data_TDN # _chem_comp.id TDN _chem_comp.name "2-[(2E)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-(1-oxidanylpropylidene)-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 N4 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-04-07 _chem_comp.pdbx_modified_date 2016-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 482.386 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TDN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5B48 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TDN O2B O1 O 0 1 N N N 12.123 49.725 215.796 7.550 2.097 -0.915 O2B TDN 1 TDN PB P1 P 0 1 N N N 13.013 48.856 216.586 7.034 0.812 -0.094 PB TDN 2 TDN O3B O2 O 0 1 N N N 14.379 49.294 216.846 7.971 -0.453 -0.431 O3B TDN 3 TDN O1B O3 O 0 1 N N N 12.422 47.957 217.590 7.093 1.098 1.357 O1B TDN 4 TDN O3A O4 O 0 1 N N N 13.229 47.702 215.401 5.515 0.481 -0.513 O3A TDN 5 TDN PA P2 P 0 1 N N N 14.707 46.989 214.898 4.321 -0.353 0.173 PA TDN 6 TDN O1A O5 O 0 1 N N N 15.879 47.897 214.931 4.238 -0.004 1.609 O1A TDN 7 TDN O2A O6 O 0 1 N N N 14.475 46.241 213.607 4.611 -1.929 0.020 O2A TDN 8 TDN O7 O7 O 0 1 N N N 14.798 45.979 216.246 2.928 0.009 -0.549 O7 TDN 9 TDN C7 C1 C 0 1 N N N 14.636 44.534 216.250 1.666 -0.489 -0.101 C7 TDN 10 TDN C6 C2 C 0 1 N N N 13.315 44.114 216.852 0.556 0.047 -1.006 C6 TDN 11 TDN C5 C3 C 0 1 N N N 12.935 42.834 217.104 -0.775 -0.479 -0.533 C5 TDN 12 TDN C4 C4 C 0 1 N N N 13.473 41.565 216.947 -1.639 0.119 0.271 C4 TDN 13 TDN CM4 C5 C 0 1 N N N 14.915 41.346 216.455 -1.342 1.487 0.828 CM4 TDN 14 TDN S1 S1 S 0 1 N N N 11.471 42.680 217.686 -1.533 -2.034 -0.940 S1 TDN 15 TDN C2 C6 C 0 1 N N N 11.440 40.986 217.763 -3.002 -1.783 0.029 C2 TDN 16 TDN C27 C7 C 0 1 N N N 10.305 40.378 218.232 -4.045 -2.604 0.179 C27 TDN 17 TDN O28 O8 O 0 1 N N N 10.203 39.032 218.371 -5.033 -2.296 1.069 O28 TDN 18 TDN C29 C8 C 0 1 N N N 9.130 41.232 218.678 -4.130 -3.871 -0.633 C29 TDN 19 TDN C30 C9 C 0 1 N N N 7.830 40.806 218.028 -3.561 -5.036 0.179 C30 TDN 20 TDN N3 N1 N 0 1 N N N 12.639 40.502 217.277 -2.807 -0.521 0.591 N3 TDN 21 TDN "C7'" C10 C 0 1 N N N 13.044 39.037 217.377 -3.801 0.089 1.477 "C7'" TDN 22 TDN "C5'" C11 C 0 1 Y N N 13.300 38.298 216.176 -4.433 1.269 0.785 "C5'" TDN 23 TDN "C6'" C12 C 0 1 Y N N 14.619 37.857 215.926 -4.161 2.560 1.194 "C6'" TDN 24 TDN "N1'" N2 N 0 1 Y N N 14.930 37.127 214.775 -4.735 3.573 0.562 "N1'" TDN 25 TDN "C2'" C13 C 0 1 Y N N 13.940 36.806 213.914 -5.558 3.366 -0.445 "C2'" TDN 26 TDN CM2 C14 C 0 1 N N N 14.291 36.067 212.785 -6.193 4.551 -1.129 CM2 TDN 27 TDN "N3'" N3 N 0 1 Y N N 12.650 37.190 214.146 -5.847 2.153 -0.869 "N3'" TDN 28 TDN "C4'" C15 C 0 1 Y N N 12.318 37.911 215.241 -5.306 1.085 -0.290 "C4'" TDN 29 TDN "N4'" N4 N 0 1 N N N 11.045 38.252 215.450 -5.611 -0.190 -0.738 "N4'" TDN 30 TDN H1 H1 H 0 1 N N N 14.685 48.912 217.660 7.980 -0.697 -1.366 H1 TDN 31 TDN H4 H4 H 0 1 N N N 14.686 44.168 215.214 1.672 -1.578 -0.138 H4 TDN 32 TDN H5 H5 H 0 1 N N N 15.452 44.087 216.837 1.490 -0.162 0.924 H5 TDN 33 TDN H6 H6 H 0 1 N N N 13.260 44.630 217.822 0.550 1.136 -0.969 H6 TDN 34 TDN H7 H7 H 0 1 N N N 12.546 44.518 216.177 0.733 -0.281 -2.031 H7 TDN 35 TDN H8 H8 H 0 1 N N N 15.127 40.268 216.406 -0.352 1.806 0.501 H8 TDN 36 TDN H9 H9 H 0 1 N N N 15.032 41.788 215.455 -2.088 2.196 0.470 H9 TDN 37 TDN H10 H10 H 0 1 N N N 15.617 41.826 217.152 -1.369 1.450 1.917 H10 TDN 38 TDN H12 H12 H 0 1 N N N 9.343 38.812 218.708 -5.703 -2.986 1.166 H12 TDN 39 TDN H13 H13 H 0 1 N N N 9.333 42.280 