data_TBN # _chem_comp.id TBN _chem_comp.name "'2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H14 N4 O4" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms 7-DEAZAADENOSINE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-06-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.253 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TBN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PR5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TBN "O5'" "O5'" O 0 1 N N N 93.102 65.343 17.035 -4.450 -2.121 0.965 "O5'" TBN 1 TBN "C5'" "C5'" C 0 1 N N N 92.952 64.241 17.949 -4.211 -1.182 -0.085 "C5'" TBN 2 TBN "C4'" "C4'" C 0 1 N N R 93.363 64.633 19.391 -3.116 -0.203 0.345 "C4'" TBN 3 TBN "O4'" "O4'" O 0 1 N N N 93.051 65.998 19.698 -1.854 -0.891 0.484 "O4'" TBN 4 TBN "C1'" "C1'" C 0 1 N N R 91.875 66.056 20.521 -0.847 0.141 0.396 "C1'" TBN 5 TBN N9 N9 N 0 1 Y N N 90.832 66.775 19.722 0.449 -0.440 0.035 N9 TBN 6 TBN C8 C8 C 0 1 Y N N 90.728 68.158 19.565 0.622 -1.645 -0.594 C8 TBN 7 TBN C7 C7 C 0 1 Y N N 89.667 68.478 18.767 1.931 -1.880 -0.776 C7 TBN 8 TBN C5 C5 C 0 1 Y N N 89.092 67.296 18.413 2.647 -0.731 -0.225 C5 TBN 9 TBN C6 C6 C 0 1 Y N N 87.954 67.112 17.581 3.997 -0.369 -0.095 C6 TBN 10 TBN N1 N1 N 0 1 Y N N 87.600 65.790 17.398 4.286 0.790 0.489 N1 TBN 11 TBN C2 C2 C 0 1 Y N N 88.319 64.797 17.991 3.330 1.582 0.941 C2 TBN 12 TBN N3 N3 N 0 1 Y N N 89.413 64.904 18.792 2.053 1.281 0.846 N3 TBN 13 TBN C4 C4 C 0 1 Y N N 89.764 66.227 18.972 1.663 0.141 0.277 C4 TBN 14 TBN N6 N6 N 0 1 N N N 87.263 68.110 17.006 5.001 -1.195 -0.567 N6 TBN 15 TBN "C2'" "C2'" C 0 1 N N R 91.616 64.647 21.089 -1.343 1.086 -0.721 "C2'" TBN 16 TBN "O2'" "O2'" O 0 1 N N N 91.814 64.719 22.502 -1.053 2.448 -0.400 "O2'" TBN 17 TBN "C3'" "C3'" C 0 1 N N S 92.629 63.741 20.397 -2.872 0.851 -0.757 "C3'" TBN 18 TBN "O3'" "O3'" O 0 1 N N N 93.502 63.055 21.310 -3.571 2.061 -0.457 "O3'" TBN 19 TBN "H5'" "H5'" H 0 1 N N N 92.850 65.103 16.151 -5.144 -2.717 0.654 "H5'" TBN 20 TBN "H5'1" "1H5'" H 0 0 N N N 93.510 63.342 17.597 -5.127 -0.632 -0.297 "H5'1" TBN 21 TBN "H5'2" "2H5'" H 0 0 N N N 91.918 63.826 17.920 -3.891 -1.714 -0.981 "H5'2" TBN 22 TBN "H4'" "H4'" H 0 1 N N N 94.468 64.499 19.459 -3.389 0.283 1.281 "H4'" TBN 23 TBN "H1'" "H1'" H 0 1 N N N 91.933 66.658 21.458 -0.771 0.679 1.341 "H1'" TBN 24 TBN H8 H8 H 0 1 N N N 91.402 68.906 20.016 -0.176 -2.308 -0.897 H8 TBN 25 TBN H7 H7 H 0 1 N N N 89.340 69.488 18.468 2.371 -2.748 -1.244 H7 TBN 26 TBN H2 H2 H 0 1 N N N 87.969 63.769 17.797 3.608 2.515 1.408 H2 TBN 27 TBN HN61 1HN6 H 0 0 N N N 87.932 68.666 16.474 5.929 -0.931 -0.475 HN61 TBN 28 TBN HN62 2HN6 H 0 0 N N N 86.447 67.978 16.409 4.776 -2.040 -0.987 HN62 TBN 29 TBN "H2'" "H2'" H 0 1 N N N 90.588 64.254 20.912 -0.893 0.815 -1.676 "H2'" TBN 30 TBN H1 H1 H 0 1 N N N 91.654 63.850 22.852 -1.439 2.989 -1.102 H1 TBN 31 TBN "H3'" "H3'" H 0 1 N N N 92.120 62.897 19.876 -3.177 0.466 -1.730 "H3'" TBN 32 TBN H3 H3 H 0 1 N N N 93.047 62.502 21.934 -4.513 1.840 -0.433 H3 TBN 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TBN "O5'" "C5'" SING N N 1 TBN "O5'" "H5'" SING N N 2 TBN "C5'" "C4'" SING N N 3 TBN "C5'" "H5'1" SING N N 4 TBN "C5'" "H5'2" SING N N 5 TBN "C4'" "O4'" SING N N 6 TBN "C4'" "C3'" SING N N 7 TBN "C4'" "H4'" SING N N 8 TBN "O4'" "C1'" SING N N 9 TBN "C1'" N9 SING N N 10 TBN "C1'" "C2'" SING N N 11 TBN "C1'" "H1'" SING N N 12 TBN N9 C8 SING Y N 13 TBN N9 C4 SING Y N 14 TBN C8 C7 DOUB Y N 15 TBN C8 H8 SING N N 16 TBN C7 C5 SING Y N 17 TBN C7 H7 SING N N 18 TBN C5 C6 DOUB Y N 19 TBN C5 C4 SING Y N 20 TBN C6 N1 SING Y N 21 TBN C6 N6 SING N N 22 TBN N1 C2 DOUB Y N 23 TBN C2 N3 SING Y N 24 TBN C2 H2 SING N N 25 TBN N3 C4 DOUB Y N 26 TBN N6 HN61 SING N N 27 TBN N6 HN62 SING N N 28 TBN "C2'" "O2'" SING N N 29 TBN "C2'" "C3'" SING N N 30 TBN "C2'" "H2'" SING N N 31 TBN "O2'" H1 SING N N 32 TBN "C3'" "O3'" SING N N 33 TBN "C3'" "H3'" SING N N 34 TBN "O3'" H3 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TBN SMILES ACDLabs 10.04 "OCC3OC(n2ccc1c(ncnc12)N)C(O)C3O" TBN SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(ccc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" TBN SMILES CACTVS 3.341 "Nc1ncnc2n(ccc12)[CH]3O[CH](CO)[CH](O)[CH]3O" TBN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cn(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O" TBN SMILES "OpenEye OEToolkits" 1.5.0 "c1cn(c2c1c(ncn2)N)C3C(C(C(O3)CO)O)O" TBN InChI InChI 1.03 "InChI=1S/C11H14N4O4/c12-9-5-1-2-15(10(5)14-4-13-9)11-8(18)7(17)6(3-16)19-11/h1-2,4,6-8,11,16-18H,3H2,(H2,12,13,14)/t6-,7-,8-,11-/m1/s1" TBN InChIKey InChI 1.03 HDZZVAMISRMYHH-KCGFPETGSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TBN "SYSTEMATIC NAME" ACDLabs 10.04 "7-beta-D-ribofuranosyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine" TBN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R)-2-(4-aminopyrrolo[2,3-d]pyrimidin-7-yl)-5-(hydroxymethyl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TBN "Create component" 2003-06-23 PDBJ TBN "Modify descriptor" 2011-06-04 RCSB TBN "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TBN _pdbx_chem_comp_synonyms.name 7-DEAZAADENOSINE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##