data_T6J # _chem_comp.id T6J _chem_comp.name "2-[(methylsulfonyl)methyl]-1H-benzimidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H10 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-16 _chem_comp.pdbx_modified_date 2020-03-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 210.253 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T6J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RFD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T6J N1 N1 N 0 1 Y N N 13.713 -28.116 4.588 -0.616 1.132 -0.535 N1 T6J 1 T6J C4 C1 C 0 1 Y N N 12.337 -25.043 3.297 -3.011 -1.412 0.079 C4 T6J 2 T6J C5 C2 C 0 1 Y N N 11.073 -25.416 2.894 -4.158 -0.750 0.414 C5 T6J 3 T6J C6 C3 C 0 1 Y N N 10.618 -26.755 3.007 -4.189 0.637 0.450 C6 T6J 4 T6J C7 C4 C 0 1 Y N N 11.410 -27.749 3.531 -3.058 1.369 0.161 C7 T6J 5 T6J C8 C5 C 0 1 Y N N 12.697 -27.383 3.957 -1.885 0.714 -0.187 C8 T6J 6 T6J N N2 N 0 1 Y N N 14.458 -25.944 4.401 -0.596 -1.049 -0.592 N T6J 7 T6J C C6 C 0 1 N N N 15.879 -25.605 7.128 4.291 -0.014 -0.435 C T6J 8 T6J O O1 O 0 1 N N N 15.081 -27.884 7.918 2.443 1.192 1.008 O T6J 9 T6J C1 C7 C 0 1 N N N 16.025 -27.589 5.539 1.575 0.018 -1.188 C1 T6J 10 T6J C2 C8 C 0 1 Y N N 14.751 -27.199 4.846 0.127 0.018 -0.773 C2 T6J 11 T6J C3 C9 C 0 1 Y N N 13.167 -26.046 3.846 -1.856 -0.691 -0.232 C3 T6J 12 T6J O1 O2 O 0 1 N N N 17.479 -27.467 7.617 2.428 -1.259 0.955 O1 T6J 13 T6J S S1 S 0 1 N N N 16.130 -27.242 7.222 2.628 -0.020 0.289 S T6J 14 T6J H9 H1 H 0 1 N N N 13.703 -29.091 4.810 -0.312 2.051 -0.601 H9 T6J 15 T6J H5 H2 H 0 1 N N N 12.680 -24.024 3.197 -2.998 -2.492 0.054 H5 T6J 16 T6J H6 H3 H 0 1 N N N 10.411 -24.669 2.481 -5.049 -1.311 0.653 H6 T6J 17 T6J H7 H4 H 0 1 N N N 9.621 -27.000 2.672 -5.104 1.146 0.717 H7 T6J 18 T6J H8 H5 H 0 1 N N N 11.058 -28.767 3.611 -3.088 2.449 0.190 H8 T6J 19 T6J H1 H7 H 0 1 N N N 16.711 -25.137 6.582 5.034 -0.036 0.361 H1 T6J 20 T6J H H8 H 0 1 N N N 14.936 -25.409 6.597 4.413 -0.891 -1.071 H T6J 21 T6J H2 H9 H 0 1 N N N 15.823 -25.184 8.143 4.424 0.888 -1.032 H2 T6J 22 T6J H4 H10 H 0 1 N N N 16.851 -27.062 5.038 1.778 -0.860 -1.801 H4 T6J 23 T6J H3 H11 H 0 1 N N N 16.153 -28.674 5.414 1.788 0.919 -1.763 H3 T6J 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T6J C S SING N N 1 T6J O S DOUB N N 2 T6J S O1 DOUB N N 3 T6J C1 S SING N N 4 T6J C2 C1 SING N N 5 T6J C2 N DOUB Y N 6 T6J N C3 SING Y N 7 T6J C3 C4 SING Y N 8 T6J C4 C5 DOUB Y N 9 T6J C5 C6 SING Y N 10 T6J C6 C7 DOUB Y N 11 T6J C7 C8 SING Y N 12 T6J C3 C8 DOUB Y N 13 T6J C8 N1 SING Y N 14 T6J N1 C2 SING Y N 15 T6J N1 H9 SING N N 16 T6J C4 H5 SING N N 17 T6J C5 H6 SING N N 18 T6J C6 H7 SING N N 19 T6J C7 H8 SING N N 20 T6J C H1 SING N N 21 T6J C H SING N N 22 T6J C H2 SING N N 23 T6J C1 H4 SING N N 24 T6J C1 H3 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T6J SMILES ACDLabs 12.01 "n1c(nc2ccccc12)CS(C)(=O)=O" T6J InChI InChI 1.03 "InChI=1S/C9H10N2O2S/c1-14(12,13)6-9-10-7-4-2-3-5-8(7)11-9/h2-5H,6H2,1H3,(H,10,11)" T6J InChIKey InChI 1.03 WCWTYTQSZZWNEW-UHFFFAOYSA-N T6J SMILES_CANONICAL CACTVS 3.385 "C[S](=O)(=O)Cc1[nH]c2ccccc2n1" T6J SMILES CACTVS 3.385 "C[S](=O)(=O)Cc1[nH]c2ccccc2n1" T6J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)Cc1[nH]c2ccccc2n1" T6J SMILES "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)Cc1[nH]c2ccccc2n1" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T6J "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(methylsulfonyl)methyl]-1H-benzimidazole" T6J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(methylsulfonylmethyl)-1~{H}-benzimidazole" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T6J "Create component" 2020-03-16 RCSB T6J "Initial release" 2020-03-25 RCSB ##