data_TFU # _chem_comp.id TFU _chem_comp.name "methyl 1-seleno-beta-L-fucopyranoside" _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O4 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(2S,3S,4R,5S,6R)-2-methyl-6-methylselanyl-oxane-3,4,5-triol; methyl 6-deoxy-1-seleno-beta-L-galactopyranoside; methyl 1-seleno-beta-L-fucoside; methyl 1-seleno-L-fucoside; methyl 1-seleno-fucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-11-12 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 241.144 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TFU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EO8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TFU "(2S,3S,4R,5S,6R)-2-methyl-6-methylselanyl-oxane-3,4,5-triol" PDB ? 2 TFU "methyl 6-deoxy-1-seleno-beta-L-galactopyranoside" PDB ? 3 TFU "methyl 1-seleno-beta-L-fucoside" PDB ? 4 TFU "methyl 1-seleno-L-fucoside" PDB ? 5 TFU "methyl 1-seleno-fucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TFU C1 C1 C 0 1 N N R 51.304 8.146 11.993 -0.308 0.009 0.489 C1 TFU 1 TFU C2 C2 C 0 1 N N S 51.232 8.891 13.321 0.580 1.151 -0.013 C2 TFU 2 TFU O2 O2 O 0 1 N N N 52.466 8.754 14.041 0.051 2.400 0.437 O2 TFU 3 TFU C3 C3 C 0 1 N N R 50.950 10.369 13.082 1.997 0.966 0.540 C3 TFU 4 TFU O3 O3 O 0 1 N N N 50.687 11.008 14.339 2.851 1.987 0.018 O3 TFU 5 TFU C4 C4 C 0 1 N N S 49.758 10.554 12.153 2.523 -0.408 0.116 C4 TFU 6 TFU O4 O4 O 0 1 N N N 48.563 10.178 12.845 2.613 -0.466 -1.309 O4 TFU 7 TFU C5 C5 C 0 1 N N S 49.933 9.709 10.889 1.560 -1.490 0.612 C5 TFU 8 TFU C6 C6 C 0 1 N N N 48.756 9.831 9.925 2.047 -2.862 0.141 C6 TFU 9 TFU O5 O5 O 0 1 N N N 50.102 8.343 11.255 0.255 -1.241 0.087 O5 TFU 10 TFU SE1 SE1 SE 0 1 N N N 51.552 6.238 12.294 -2.103 0.194 -0.275 SE1 TFU 11 TFU C7 C7 C 0 1 N N N 53.338 6.176 11.519 -3.006 -1.357 0.513 C7 TFU 12 TFU H1 H1 H 0 1 N N N 52.187 8.473 11.424 -0.369 0.047 1.576 H1 TFU 13 TFU H2 H2 H 0 1 N N N 50.407 8.469 13.914 0.609 1.139 -1.102 H2 TFU 14 TFU HO2 HO2 H 0 1 N Y N 52.406 9.223 14.865 -0.847 2.581 0.128 HO2 TFU 15 TFU H3 H3 H 0 1 N N N 51.835 10.823 12.612 1.975 1.030 1.628 H3 TFU 16 TFU HO3 HO3 H 0 1 N Y N 51.432 10.891 14.916 2.572 2.885 0.243 HO3 TFU 17 TFU H4 H4 H 0 1 N N N 49.702 11.613 11.860 3.510 -0.570 0.550 H4 TFU 18 TFU HO4 HO4 H 0 1 N Y N 48.468 10.710 13.626 2.941 -1.311 -1.648 HO4 TFU 19 TFU H5 H5 H 0 1 N N N 50.836 10.061 10.369 1.523 -1.472 1.702 H5 TFU 20 TFU H61 H63 H 0 1 N N N 48.622 10.885 9.640 2.085 -2.880 -0.948 H61 TFU 21 TFU H62 H62 H 0 1 N N N 48.955 9.231 9.025 3.043 -3.051 0.542 H62 TFU 22 TFU H63 H61 H 0 1 N N N 47.842 9.465 10.415 1.361 -3.632 0.494 H63 TFU 23 TFU H72 H72 H 0 1 N N N 53.725 5.147 11.570 -2.494 -2.270 0.206 H72 TFU 24 TFU H7 H7 H 0 1 N N N 53.293 6.500 10.469 -2.985 -1.277 1.599 H7 TFU 25 TFU H71 H71 H 0 1 N N N 54.005 6.846 12.081 -4.040 -1.388 0.171 H71 TFU 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TFU C6 C5 SING N N 1 TFU C5 O5 SING N N 2 TFU C5 C4 SING N N 3 TFU O5 C1 SING N N 4 TFU C7 SE1 SING N N 5 TFU C1 SE1 SING N N 6 TFU C1 C2 SING N N 7 TFU C4 O4 SING N N 8 TFU C4 C3 SING N N 9 TFU C3 C2 SING N N 10 TFU C3 O3 SING N N 11 TFU C2 O2 SING N N 12 TFU C1 H1 SING N N 13 TFU C2 H2 SING N N 14 TFU O2 HO2 SING N N 15 TFU C3 H3 SING N N 16 TFU O3 HO3 SING N N 17 TFU C4 H4 SING N N 18 TFU O4 HO4 SING N N 19 TFU C5 H5 SING N N 20 TFU C6 H61 SING N N 21 TFU C6 H62 SING N N 22 TFU C6 H63 SING N N 23 TFU C7 H72 SING N N 24 TFU C7 H7 SING N N 25 TFU C7 H71 SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TFU InChI InChI 1.03 "InChI=1S/C7H14O4Se/c1-3-4(8)5(9)6(10)7(11-3)12-2/h3-10H,1-2H3/t3-,4+,5+,6-,7+/m0/s1" TFU InChIKey InChI 1.03 VHTNTJQSKJZERS-CXNFULCWSA-N TFU SMILES_CANONICAL CACTVS 3.385 "C[Se][C@H]1O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]1O" TFU SMILES CACTVS 3.385 "C[Se][CH]1O[CH](C)[CH](O)[CH](O)[CH]1O" TFU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)[Se]C)O)O)O" TFU SMILES "OpenEye OEToolkits" 2.0.4 "CC1C(C(C(C(O1)[Se]C)O)O)O" # _pdbx_chem_comp_identifier.comp_id TFU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.4 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S},4~{R},5~{S},6~{R})-2-methyl-6-methylselanyl-oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support TFU "CARBOHYDRATE ISOMER" L PDB ? TFU "CARBOHYDRATE RING" pyranose PDB ? TFU "CARBOHYDRATE ANOMER" beta PDB ? TFU "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TFU "Create component" 2015-11-12 RCSB TFU "Initial release" 2016-06-29 RCSB TFU "Other modification" 2020-07-03 RCSB TFU "Modify name" 2020-07-17 RCSB TFU "Modify synonyms" 2020-07-17 RCSB TFU "Modify internal type" 2020-07-17 RCSB TFU "Modify linking type" 2020-07-17 RCSB TFU "Modify atom id" 2020-07-17 RCSB TFU "Modify component atom id" 2020-07-17 RCSB TFU "Modify leaving atom flag" 2020-07-17 RCSB ##