data_TGC # _chem_comp.id TGC _chem_comp.name 3-thiaglutaryl-CoA _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H40 N7 O19 P3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3R,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18,21-dithia-11,15-diaza-3,5-diphosphatricosan-23-oic acid 3,5-dioxide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-09-14 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 899.672 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TGC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2R0N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TGC P31 P31 P 0 1 N N R 72.452 6.897 37.220 3.720 -1.770 1.693 P31 TGC 1 TGC O33 O33 O 0 1 N N N 72.015 5.545 36.850 4.432 -2.944 2.245 O33 TGC 2 TGC O34 O34 O 0 1 N N N 73.557 7.074 38.217 3.165 -0.861 2.901 O34 TGC 3 TGC O23 O23 O 0 1 N N N 72.792 7.630 35.854 4.733 -0.903 0.791 O23 TGC 4 TGC C19 C19 C 0 1 N N N 73.259 8.959 35.866 5.980 -0.406 1.281 C19 TGC 5 TGC C18 C18 C 0 1 N N R 74.801 9.384 36.001 6.690 0.372 0.171 C18 TGC 6 TGC O22 O22 O 0 1 N N N 75.339 9.541 37.368 5.945 1.560 -0.147 O22 TGC 7 TGC C15 C15 C 0 1 N N R 76.600 8.759 37.594 6.906 2.578 -0.499 C15 TGC 8 TGC N9 N9 N 0 1 Y N N 76.958 8.620 39.016 6.322 3.913 -0.346 N9 TGC 9 TGC C4 C4 C 0 1 Y N N 78.132 9.067 39.615 6.732 5.057 -0.984 C4 TGC 10 TGC N3 N3 N 0 1 Y N N 79.189 9.725 38.977 7.684 5.351 -1.863 N3 TGC 11 TGC C2 C2 C 0 1 Y N N 80.214 10.045 39.828 7.833 6.582 -2.303 C2 TGC 12 TGC N1 N1 N 0 1 Y N N 80.275 9.791 41.161 7.061 7.576 -1.903 N1 TGC 13 TGC C6 C6 C 0 1 Y N N 79.224 9.137 41.797 6.083 7.378 -1.026 C6 TGC 14 TGC N6 N6 N 0 1 N N N 79.309 8.904 43.090 5.279 8.426 -0.613 N6 TGC 15 TGC C5 C5 C 0 1 Y N N 78.033 8.725 40.973 5.884 6.080 -0.527 C5 TGC 16 TGC N7 N7 N 0 1 Y N N 76.828 8.076 41.230 5.017 5.518 0.350 N7 TGC 17 TGC C8 C8 C 0 1 Y N N 76.237 8.039 40.059 5.269 4.246 0.453 C8 TGC 18 TGC C16 C16 C 0 1 N N R 76.199 7.623 36.637 8.052 2.363 0.522 C16 TGC 19 TGC O20 O20 O 0 1 N N N 77.187 6.563 36.496 9.291 2.856 0.009 O20 TGC 20 TGC C17 C17 C 0 1 N N S 75.868 8.319 35.327 8.083 0.821 0.654 C17 TGC 21 TGC O21 O21 O 0 1 N N N 76.978 9.108 34.863 9.104 0.268 -0.180 O21 TGC 22 TGC P39 P39 P 0 1 N N N 78.019 8.684 33.678 10.262 -0.702 0.378 P39 TGC 23 TGC O40 O40 O 0 1 N N N 78.751 7.416 34.056 11.306 -1.026 -0.804 O40 TGC 24 TGC O41 O41 O 0 1 N N N 77.275 8.427 32.400 10.970 -0.034 1.492 O41 TGC 25 TGC O42 O42 O 0 1 N N N 79.023 9.817 33.526 9.605 -2.074 0.905 O42 TGC 26 TGC O32 O32 O 0 1 N N N 71.322 7.741 37.864 2.486 -2.268 0.786 O32 TGC 27 TGC P35 P35 P 0 1 N N S 69.934 7.848 37.151 1.337 -3.380 0.975 P35 TGC 28 TGC O36 O36 O 0 1 N N N 69.961 8.446 35.784 1.917 -4.586 1.606 O36 TGC 29 TGC O37 O37 O 0 1 N N N 69.244 6.488 37.008 0.170 -2.791 1.914 O37 TGC 30 TGC O38 O38 O 0 1 N N N 69.236 8.802 38.268 0.725 -3.767 -0.463 O38 TGC 31 TGC C46 C46 C 0 1 N N N 69.126 8.373 39.708 -0.243 -4.803 -0.643 C46 TGC 32 TGC C45 C45 C 0 1 N N N 69.667 9.514 40.685 -0.609 -4.908 -2.125 C45 TGC 33 TGC C53 C53 C 0 1 N N N 71.196 9.179 40.826 -1.192 -3.576 -2.602 C53 TGC 34 TGC C57 C57 C 0 1 N N N 69.427 10.868 40.034 0.646 -5.235 -2.937 C57 TGC 35 TGC C44 C44 C 0 1 N N R 68.974 9.466 42.069 -1.645 -6.017 -2.318 C44 TGC 36 TGC O52 O52 O 0 1 N N N 69.220 8.171 42.693 -1.056 -7.280 -1.998 O52 TGC 37 TGC C43 C43 C 0 1 N N N 69.472 10.629 43.108 -2.822 -5.768 -1.410 C43 TGC 38 TGC O51 O51 O 0 1 N N N 70.666 10.772 43.485 -3.039 -6.514 -0.479 O51 TGC 39 TGC N68 N68 N 0 1 N N N 68.421 11.453 43.542 -3.634 -4.715 -1.633 N68 TGC 40 TGC C62 C62 C 0 1 N N N 68.638 12.528 44.468 -4.720 -4.416 -0.697 C62 TGC 41 TGC C61 C61 C 0 1 N N N 68.531 13.909 43.987 -5.484 -3.181 -1.179 C61 TGC 42 TGC C69 C69 C 0 1 N N N 69.702 14.706 44.495 -6.601 -2.874 -0.216 C69 TGC 43 TGC O72 O72 O 0 1 N N N 70.803 14.527 43.983 -6.770 -3.574 0.761 O72 TGC 44 TGC N71 N71 N 0 1 N N N 69.444 15.613 45.527 -7.413 -1.822 -0.439 N71 TGC 45 TGC C74 C74 C 0 1 N N N 70.530 16.434 46.071 -8.499 -1.523 0.498 C74 TGC 46 TGC C73 C73 C 0 1 N N N 70.619 17.802 45.644 -9.263 -0.288 0.015 C73 TGC 47 TGC S81 S81 S 0 1 N N N 71.596 18.780 46.704 -10.605 0.081 1.173 S81 TGC 48 TGC "C1'" "C1'" C 0 1 N N N 70.907 18.959 48.266 -11.276 1.464 0.418 "C1'" TGC 49 TGC "O1'" "O1'" O 0 1 N N N 69.886 18.473 48.563 -10.796 1.885 -0.613 "O1'" TGC 50 TGC "C2'" "C2'" C 0 1 N N N 71.659 19.812 49.218 -12.464 2.157 1.035 "C2'" TGC 51 TGC "S3'" "S3'" S 0 1 N N N 70.848 20.032 50.770 -12.937 3.575 0.007 "S3'" TGC 52 TGC "C3'" "C3'" C 0 1 N N N 71.958 21.148 51.752 -14.358 4.268 0.897 "C3'" TGC 53 TGC "C4'" "C4'" C 0 1 N N N 72.693 20.614 53.004 -14.874 5.474 0.157 "C4'" TGC 54 TGC "O2'" "O2'" O 0 1 N N N 73.752 20.037 53.059 -14.339 5.831 -0.866 "O2'" TGC 55 TGC "O3'" "O3'" O 0 1 N N N 72.002 20.872 54.126 -15.929 6.153 0.634 "O3'" TGC 56 TGC HO34 HO34 H 0 0 N N N 74.391 7.111 37.763 2.687 -0.072 2.613 HO34 TGC 57 TGC H191 1H19 H 0 0 N N N 72.938 9.376 34.900 5.801 0.254 2.129 H191 TGC 58 TGC H192 2H19 H 0 0 N N N 72.856 9.317 36.825 6.606 -1.241 1.596 H192 TGC 59 TGC H18 H18 H 0 1 N N N 74.741 10.351 35.480 6.787 -0.253 -0.717 H18 TGC 60 TGC H15 H15 H 0 1 N N N 77.612 9.127 37.367 7.264 2.432 -1.518 H15 TGC 61 TGC H2 H2 H 0 1 N N N 81.063 10.552 39.393 8.617 6.788 -3.018 H2 TGC 62 TGC HN61 1HN6 H 0 0 N N N 79.331 7.917 43.251 5.426 9.318 -0.965 HN61 TGC 63 TGC HN62 2HN6 H 0 0 N N N 80.145 9.318 43.449 4.568 8.269 0.028 HN62 TGC 64 TGC H8 H8 H 0 1 N N N 75.265 7.592 39.914 4.726 3.556 1.081 H8 TGC 65 TGC H16 H16 H 0 1 N N N 75.340 7.065 37.038 7.815 2.830 1.477 H16 TGC 66 TGC HO20 HO20 H 0 0 N N N 77.402 6.450 35.578 9.290 3.806 -0.175 HO20 TGC 67 TGC H17 H17 H 0 1 N N N 75.565 7.671 