data_TCP # _chem_comp.id TCP _chem_comp.name "5'-METHYLTHYMIDINE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N2 O5" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 256.255 _chem_comp.one_letter_code T _chem_comp.three_letter_code TCP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AC3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TCP CP CP C 0 1 N N N -3.019 9.245 21.282 2.582 -0.038 -4.606 CP TCP 1 TCP "O5'" O5* O 0 1 N N N -3.900 8.155 21.440 1.695 -0.714 -3.712 "O5'" TCP 2 TCP "C5'" C5* C 0 1 N N N -5.264 8.435 21.220 0.632 0.194 -3.420 "C5'" TCP 3 TCP "C4'" C4* C 0 1 N N R -6.047 7.166 20.895 -0.357 -0.470 -2.461 "C4'" TCP 4 TCP "O4'" O4* O 0 1 N N N -5.304 6.379 19.991 0.275 -0.759 -1.197 "O4'" TCP 5 TCP "C3'" C3* C 0 1 N N S -6.298 6.301 22.127 -1.495 0.511 -2.084 "C3'" TCP 6 TCP "O3'" O3* O 0 1 N N N -7.579 6.578 22.648 -2.553 0.469 -3.043 "O3'" TCP 7 TCP "C2'" C2* C 0 1 N N N -6.118 4.887 21.583 -1.965 -0.048 -0.717 "C2'" TCP 8 TCP "C1'" C1* C 0 1 N N R -5.751 5.047 20.111 -0.773 -0.889 -0.222 "C1'" TCP 9 TCP N1 N1 N 0 1 N N N -4.702 4.101 19.685 -0.311 -0.390 1.075 N1 TCP 10 TCP C2 C2 C 0 1 N N N -5.048 3.006 18.914 0.115 0.880 1.186 C2 TCP 11 TCP O2 O2 O 0 1 N N N -6.207 2.730 18.615 0.109 1.602 0.208 O2 TCP 12 TCP N3 N3 N 0 1 N N N -4.006 2.195 18.486 0.540 1.366 2.367 N3 TCP 13 TCP C4 C4 C 0 1 N N N -2.666 2.382 18.798 0.553 0.579 3.461 C4 TCP 14 TCP O4 O4 O 0 1 N N N -1.806 1.637 18.333 0.941 1.016 4.529 O4 TCP 15 TCP C5 C5 C 0 1 N N N -2.406 3.485 19.693 0.110 -0.761 3.357 C5 TCP 16 TCP C5M C5M C 0 1 N N N -1.011 3.681 20.237 0.115 -1.663 4.565 C5M TCP 17 TCP C6 C6 C 0 1 N N N -3.414 4.287 20.096 -0.314 -1.222 2.161 C6 TCP 18 TCP HP1 1HP H 0 1 N N N -3.373 10.093 21.868 2.963 0.863 -4.128 HP1 TCP 19 TCP HP2 2HP H 0 1 N N N -2.038 8.958 21.663 3.414 -0.695 -4.859 HP2 TCP 20 TCP HP3 3HP H 0 1 N N N -3.342 10.092 21.929 2.044 0.231 -5.515 HP3 TCP 21 TCP "H5'" 1H5* H 0 1 N N N -5.685 8.932 22.094 1.038 1.093 -2.957 "H5'" TCP 22 TCP "H5''" 2H5* H 0 0 N N N -5.392 9.094 20.362 0.119 0.461 -4.344 "H5''" TCP 23 TCP "H4'" H4* H 0 1 N N N -6.994 7.421 20.421 -0.766 -1.379 -2.903 "H4'" TCP 24 TCP "H3'" H3* H 0 1 N N N -5.530 6.496 22.876 -1.110 1.526 -1.977 "H3'" TCP 25 TCP "HO3'" *HO3 H 0 0 N Y N -7.735 6.039 23.414 -3.263 1.030 -2.702 "HO3'" TCP 26 TCP "H2'" 1H2* H 0 1 N N N -5.330 4.389 22.148 -2.847 -0.676 -0.848 "H2'" TCP 27 TCP "H2''" 2H2* H 0 0 N N N -7.026 4.285 21.632 -2.174 0.764 -0.021 "H2''" TCP 28 TCP "H1'" H1* H 0 1 N N N -6.653 4.971 19.504 -1.068 -1.935 -0.133 "H1'" TCP 29 TCP HN3 HN3 H 0 1 N N N -4.243 1.385 17.932 0.841 2.286 2.430 HN3 TCP 30 TCP H71 1H5M H 0 1 N N N -0.880 4.676 20.663 0.490 -1.112 5.427 H71 TCP 31 TCP H72 2H5M H 0 1 N N N -0.829 2.942 21.017 -0.899 -2.006 4.766 H72 TCP 32 TCP H73 3H5M H 0 1 N N N -0.271 3.546 19.448 0.758 -2.522 4.374 H73 TCP 33 TCP H6 H6 H 0 1 N N N -3.198 5.106 20.767 -0.656 -2.242 2.063 H6 TCP 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TCP CP "O5'" SING N N 1 TCP CP HP1 SING N N 2 TCP CP HP2 SING N N 3 TCP CP HP3 SING N N 4 TCP "O5'" "C5'" SING N N 5 TCP "C5'" "C4'" SING N N 6 TCP "C5'" "H5'" SING N N 7 TCP "C5'" "H5''" SING N N 8 TCP "C4'" "O4'" SING N N 9 TCP "C4'" "C3'" SING N N 10 TCP "C4'" "H4'" SING N N 11 TCP "O4'" "C1'" SING N N 12 TCP "C3'" "O3'" SING N N 13 TCP "C3'" "C2'" SING N N 14 TCP "C3'" "H3'" SING N N 15 TCP "O3'" "HO3'" SING N N 16 TCP "C2'" "C1'" SING N N 17 TCP "C2'" "H2'" SING N N 18 TCP "C2'" "H2''" SING N N 19 TCP "C1'" N1 SING N N 20 TCP "C1'" "H1'" SING N N 21 TCP N1 C2 SING N N 22 TCP N1 C6 SING N N 23 TCP C2 O2 DOUB N N 24 TCP C2 N3 SING N N 25 TCP N3 C4 SING N N 26 TCP N3 HN3 SING N N 27 TCP C4 O4 DOUB N N 28 TCP C4 C5 SING N N 29 TCP C5 C5M SING N N 30 TCP C5 C6 DOUB N N 31 TCP C5M H71 SING N N 32 TCP C5M H72 SING N N 33 TCP C5M H73 SING N N 34 TCP C6 H6 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TCP SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2)COC" TCP SMILES_CANONICAL CACTVS 3.341 "COC[C@H]1O[C@H](C[C@@H]1O)N2C=C(C)C(=O)NC2=O" TCP SMILES CACTVS 3.341 "COC[CH]1O[CH](C[CH]1O)N2C=C(C)C(=O)NC2=O" TCP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COC)O" TCP SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COC)O" TCP InChI InChI 1.03 "InChI=1S/C11H16N2O5/c1-6-4-13(11(16)12-10(6)15)9-3-7(14)8(18-9)5-17-2/h4,7-9,14H,3,5H2,1-2H3,(H,12,15,16)/t7-,8+,9+/m0/s1" TCP InChIKey InChI 1.03 KTCKNHCDUKONFQ-DJLDLDEBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TCP "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-methylthymidine" TCP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,4S,5R)-4-hydroxy-5-(methoxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TCP "Create component" 1999-07-08 RCSB TCP "Modify descriptor" 2011-06-04 RCSB #