data_TBZ # _chem_comp.id TBZ _chem_comp.name "2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)-2,5',2',5''-TRI-BENZIMIDAZOLE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C32 H29 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "TRIBIZ; TRIS(BENZIMIDAZOLE) DERIVATIVE" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.626 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TBZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 263D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TBZ N1 N1 N 1 1 N N N 12.502 16.641 82.250 -11.702 -2.029 1.673 N1 TBZ 1 TBZ C1 C1 C 0 1 N N S 11.304 16.819 83.123 -11.663 -0.925 0.706 C1 TBZ 2 TBZ C2 C2 C 0 1 N N N 10.047 16.874 82.233 -10.380 -0.995 -0.162 C2 TBZ 3 TBZ N2 N2 N 0 1 N N N 10.218 18.153 81.666 -10.192 0.409 -0.605 N2 TBZ 4 TBZ C3 C3 C 0 1 N N N 9.872 18.854 82.831 -10.544 1.251 0.559 C3 TBZ 5 TBZ C4 C4 C 0 1 N N N 11.160 18.261 83.656 -11.515 0.433 1.431 C4 TBZ 6 TBZ C5 C5 C 0 1 Y N N 9.648 18.551 80.583 -8.822 0.581 -0.826 C5 TBZ 7 TBZ C6 C6 C 0 1 Y N N 10.312 19.357 79.627 -7.912 0.156 0.128 C6 TBZ 8 TBZ C7 C7 C 0 1 Y N N 9.472 19.887 78.650 -6.554 0.328 -0.095 C7 TBZ 9 TBZ C8 C8 C 0 1 Y N N 8.102 19.539 78.699 -6.109 0.931 -1.286 C8 TBZ 10 TBZ C9 C9 C 0 1 Y N N 7.572 18.693 79.637 -7.045 1.352 -2.236 C9 TBZ 11 TBZ C10 C10 C 0 1 Y N N 8.355 18.168 80.584 -8.379 1.178 -2.005 C10 TBZ 12 TBZ N3 N3 N 0 1 Y N N 9.552 20.744 77.569 -5.418 0.025 0.632 N3 TBZ 13 TBZ C11 C11 C 0 1 Y N N 8.258 20.893 77.031 -4.341 0.438 -0.109 C11 TBZ 14 TBZ N4 N4 N 0 1 Y N N 7.404 20.200 77.710 -4.755 0.973 -1.232 N4 TBZ 15 TBZ C12 C12 C 0 1 Y N N 7.805 21.603 75.999 -2.928 0.305 0.299 C12 TBZ 16 TBZ C13 C13 C 0 1 Y N N 8.663 22.006 75.020 -1.963 -0.050 -0.642 C13 TBZ 17 TBZ C14 C14 C 0 1 Y N N 8.188 22.763 73.961 -0.640 -0.172 -0.253 C14 TBZ 18 TBZ C15 C15 C 0 1 Y N N 6.878 23.144 73.847 -0.277 0.061 1.088 C15 TBZ 19 TBZ C16 C16 C 0 1 Y N N 6.000 22.690 74.876 -1.260 0.416 2.020 C16 TBZ 20 TBZ C17 C17 C 0 1 Y N N 6.459 21.909 75.965 -2.560 0.535 1.630 C17 TBZ 21 TBZ N5 N5 N 0 1 Y N N 8.808 23.247 72.913 0.527 -0.499 -0.917 N5 TBZ 22 TBZ C18 C18 C 0 1 Y N N 7.951 23.953 72.140 1.539 -0.458 0.005 C18 TBZ 23 TBZ N6 N6 N 0 1 Y N N 6.767 23.949 72.693 1.054 -0.133 1.180 N6 TBZ 24 TBZ C19 C19 C 0 1 Y N N 8.360 