data_TG # _chem_comp.id TG _chem_comp.name "2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H11 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-10-23 _chem_comp.pdbx_modified_date 2019-05-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.187 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6MU5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TG "C1'" C1 C 0 1 N N R -26.600 -11.748 23.550 -0.127 -0.699 -0.980 "C1'" TG 1 TG C2 C2 C 0 1 N N N -27.438 -12.872 19.488 -3.859 1.709 -0.408 C2 TG 2 TG "C2'" C3 C 0 1 N N R -26.996 -12.018 24.945 0.849 -0.031 0.021 "C2'" TG 3 TG "C3'" C4 C 0 1 N N S -26.020 -11.325 25.766 2.218 -0.410 -0.605 "C3'" TG 4 TG C4 C5 C 0 1 Y N N -26.450 -13.069 21.620 -2.474 -0.131 -0.232 C4 TG 5 TG "C4'" C6 C 0 1 N N N -25.454 -10.147 24.947 1.933 -1.808 -1.195 "C4'" TG 6 TG C5 C7 C 0 1 Y N N -25.768 -14.290 21.176 -3.466 -0.827 0.468 C5 TG 7 TG C6 C8 C 0 1 N N N -25.982 -14.749 19.811 -4.699 -0.181 0.718 C6 TG 8 TG C8 C9 C 0 1 Y N N -25.309 -13.747 23.280 -1.756 -2.147 0.294 C8 TG 9 TG N1 N1 N 0 1 N N N -26.797 -14.055 18.996 -4.864 1.083 0.268 N1 TG 10 TG N2 N2 N 0 1 N N N -28.309 -12.182 18.575 -4.052 2.995 -0.847 N2 TG 11 TG N3 N3 N 0 1 N N N -27.308 -12.342 20.776 -2.709 1.120 -0.646 N3 TG 12 TG N7 N4 N 0 1 Y N N -24.944 -14.747 22.425 -2.967 -2.053 0.761 N7 TG 13 TG N9 N5 N 0 1 Y N N -26.104 -12.909 22.804 -1.408 -0.984 -0.328 N9 TG 14 TG O1P O1 O 0 1 N N N -22.985 -12.900 27.423 5.488 -0.051 -0.655 O1P TG 15 TG "O2'" O2 O 0 1 N N N -28.066 -11.505 25.154 0.670 1.387 0.047 "O2'" TG 16 TG O2P O3 O 0 1 N N N -23.741 -10.609 27.758 4.168 1.841 0.066 O2P TG 17 TG "O3'" O4 O 0 1 N N N -24.956 -12.220 26.117 3.234 -0.480 0.398 "O3'" TG 18 TG "O4'" O5 O 0 1 N N N -25.545 -10.725 23.554 0.516 -1.922 -1.371 "O4'" TG 19 TG O6 O6 O 0 1 N N N -25.382 -15.900 19.287 -5.592 -0.750 1.323 O6 TG 20 TG P P1 P 0 1 N N N -23.576 -11.717 26.776 4.551 0.446 0.378 P TG 21 TG H1 H1 H 0 1 N N N -27.473 -11.342 23.017 -0.278 -0.056 -1.848 H1 TG 22 TG H2 H2 H 0 1 N N N -26.960 -13.100 25.142 0.740 -0.456 1.018 H2 TG 23 TG H3 H3 H 0 1 N N N -26.502 -10.929 26.672 2.496 0.295 -1.388 H3 TG 24 TG H4 H4 H 0 1 N N N -24.415 -9.918 25.226 2.434 -1.913 -2.157 H4 TG 25 TG H5 H5 H 0 1 N N N -26.070 -9.242 25.054 2.285 -2.578 -0.509 H5 TG 26 TG H6 H6 H 0 1 N N N -24.938 -13.685 24.292 -1.122 -3.017 0.385 H6 TG 27 TG H7 H7 H 0 1 N N N -26.954 -14.362 18.057 -5.701 1.547 0.428 H7 TG 28 TG H8 H8 H 0 1 N N N -28.792 -11.358 18.871 -3.345 3.455 -1.326 H8 TG 29 TG H9 H9 H 0 1 N N N -28.431 -12.526 17.644 -4.896 3.443 -0.679 H9 TG 30 TG H11 H11 H 0 1 N N N -28.329 -11.674 26.051 1.260 1.847 0.659 H11 TG 31 TG O3P O3P O 0 1 N Y N -22.517 -11.410 25.594 5.265 0.395 1.820 O3P TG 32 TG H10 H10 H 0 1 N N N -21.815 -12.049 25.623 6.067 0.932 1.881 H10 TG 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TG N2 C2 SING N N 1 TG N1 C2 SING N N 2 TG N1 C6 SING N N 3 TG O6 C6 DOUB N N 4 TG C2 N3 DOUB N N 5 TG C6 C5 SING N N 6 TG N3 C4 SING N N 7 TG C5 C4 DOUB Y N 8 TG C5 N7 SING Y N 9 TG C4 N9 SING Y N 10 TG N7 C8 DOUB Y N 11 TG N9 C8 SING Y N 12 TG N9 "C1'" SING N N 13 TG "C1'" "O4'" SING N N 14 TG "C1'" "C2'" SING N N 15 TG "O4'" "C4'" SING N N 16 TG "C2'" "O2'" SING N N 17 TG "C2'" "C3'" SING N N 18 TG "C4'" "C3'" SING N N 19 TG "C3'" "O3'" SING N N 20 TG "O3'" P SING N N 21 TG P O1P DOUB N N 22 TG P O2P DOUB N N 23 TG "C1'" H1 SING N N 24 TG "C2'" H2 SING N N 25 TG "C3'" H3 SING N N 26 TG "C4'" H4 SING N N 27 TG "C4'" H5 SING N N 28 TG C8 H6 SING N N 29 TG N1 H7 SING N N 30 TG N2 H8 SING N N 31 TG N2 H9 SING N N 32 TG "O2'" H11 SING N N 33 TG P O3P SING N N 34 TG O3P H10 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TG InChI InChI 1.03 "InChI=1S/C9H11N5O7P/c10-9-12-6-4(7(16)13-9)11-2-14(6)8-5(15)3(1-20-8)21-22(17,18)19/h2-3,5,8,15H,1H2,(H,17,18,19)(H3,10,12,13,16)/t3-,5+,8+/m0/s1" TG InChIKey InChI 1.03 RGZPMPBDCRFFGY-OTEWCHCRSA-N TG SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3OC[C@H](O[P](O)(=O)=O)[C@H]3O" TG SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3OC[CH](O[P](O)(=O)=O)[CH]3O" TG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1[C@H]3[C@@H]([C@H](CO3)OP(=O)(=O)O)O)N=C(NC2=O)N" TG SMILES "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1C3C(C(CO3)OP(=O)(=O)O)O)N=C(NC2=O)N" # _pdbx_chem_comp_identifier.comp_id TG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TG "Create component" 2018-10-23 RCSB TG "Initial release" 2019-06-05 RCSB ##