data_TD2 # _chem_comp.id TD2 _chem_comp.name "3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H30 F2 N6 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-03-11 _chem_comp.pdbx_modified_date 2016-04-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 648.635 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Y24 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TD2 C1 C1 C 0 1 N N S 23.141 -0.734 -17.728 -1.414 -1.356 0.123 C1 TD2 1 TD2 C2 C2 C 0 1 N N R 23.448 -2.081 -17.117 -2.693 -0.549 0.360 C2 TD2 2 TD2 C3 C3 C 0 1 N N S 22.612 -3.174 -17.669 -3.890 -1.504 0.402 C3 TD2 3 TD2 C4 C4 C 0 1 N N R 21.197 -2.903 -17.747 -3.940 -2.301 -0.905 C4 TD2 4 TD2 C5 C5 C 0 1 N N R 20.932 -1.570 -18.371 -2.612 -3.040 -1.093 C5 TD2 5 TD2 C6 C6 C 0 1 N N N 19.511 -1.278 -18.244 -2.631 -3.791 -2.426 C6 TD2 6 TD2 N9 N1 N 0 1 Y N N 23.246 -6.484 -16.828 -7.080 -0.199 1.158 N9 TD2 7 TD2 C12 C7 C 0 1 Y N N 22.511 7.820 -13.379 7.360 2.076 -0.083 C12 TD2 8 TD2 C13 C8 C 0 1 Y N N 21.404 8.388 -12.832 8.654 2.276 -0.558 C13 TD2 9 TD2 C14 C9 C 0 1 Y N N 21.494 9.129 -11.619 9.330 3.440 -0.244 C14 TD2 10 TD2 C11 C10 C 0 1 N N S 23.300 2.083 -17.606 1.415 -1.356 -0.122 C11 TD2 11 TD2 S1 S1 S 0 1 N N N 23.938 0.604 -16.933 0.000 -0.227 0.001 S1 TD2 12 TD2 O5 O1 O 0 1 N N N 21.715 -0.508 -17.761 -1.539 -2.097 -1.092 O5 TD2 13 TD2 O51 O2 O 0 1 N N N 24.288 2.507 -18.602 1.539 -2.097 1.093 O51 TD2 14 TD2 C51 C11 C 0 1 N N R 23.961 3.745 -19.253 2.613 -3.040 1.094 C51 TD2 15 TD2 C61 C12 C 0 1 N N N 25.044 3.998 -20.228 2.632 -3.791 2.427 C61 TD2 16 TD2 O6 O3 O 0 1 N N N 19.195 -0.005 -18.566 -1.442 -4.573 -2.549 O6 TD2 17 TD2 O61 O4 O 0 1 N N N 24.688 3.388 -21.419 1.442 -4.573 2.550 O61 TD2 18 TD2 C41 C13 C 0 1 N N R 23.790 4.879 -18.299 3.940 -2.301 0.906 C41 TD2 19 TD2 O4 O5 O 0 1 N N N 20.731 -2.933 -16.447 -4.148 -1.408 -2.001 O4 TD2 20 TD2 O41 O6 O 0 1 N N N 25.039 5.211 -17.694 4.149 -1.408 2.002 O41 TD2 21 TD2 C31 C14 C 0 1 N N S 22.891 4.500 -17.205 3.890 -1.503 -0.401 C31 TD2 22 TD2 C21 C15 C 0 1 N N R 22.993 3.139 -16.609 2.694 -0.549 -0.359 C21 TD2 23 TD2 O2 O7 O 0 1 N N N 21.695 2.795 -16.146 2.595 0.148 -1.603 O2 TD2 24 TD2 O21 O8 O 0 1 N N N 24.793 -2.392 -17.244 -2.593 0.149 1.603 O21 TD2 25 TD2 N7 N2 N 0 1 Y N N 22.551 5.603 -16.289 5.127 -0.733 -0.553 N7 TD2 26 TD2 C8 C16 C 0 1 Y N N 23.122 