24.539 70.979 2.960 -0.742 -0.280 C19 TBZ 25 TBZ C20 C20 C 0 1 Y N N 9.570 24.224 70.318 3.956 0.030 0.316 C20 TBZ 26 TBZ C21 C21 C 0 1 Y N N 9.897 24.926 69.128 5.286 -0.243 0.044 C21 TBZ 27 TBZ C22 C22 C 0 1 Y N N 9.021 25.925 68.654 5.625 -1.294 -0.829 C22 TBZ 28 TBZ C23 C23 C 0 1 Y N N 7.821 26.181 69.341 4.611 -2.059 -1.418 C23 TBZ 29 TBZ C24 C24 C 0 1 Y N N 7.466 25.492 70.509 3.304 -1.786 -1.148 C24 TBZ 30 TBZ N7 N7 N 0 1 Y N N 10.922 24.912 68.236 6.481 0.316 0.458 N7 TBZ 31 TBZ C25 C25 C 0 1 Y N N 10.664 25.885 67.256 7.485 -0.386 -0.154 C25 TBZ 32 TBZ N8 N8 N 0 1 Y N N 9.531 26.521 67.510 6.971 -1.325 -0.912 N8 TBZ 33 TBZ C26 C26 C 0 1 Y N N 11.470 26.140 66.166 8.929 -0.121 0.010 C26 TBZ 34 TBZ C27 C27 C 0 1 Y N N 12.563 25.311 66.000 9.398 1.193 0.070 C27 TBZ 35 TBZ C28 C28 C 0 1 Y N N 13.329 25.420 64.828 10.745 1.436 0.228 C28 TBZ 36 TBZ C29 C29 C 0 1 Y N N 12.988 26.372 63.821 11.638 0.375 0.316 C29 TBZ 37 TBZ C30 C30 C 0 1 Y N N 11.903 27.281 64.043 11.176 -0.934 0.256 C30 TBZ 38 TBZ C31 C31 C 0 1 Y N N 11.146 27.147 65.231 9.829 -1.185 0.104 C31 TBZ 39 TBZ O1 O1 O 0 1 N N N 13.700 26.320 62.606 12.965 0.618 0.466 O1 TBZ 40 TBZ C32 C32 C 0 1 N N N 13.735 25.108 61.796 13.125 2.038 0.493 C32 TBZ 41 TBZ HN11 1HN1 H 0 0 N N N 13.333 16.604 82.839 -12.501 -1.917 2.279 HN11 TBZ 42 TBZ HN12 2HN1 H 0 0 N N N 12.421 15.829 81.638 -11.774 -2.906 1.180 HN12 TBZ 43 TBZ HN13 3HN1 H 0 0 N N N 12.567 17.357 81.526 -10.857 -2.023 2.225 HN13 TBZ 44 TBZ H1 H1 H 0 1 N N N 11.404 16.018 83.892 -12.554 -0.931 0.078 H1 TBZ 45 TBZ H21 1H2 H 0 1 N N N 9.920 16.032 81.512 -10.531 -1.652 -1.018 H21 TBZ 46 TBZ H22 2H2 H 0 1 N N N 9.074 16.693 82.747 -9.531 -1.328 0.435 H22 TBZ 47 TBZ H31A 1H3 H 0 0 N N N 9.729 19.958 82.773 -9.646 1.490 1.129 H31A TBZ 48 TBZ H32 2H3 H 0 1 N N N 8.850 18.720 83.257 -11.029 2.167 0.223 H32 TBZ 49 TBZ H41 1H4 H 0 1 N N N 11.070 18.335 84.764 -11.097 0.286 2.427 H41 TBZ 50 TBZ H42 2H4 H 0 1 N N N 12.084 18.877 83.570 -12.480 0.935 1.495 H42 TBZ 51 TBZ H6 H6 H 0 1 N N N 11.396 19.556 79.642 -8.258 -0.307 1.041 H6 TBZ 52 TBZ H9 H9 H 0 1 N N N 6.500 18.431 79.629 -6.712 1.816 -3.153 H9 TBZ 53 TBZ H10 H10 H 0 1 N N N 7.955 17.456 81.326 -9.097 1.505 -2.742 H10 TBZ 54 TBZ HN3 HN3 H 0 1 N N N 10.407 21.184 77.230 -5.388 -0.399 1.503 HN3 TBZ 