218.411 -5.172 -4.074 -0.880 H13 TDN 40 TDN H14 H14 H 0 1 N N N 9.024 41.146 219.770 -3.555 -3.753 -1.551 H14 TDN 41 TDN H15 H15 H 0 1 N N N 7.013 41.452 218.382 -3.623 -5.952 -0.409 H15 TDN 42 TDN H16 H16 H 0 1 N N N 7.920 40.895 216.935 -2.519 -4.833 0.426 H16 TDN 43 TDN H17 H17 H 0 1 N N N 7.612 39.761 218.294 -4.136 -5.154 1.097 H17 TDN 44 TDN H18 H18 H 0 1 N N N 12.234 38.516 217.909 -4.570 -0.644 1.721 H18 TDN 45 TDN H19 H19 H 0 1 N N N 13.963 38.998 217.980 -3.315 0.424 2.394 H19 TDN 46 TDN H20 H20 H 0 1 N N N 15.400 38.088 216.636 -3.488 2.741 2.020 H20 TDN 47 TDN H21 H21 H 0 1 N N N 13.394 35.876 212.177 -7.134 4.794 -0.635 H21 TDN 48 TDN H22 H22 H 0 1 N N N 15.023 36.632 212.190 -5.520 5.406 -1.071 H22 TDN 49 TDN H23 H23 H 0 1 N N N 14.733 35.109 213.097 -6.383 4.308 -2.174 H23 TDN 50 TDN H24 H24 H 0 1 N N N 10.478 37.896 214.707 -6.310 -0.317 -1.398 H24 TDN 51 TDN H25 H25 H 0 1 N N N 10.735 37.867 216.319 -5.127 -0.955 -0.391 H25 TDN 52 TDN H26 H26 H 0 1 N N N 11.222 49.579 216.059 8.460 2.354 -0.713 H26 TDN 53 TDN H2 H2 H 0 1 N N N 15.148 46.476 212.979 4.678 -2.230 -0.897 H2 TDN 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TDN CM2 "C2'" SING N N 1 TDN O2A PA SING N N 2 TDN "C2'" "N3'" DOUB Y N 3 TDN "C2'" "N1'" SING Y N 4 TDN "N3'" "C4'" SING Y N 5 TDN "N1'" "C6'" DOUB Y N 6 TDN PA O1A DOUB N N 7 TDN PA O3A SING N N 8 TDN PA O7 SING N N 9 TDN "C4'" "N4'" SING N N 10 TDN "C4'" "C5'" DOUB Y N 11 TDN O3A PB SING N N 12 TDN O2B PB SING N N 13 TDN "C6'" "C5'" SING Y N 14 TDN "C5'" "C7'" SING N N 15 TDN O7 C7 SING N N 16 TDN C7 C6 SING N N 17 TDN CM4 C4 SING N N 18 TDN PB O3B SING N N 19 TDN PB O1B DOUB N N 20 TDN C6 C5 SING N N 21 TDN C4 C5 DOUB N N 22 TDN C4 N3 SING N N 23 TDN C5 S1 SING N N 24 TDN N3 "C7'" SING N N 25 TDN N3 C2 SING N N 26 TDN S1 C2 SING N N 27 TDN C2 C27 DOUB N E 28 TDN C30 C29 SING N N 29 TDN C27 O28 SING N N 30 TDN C27 C29 SING N N 31 TDN O3B H1 SING N N 32 TDN C7 H4 SING N N 33 TDN C7 H5 SING N N 34 TDN C6 H6 SING N N 35 TDN C6 H7 SING N N 36 TDN CM4 H8 SING N N 37 TDN CM4 H9 SING N N 38 TDN CM4 H10 SING N N 39 TDN O28 H12 SING N N 40 TDN C29 H13 SING N N 41 TDN C29 H14 SING N N 42 TDN C30 H15 SING N N 43 TDN C30 H16 SING N N 44 TDN C30 H17 SING N N 45 TDN "C7'" H18 SING N N 46 TDN "C7'" H19 SING N N 47 TDN "C6'" H20 SING N N 48 TDN CM2 H21 SING N N 49 TDN CM2 H22 SING N N 50 TDN CM2 H23 SING N N 51 TDN "N4'" H24 SING N N 52 TDN "N4'" H25 SING N N 53 TDN O2B H26 SING N N 54 TDN O2A H2 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TDN InChI InChI 1.03 "InChI=1S/C15H24N4O8P2S/c1-4-12(20)15-19(8-11-7-17-10(3)18-14(11)16)9(2)13(30-15)5-6-26-29(24,25)27-28(21,22)23/h7,20H,4-6,8H2,1-3H3,(H,24,25)(H2,16,17,18)(H2,21,22,23)/b15-12+" TDN InChIKey InChI 1.03 MLWWWBMKISFTSY-NTCAYCPXSA-N TDN SMILES_CANONICAL CACTVS 3.385 "CCC(\O)=C1/SC(=C(C)N1Cc2cnc(C)nc2N)CCO[P](O)(=O)O[P](O)(O)=O" TDN SMILES CACTVS 3.385 "CCC(O)=C1SC(=C(C)N1Cc2cnc(C)nc2N)CCO[P](O)(=O)O[P](O)(O)=O" TDN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC/C(=C\1/N(C(=C(S1)CCOP(=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)/O" TDN SMILES "OpenEye OEToolkits" 2.0.4 "CCC(=C1N(C(=C(S1)CCOP(=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TDN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "2-[(2~{E})-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-(1-oxidanylpropylidene)-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TDN "Create component" 2016-04-07 PDBJ TDN "Initial release" 2016-09-28 RCSB #