5.926 -15.094 5.367 0.487 -0.022 C8 TD2 27 TD2 C9 C17 C 0 1 Y N N 22.396 7.024 -14.650 6.631 0.825 -0.411 C9 TD2 28 TD2 N10 N3 N 0 1 Y N N 21.478 7.234 -15.580 7.084 -0.203 -1.151 N10 TD2 29 TD2 N11 N4 N 0 1 Y N N 21.617 6.383 -16.512 6.169 -1.105 -1.208 N11 TD2 30 TD2 N71 N5 N 0 1 Y N N 22.824 -4.423 -16.963 -5.127 -0.733 0.554 N71 TD2 31 TD2 N8 N6 N 0 1 Y N N 23.085 -5.514 -17.609 -6.164 -1.099 1.221 N8 TD2 32 TD2 C10 C18 C 0 1 Y N N 23.125 -6.094 -15.578 -6.632 0.824 0.409 C10 TD2 33 TD2 C71 C19 C 0 1 Y N N 22.844 -4.685 -15.681 -5.370 0.484 0.016 C71 TD2 34 TD2 C15 C20 C 0 1 Y N N 22.736 9.240 -10.976 8.722 4.406 0.541 C15 TD2 35 TD2 C16 C21 C 0 1 Y N N 23.811 8.659 -11.530 7.438 4.211 1.014 C16 TD2 36 TD2 C17 C22 C 0 1 Y N N 23.724 7.925 -12.746 6.754 3.052 0.706 C17 TD2 37 TD2 C22 C23 C 0 1 Y N N 23.288 -7.042 -14.392 -7.363 2.072 0.076 C22 TD2 38 TD2 C23 C24 C 0 1 Y N N 23.917 -8.272 -14.632 -6.762 3.042 -0.723 C23 TD2 39 TD2 C24 C25 C 0 1 Y N N 24.109 -9.204 -13.618 -7.445 4.202 -1.031 C24 TD2 40 TD2 C25 C26 C 0 1 Y N N 23.690 -8.909 -12.369 -8.726 4.402 -0.548 C25 TD2 41 TD2 C26 C27 C 0 1 Y N N 23.092 -7.709 -12.124 -9.329 3.441 0.247 C26 TD2 42 TD2 C27 C28 C 0 1 Y N N 22.903 -6.758 -13.152 -8.655 2.275 0.556 C27 TD2 43 TD2 F18 F1 F 0 1 N N N 20.471 9.700 -11.038 10.586 3.636 -0.703 F18 TD2 44 TD2 F28 F2 F 0 1 N N N 22.660 -7.441 -10.891 -10.580 3.643 0.717 F28 TD2 45 TD2 H1 H1 H 0 1 N N N 23.525 -0.733 -18.759 -1.259 -2.044 0.954 H1 TD2 46 TD2 H2 H2 H 0 1 N N N 23.212 -2.004 -16.045 -2.827 0.168 -0.450 H2 TD2 47 TD2 H3 H3 H 0 1 N N N 22.959 -3.334 -18.700 -3.781 -2.188 1.244 H3 TD2 48 TD2 H4 H4 H 0 1 N N N 20.706 -3.681 -18.350 -4.756 -3.021 -0.861 H4 TD2 49 TD2 H5 H5 H 0 1 N N N 21.188 -1.632 -19.439 -2.473 -3.750 -0.278 H5 TD2 50 TD2 H6 H6 H 0 1 N N N 19.209 -1.459 -17.202 -3.502 -4.446 -2.462 H6 TD2 51 TD2 H7 H7 H 0 1 N N N 18.955 -1.955 -18.910 -2.682 -3.075 -3.246 H7 TD2 52 TD2 H8 H8 H 0 1 N N N 20.448 8.276 -13.321 9.129 1.523 -1.169 H8 TD2 53 TD2 H9 H9 H 0 1 N N N 22.370 1.802 -18.121 1.260 -2.044 -0.953 H9 TD2 54 TD2 H10 H10 H 0 1 N N N 23.019 3.618 -19.807 2.474 -3.750 0.279 H10 TD2 55 TD2 H11 H11 H 0 1 N N N 25.989 3.574 -19.857 3.502 -4.446 2.463 H11 TD2 56 TD2 H12 H12 H 0 1 N N N 25.164 5.080 -20.382 2.682 -3.074 3.247 H12 TD2 57 TD2 H13 H13 H 0 1 N N N 18.259 0.125 -18.464 -1.386 -5.077 -3.373 H13 TD2 58 TD2 H14 H14 H 0 1 N N N 25.368 3.535 -22.066 1.386 -5.077 3.374 H14 TD2 59 TD2 H15 H15 H 0 1 N N N 23.380 5.749 -18.834 4.756 -3.022 0.863 H15 TD2 60 TD2 H16 H16 H 0 1 N N N 20.907 -3.785 -16.067 -4.190 -1.845 -2.862 H16 TD2 61 TD2 H17 H17 H 0 1 N N N 24.916 5.934 -17.090 4.186 -1.845 2.864 H17 TD2 62 TD2 H18 H18 H 0 1 N N N 21.943 4.401 -17.754 3.781 -2.188 -1.242 H18 TD2 63 TD2 H19 H19 H 0 1 N N N 23.731 3.128 -15.793 2.828 0.168 0.451 H19 TD2 64 TD2 H20 H20 H 0 1 N N N 21.413 3.426 -15.495 1.854 0.768 -1.648 H20 TD2 65 TD2 H21 H21 H 0 1 N N N 24.960 -3.242 -16.853 -1.853 0.770 1.648 H21 TD2 66 TD2 H22 H22 H 0 1 N N N 23.951 5.438 -14.603 4.696 1.075 0.586 H22 TD2 67 TD2 H23 H23 H 0 1 N N N 22.683 -3.990 -14.870 -4.702 1.068 -0.599 H23 TD2 68 TD2 H24 H24 H 0 1 N N N 22.825 9.785 -10.048 9.253 5.315 0.784 H24 TD2 69 TD2 H25 H25 H 0 1 N N N 24.769 8.751 -11.040 6.968 4.967 1.625 H25 TD2 70 TD2 H26 H26 H 0 1 N N N 24.602 7.456 -13.166 5.751 2.901 1.077 H26 TD2 71 TD2 H27 H27 H 0 1 N N N 24.261 -8.501 -15.630 -5.762 2.888 -1.101 H27 TD2 72 TD2 H28 H28 H 0 1 N N N 24.586 -10.150 -13.827 -6.979 4.954 -1.650 H28 TD2 73 TD2 H29 H29 H 0 1 N N N 23.828 -9.620 -11.568 -9.256 5.311 -0.791 H29 TD2 74 TD2 H30 H30 H 0 1 N N N 22.447 -5.804 -12.931 -9.127 1.524 1.173 H30 TD2 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TD2 O61 C61 SING N N 1 TD2 C61 C51 SING N N 2 TD2 C51 O51 SING N N 3 TD2 C51 C41 SING N N 4 TD2 O51 C11 SING N N 5 TD2 O6 C6 SING N N 6 TD2 C5 C6 SING N N 7 TD2 C5 O5 SING N N 8 TD2 C5 C4 SING N N 9 TD2 C41 O41 SING N N 10 TD2 C41 C31 SING N N 11 TD2 O5 C1 SING N N 12 TD2 C4 C3 SING N N 13 TD2 C4 O4 SING N N 14 TD2 C1 C2 SING N N 15 TD2 C1 S1 SING N N 16 TD2 C3 C2 SING N N 17 TD2 C3 N71 SING N N 18 TD2 N8 N71 SING Y N 19 TD2 N8 N9 DOUB Y N 20 TD2 C11 S1 SING N N 21 TD2 C11 C21 SING N N 22 TD2 O21 C2 SING N N 23 TD2 C31 C21 SING N N 24 TD2 C31 N7 SING N N 25 TD2 N71 C71 SING Y N 26 TD2 N9 C10 SING Y N 27 TD2 C21 O2 SING N N 28 TD2 N11 N7 SING Y N 29 TD2 N11 N10 DOUB Y N 30 TD2 N7 C8 SING Y N 31 TD2 C71 C10 DOUB Y N 32 TD2 N10 C9 SING Y N 33 TD2 C10 C22 SING N N 34 TD2 C8 C9 DOUB Y N 35 TD2 C9 C12 SING N N 36 TD2 C23 C22 DOUB Y N 37 TD2 C23 C24 SING Y N 38 TD2 C22 C27 SING Y N 39 TD2 C24 C25 DOUB Y N 40 TD2 C12 C13 DOUB Y N 41 TD2 C12 C17 SING Y N 42 TD2 C27 C26 