55 TBZ H13 H13 H 0 1 N N N 9.727 21.723 75.083 -2.245 -0.227 -1.670 H13 TBZ 56 TBZ H16 H16 H 0 1 N N N 4.929 22.951 74.828 -0.987 0.597 3.049 H16 TBZ 57 TBZ H17 H17 H 0 1 N N N 5.787 21.549 76.763 -3.313 0.810 2.354 H17 TBZ 58 TBZ HN5 HN5 H 0 1 N N N 9.800 23.097 72.728 0.614 -0.716 -1.859 HN5 TBZ 59 TBZ H20 H20 H 0 1 N N N 10.243 23.448 70.721 3.692 0.835 0.986 H20 TBZ 60 TBZ H23 H23 H 0 1 N N N 7.133 26.949 68.949 4.866 -2.867 -2.088 H23 TBZ 61 TBZ H24 H24 H 0 1 N N N 6.519 25.692 71.038 2.527 -2.380 -1.605 H24 TBZ 62 TBZ HN7 HN7 H 0 1 N N N 11.729 24.291 68.291 6.589 1.064 1.066 HN7 TBZ 63 TBZ H27 H27 H 0 1 N N N 12.818 24.579 66.784 8.704 2.018 -0.002 H27 TBZ 64 TBZ H28 H28 H 0 1 N N N 14.200 24.756 64.698 11.108 2.452 0.275 H28 TBZ 65 TBZ H30 H30 H 0 1 N N N 11.655 28.069 63.312 11.873 -1.756 0.328 H30 TBZ 66 TBZ H31 H31 H 0 1 N N N 10.301 27.828 65.428 9.471 -2.202 0.057 H31 TBZ 67 TBZ H321 1H32 H 0 0 N N N 14.298 25.066 60.834 14.180 2.283 0.613 H321 TBZ 68 TBZ H322 2H32 H 0 0 N N N 14.096 24.273 62.441 12.757 2.463 -0.441 H322 TBZ 69 TBZ H323 3H32 H 0 0 N N N 12.682 24.801 61.590 12.559 2.452 1.328 H323 TBZ 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TBZ N1 C1 SING N N 1 TBZ N1 HN11 SING N N 2 TBZ N1 HN12 SING N N 3 TBZ N1 HN13 SING N N 4 TBZ C1 C2 SING N N 5 TBZ C1 C4 SING N N 6 TBZ C1 H1 SING N N 7 TBZ C2 N2 SING N N 8 TBZ C2 H21 SING N N 9 TBZ C2 H22 SING N N 10 TBZ N2 C3 SING N N 11 TBZ N2 C5 SING N N 12 TBZ C3 C4 SING N N 13 TBZ C3 H31A SING N N 14 TBZ C3 H32 SING N N 15 TBZ C4 H41 SING N N 16 TBZ C4 H42 SING N N 17 TBZ C5 C6 DOUB Y N 18 TBZ C5 C10 SING Y N 19 TBZ C6 C7 SING Y N 20 TBZ C6 H6 SING N N 21 TBZ C7 C8 DOUB Y N 22 TBZ C7 N3 SING Y N 23 TBZ C8 C9 SING Y N 24 TBZ C8 N4 SING Y N 25 TBZ C9 C10 DOUB Y N 26 TBZ C9 H9 SING N N 27 TBZ C10 H10 SING N N 28 TBZ N3 C11 SING Y N 29 TBZ N3 HN3 SING N N 30 TBZ C11 N4 DOUB Y N 31 TBZ C11 C12 SING Y N 32 TBZ C12 C13 DOUB Y N 33 TBZ C12 C17 SING Y N 34 TBZ C13 C14 SING Y N 35 TBZ C13 H13 SING N N 36 TBZ C14 C15 DOUB Y N 37 TBZ C14 N5 SING Y N 38 TBZ C15 C16 SING Y N 39 TBZ C15 N6 SING Y N 40 TBZ C16 C17 DOUB Y N 41 TBZ C16 H16 SING N N 42 TBZ C17 H17 SING N N 43 TBZ N5 C18 SING Y N 44 TBZ N5 HN5 SING N N 45 TBZ C18 N6 DOUB Y N 46 TBZ C18 C19 SING Y N 47 TBZ C19 C20 DOUB Y N 48 TBZ C19 C24 