114 0.495 0.256 C1 T46 29 T46 C2 C2 C 0 1 N N R -3.681 -23.405 11.127 5.525 1.393 1.424 C2 T46 30 T46 O2 O2 O 0 1 N N N -3.020 -23.730 9.893 4.802 2.624 1.357 O2 T46 31 T46 C3 C3 C 0 1 N N R -5.126 -23.885 11.083 7.029 1.683 1.334 C3 T46 32 T46 O3 O3 O 0 1 N N N -5.266 -25.293 11.265 7.767 0.484 1.584 O3 T46 33 T46 O4 O4 O 0 1 N N N -7.000 -23.735 12.527 7.990 3.178 -0.243 O4 T46 34 T46 O5 O5 O 0 1 N N N -4.291 -21.392 12.390 5.379 1.151 -0.984 O5 T46 35 T46 H1 H1 H 0 1 N N N -6.213 -21.083 11.678 6.882 1.971 -2.150 H1 T46 36 T46 H2 H2 H 0 1 N N N -6.049 -20.361 14.035 7.387 -0.509 -0.440 H2 T46 37 T46 H3 H3 H 0 1 N N N -7.352 -21.566 13.762 7.107 -0.498 -2.197 H3 T46 38 T46 H4 H4 H 0 1 N N N -5.806 -22.072 14.524 8.572 0.258 -1.525 H4 T46 39 T46 H5 H5 H 0 1 N N N 3.226 -27.607 10.493 -6.631 1.732 -2.523 H5 T46 40 T46 H6 H6 H 0 1 N N N -0.429 -25.824 12.477 -7.891 4.758 0.626 H6 T46 41 T46 H7 H7 H 0 1 N N N -0.314 -24.119 11.926 -8.142 3.698 2.034 H7 T46 42 T46 H8 H8 H 0 1 N N N -1.371 -25.277 11.049 -6.595 4.554 1.830 H8 T46 43 T46 H9 H9 H 0 1 N N N 0.319 -24.026 9.232 -6.101 1.905 2.228 H9 T46 44 T46 H10 H10 H 0 1 N N N 3.225 -24.709 7.111 -4.953 -0.049 2.178 H10 T46 45 T46 H11 H11 H 0 1 N N N 0.194 -24.767 6.789 -6.432 -1.824 1.774 H11 T46 46 T46 H12 H12 H 0 1 N N N 1.468 -25.449 5.722 -6.414 -1.558 0.003 H12 T46 47 T46 H13 H13 H 0 1 N N N 0.418 -22.976 5.191 -4.734 -3.131 -0.214 H13 T46 48 T46 H14 H14 H 0 1 N N N 2.572 -22.521 4.384 -5.602 -4.129 1.803 H14 T46 49 T46 H15 H15 H 0 1 N N N 2.551 -21.639 6.386 -3.028 -1.855 1.932 H15 T46 50 T46 H16 H16 H 0 1 N N N 0.817 -20.871 8.117 -2.165 -3.439 0.144 H16 T46 51 T46 H17 H17 H 0 1 N N N 0.342 -20.678 6.396 -2.627 -2.227 -1.076 H17 T46 52 T46 H18 H18 H 0 1 N N N -3.570 -22.784 6.827 -0.165 -0.686 -2.341 H18 T46 53 T46 H19 H19 H 0 1 N N N -2.952 -18.239 10.315 3.452 -2.346 1.634 H19 T46 54 T46 H20 H20 H 0 1 N N N -2.532 -21.616 11.353 5.686 -0.432 0.305 H20 T46 55 T46 H21 H21 H 0 1 N N N -3.165 -23.868 11.981 5.304 0.892 2.366 H21 T46 56 T46 H22 H22 H 0 1 N N N -2.120 -23.428 9.926 5.014 3.244 2.068 H22 T46 57 T46 H23 H23 H 0 1 N N N -5.507 -23.638 10.081 7.303 2.444 2.065 H23 T46 58 T46 H24 H24 H 0 1 N N N -6.000 -25.467 11.843 8.727 0.598 1.542 H24 T46 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T46 O3, C3, SING N N 1 T46 C3, C2, SING N N 2 T46 C3, C4, SING N N 3 T46 O1P P DOUB N N 4 T46 C2, C1, SING N N 5 T46 C4, C5, SING N N 6 T46 C4, O4, SING N N 7 T46 C5, O5, SING N N 8 T46 O5, P SING N N 9 T46 P O2P SING N N 10 T46 P OPP SING N N 11 T46 C1, O4, SING N N 12 T46 C1, N11 SING N N 13 T46 O3P P2 DOUB N N 14 T46 O21 C21 DOUB N N 15 T46 N11 C21 SING N N 16 T46 N11 C61 SING N N 17 T46 OPP P2 SING N N 18 T46 C21 N31 SING N N 19 T46 P2 O1 SING N N 20 T46 P2 O4P SING N N 21 T46 C61 C51 DOUB N N 22 T46 O2 C2 SING N N 23 T46 O1 C1 SING N N 24 T46 N31 C41 SING N N 25 T46 C51 C41 SING N N 26 T46 C51 C5A SING N N 27 T46 C41 O41 DOUB N N 28 T46 C3 C2 SING N N 29 T46 C3 O3 SING N N 30 T46 C3 C4 SING N N 31 T46 C2 C1 SING N N 32 T46 C1 O5 SING N N 33 T46 C4 C5 SING N N 34 T46 C4 O4 DOUB N N 35 T46 O5 C5 SING N N 36 T46 C5 C6 SING N N 37 T46 C5 H1 SING N N 38 T46 C6 H2 SING N N 39 T46 C6 H3 SING N N 40 T46 C6 H4 SING N N 41 T46 N31 H5 SING N N 42 T46 C5A H6 SING N N 43 T46 C5A H7 SING N N 44 T46 C5A H8 SING N N 45 T46 C61 H9 SING N N 46 T46 C1, H10 SING N N 47 T46 C2, H11 SING N N 48 T46 C2, H12 SING N N 49 T46 C3, H13 SING N N 50 T46 O3, H14 SING N N 51 T46 C4, H15 SING N N 52 T46 C5, H16 SING N N 53 T46 C5, H17 SING N N 54 T46 O2P H18 SING N N 55 T46 O4P H19 SING N N 56 T46 C1 H20 SING N N 57 T46 C2 H21 SING N N 58 T46 O2 H22 SING N N 59 T46 C3 H23 SING N N 60 T46 O3 H24 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T46 SMILES ACDLabs 12.01 "O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(=O)C(O)C3O)C)O)O)C" T46 InChI InChI 1.03 "InChI=1S/C16H24N2O15P2/c1-6-4-18(16(24)17-14(6)23)10-3-8(19)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(20)7(2)30-15/h4,7-10,12-13,15,19,21-22H,3,5H2,1-2H3,(H,25,26)(H,27,28)(H,17,23,24)/t7-,8+,9-,10-,12+,13-,15-/m1/s1" T46 InChIKey InChI 1.03 PSXWNITXWWECNY-UCBTUHGZSA-N T46 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](O)C1=O" T46 SMILES CACTVS 3.385 "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)C1=O" T46 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1C(=O)[C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O" T46 SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(=O)C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T46 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,6R)-3,4-dihydroxy-6-methyl-5-oxotetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" T46 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,6R)-6-methyl-3,4-bis(oxidanyl)-5-oxidanylidene-oxan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T46 "Create component" 2014-01-08 RCSB T46 "Initial release" 2014-04-09 RCSB #