DOUB Y N 43 TD2 C13 C14 SING Y N 44 TD2 C17 C16 DOUB Y N 45 TD2 C25 C26 SING Y N 46 TD2 C26 F28 SING N N 47 TD2 C14 F18 SING N N 48 TD2 C14 C15 DOUB Y N 49 TD2 C16 C15 SING Y N 50 TD2 C1 H1 SING N N 51 TD2 C2 H2 SING N N 52 TD2 C3 H3 SING N N 53 TD2 C4 H4 SING N N 54 TD2 C5 H5 SING N N 55 TD2 C6 H6 SING N N 56 TD2 C6 H7 SING N N 57 TD2 C13 H8 SING N N 58 TD2 C11 H9 SING N N 59 TD2 C51 H10 SING N N 60 TD2 C61 H11 SING N N 61 TD2 C61 H12 SING N N 62 TD2 O6 H13 SING N N 63 TD2 O61 H14 SING N N 64 TD2 C41 H15 SING N N 65 TD2 O4 H16 SING N N 66 TD2 O41 H17 SING N N 67 TD2 C31 H18 SING N N 68 TD2 C21 H19 SING N N 69 TD2 O2 H20 SING N N 70 TD2 O21 H21 SING N N 71 TD2 C8 H22 SING N N 72 TD2 C71 H23 SING N N 73 TD2 C15 H24 SING N N 74 TD2 C16 H25 SING N N 75 TD2 C17 H26 SING N N 76 TD2 C23 H27 SING N N 77 TD2 C24 H28 SING N N 78 TD2 C25 H29 SING N N 79 TD2 C27 H30 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TD2 SMILES ACDLabs 12.01 "C3(C(C(n1cc(nn1)c2cc(ccc2)F)C(O)C(CO)O3)O)SC4C(C(C(C(O4)CO)O)n6cc(c5cc(F)ccc5)nn6)O" TD2 InChI InChI 1.03 "InChI=1S/C28H30F2N6O8S/c29-15-5-1-3-13(7-15)17-9-35(33-31-17)21-23(39)19(11-37)43-27(25(21)41)45-28-26(42)22(24(40)20(12-38)44-28)36-10-18(32-34-36)14-4-2-6-16(30)8-14/h1-10,19-28,37-42H,11-12H2/t19-,20-,21+,22+,23+,24+,25-,26-,27+,28+/m1/s1" TD2 InChIKey InChI 1.03 YGIDGBAHDZEYMT-MQFIMZJJSA-N TD2 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)c4cccc(F)c4)[C@H](O)[C@H]([C@H]1O)n5cc(nn5)c6cccc(F)c6" TD2 SMILES CACTVS 3.385 "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)c4cccc(F)c4)[CH](O)[CH]([CH]1O)n5cc(nn5)c6cccc(F)c6" TD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)F)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)S[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)n5cc(nn5)c6cccc(c6)F)O)CO)O" TD2 SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)F)c2cn(nn2)C3C(C(OC(C3O)SC4C(C(C(C(O4)CO)O)n5cc(nn5)c6cccc(c6)F)O)CO)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TD2 "SYSTEMATIC NAME" ACDLabs 12.01 "3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside" TD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S,3R,4S,5R,6R)-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2S,3R,4S,5R,6R)-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TD2 "Create component" 2015-03-11 PDBJ TD2 "Initial release" 2016-04-27 RCSB #