SING Y N 49 TBZ C20 C21 SING Y N 50 TBZ C20 H20 SING N N 51 TBZ C21 C22 DOUB Y N 52 TBZ C21 N7 SING Y N 53 TBZ C22 C23 SING Y N 54 TBZ C22 N8 SING Y N 55 TBZ C23 C24 DOUB Y N 56 TBZ C23 H23 SING N N 57 TBZ C24 H24 SING N N 58 TBZ N7 C25 SING Y N 59 TBZ N7 HN7 SING N N 60 TBZ C25 N8 DOUB Y N 61 TBZ C25 C26 SING Y N 62 TBZ C26 C27 SING Y N 63 TBZ C26 C31 DOUB Y N 64 TBZ C27 C28 DOUB Y N 65 TBZ C27 H27 SING N N 66 TBZ C28 C29 SING Y N 67 TBZ C28 H28 SING N N 68 TBZ C29 C30 DOUB Y N 69 TBZ C29 O1 SING N N 70 TBZ C30 C31 SING Y N 71 TBZ C30 H30 SING N N 72 TBZ C31 H31 SING N N 73 TBZ O1 C32 SING N N 74 TBZ C32 H321 SING N N 75 TBZ C32 H322 SING N N 76 TBZ C32 H323 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TBZ SMILES ACDLabs 10.04 "O(c1ccc(cc1)c3nc2ccc(cc2n3)c5nc4ccc(cc4n5)c6nc7c(n6)cc(cc7)N8CCC(C8)[NH3+])C" TBZ SMILES_CANONICAL CACTVS 3.341 "COc1ccc(cc1)c2[nH]c3cc(ccc3n2)c4[nH]c5cc(ccc5n4)c6[nH]c7cc(ccc7n6)N8CC[C@H]([NH3+])C8" TBZ SMILES CACTVS 3.341 "COc1ccc(cc1)c2[nH]c3cc(ccc3n2)c4[nH]c5cc(ccc5n4)c6[nH]c7cc(ccc7n6)N8CC[CH]([NH3+])C8" TBZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COc1ccc(cc1)c2[nH]c3cc(ccc3n2)c4[nH]c5cc(ccc5n4)c6[nH]c7cc(ccc7n6)[N@]8CC[C@@H](C8)[NH3+]" TBZ SMILES "OpenEye OEToolkits" 1.5.0 "COc1ccc(cc1)c2[nH]c3cc(ccc3n2)c4[nH]c5cc(ccc5n4)c6[nH]c7cc(ccc7n6)N8CCC(C8)[NH3+]" TBZ InChI InChI 1.03 "InChI=1S/C32H28N8O/c1-41-23-7-2-18(3-8-23)30-34-24-9-4-19(14-27(24)37-30)31-35-25-10-5-20(15-28(25)38-31)32-36-26-11-6-22(16-29(26)39-32)40-13-12-21(33)17-40/h2-11,14-16,21H,12-13,17,33H2,1H3,(H,34,37)(H,35,38)(H,36,39)/p+1/t21-/m0/s1" TBZ InChIKey InChI 1.03 MEDNUDGNJOXVKL-NRFANRHFSA-O # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TBZ "SYSTEMATIC NAME" ACDLabs 10.04 "(3S)-1-[2''-(4-methoxyphenyl)-1H,3'H,3''H-2,5':2',5''-terbenzimidazol-6-yl]pyrrolidin-3-aminium" TBZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1S,3S)-1-[2-[2-[2-(4-methoxyphenyl)-3H-benzimidazol-5-yl]-3H-benzimidazol-5-yl]-3H-benzimidazol-5-yl]pyrrolidin-3-yl]azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TBZ "Create component" 1999-07-08 RCSB TBZ "Modify aromatic_flag" 2011-06-04 RCSB TBZ "Modify descriptor" 2011-06-04 RCSB TBZ "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TBZ TRIBIZ ? ? 2 TBZ "TRIS(BENZIMIDAZOLE) DERIVATIVE" ? ? ##