34.492 8.239 0.530 1.693 H17 TGC 68 TGC HO40 HO40 H 0 0 N N N 78.905 6.894 33.277 12.032 -1.607 -0.539 HO40 TGC 69 TGC HO42 HO42 H 0 0 N N N 79.232 10.172 34.382 9.123 -2.566 0.227 HO42 TGC 70 TGC HO37 HO37 H 0 0 N N N 69.101 6.300 36.088 -0.256 -1.997 1.562 HO37 TGC 71 TGC H461 1H46 H 0 0 N N N 68.070 8.172 39.942 0.172 -5.752 -0.303 H461 TGC 72 TGC H462 2H46 H 0 0 N N N 69.734 7.468 39.853 -1.137 -4.570 -0.064 H462 TGC 73 TGC H531 1H53 H 0 0 N N N 71.648 9.101 39.826 -0.418 -2.809 -2.572 H531 TGC 74 TGC H532 2H53 H 0 0 N N N 71.696 9.978 41.393 -1.557 -3.685 -3.623 H532 TGC 75 TGC H533 3H53 H 0 0 N N N 71.314 8.223 41.358 -2.016 -3.287 -1.950 H533 TGC 76 TGC H571 1H57 H 0 0 N N N 69.369 11.644 40.811 1.027 -6.212 -2.639 H571 TGC 77 TGC H572 2H57 H 0 0 N N N 70.256 11.097 39.348 0.398 -5.250 -3.999 H572 TGC 78 TGC H573 3H57 H 0 0 N N N 68.482 10.842 39.471 1.407 -4.477 -2.753 H573 TGC 79 TGC H44 H44 H 0 1 N N N 67.905 9.636 41.873 -1.980 -6.024 -3.355 H44 TGC 80 TGC HO52 HO52 H 0 0 N N N 69.273 7.501 42.022 -0.734 -7.345 -1.089 HO52 TGC 81 TGC HN68 HN68 H 0 0 N N N 67.497 11.286 43.197 -3.499 -4.156 -2.414 HN68 TGC 82 TGC H621 1H62 H 0 0 N N N 67.883 12.414 45.260 -5.400 -5.267 -0.645 H621 TGC 83 TGC H622 2H62 H 0 0 N N N 69.693 12.424 44.762 -4.304 -4.223 0.292 H622 TGC 84 TGC H611 1H61 H 0 0 N N N 68.531 13.916 42.887 -4.804 -2.331 -1.231 H611 TGC 85 TGC H612 2H61 H 0 0 N N N 67.595 14.355 44.355 -5.900 -3.375 -2.168 H612 TGC 86 TGC HN71 HN71 H 0 0 N N N 68.518 15.702 45.894 -7.278 -1.262 -1.220 HN71 TGC 87 TGC H741 1H74 H 0 0 N N N 70.398 16.451 47.163 -9.179 -2.373 0.549 H741 TGC 88 TGC H742 2H74 H 0 0 N N N 71.451 15.963 45.697 -8.083 -1.329 1.487 H742 TGC 89 TGC H731 1H73 H 0 0 N N N 71.069 17.823 44.641 -8.583 0.563 -0.036 H731 TGC 90 TGC H732 2H73 H 0 0 N N N 69.601 18.219 45.651 -9.679 -0.481 -0.973 H732 TGC 91 TGC "H2'1" "1H2'" H 0 0 N N N 72.633 19.336 49.406 -13.299 1.459 1.097 "H2'1" TGC 92 TGC "H2'2" "2H2'" H 0 0 N N N 71.751 20.807 48.758 -12.204 2.503 2.035 "H2'2" TGC 93 TGC "H3'1" "1H3'" H 0 0 N N N 72.744 21.481 51.058 -15.146 3.517 0.963 "H3'1" TGC 94 TGC "H3'2" "2H3'" H 0 0 N N N 71.268 21.900 52.162 -14.050 4.561 1.901 "H3'2" TGC 95 TGC "HO3'" "HO3'" H 0 0 N N N 72.479 20.538 54.876 -16.225 6.921 0.125 "HO3'" TGC 96 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TGC O41 P39 DOUB N N 1 TGC O42 P39 SING N N 2 TGC P39 O40 SING N N 3 TGC P39 O21 SING N N 4 TGC O21 C17 SING N N 5 TGC C17 C18 SING N N 6 TGC C17 C16 SING N N 7 TGC O36 P35 DOUB N N 8 TGC O23 C19 SING N N 9 TGC O23 P31 SING N N 10 TGC C19 C18 SING N N 11 TGC C18 O22 SING N N 12 TGC O20 C16 SING N N 13 TGC C16 C15 SING N N 14 TGC O33 P31 DOUB N N 15 TGC O37 P35 SING N N 16 TGC P35 O32 SING N N 17 TGC P35 O38 SING N N 18 TGC P31 O32 SING N N 19 TGC P31 O34 SING N N 20 TGC O22 C15 SING N N 21 TGC C15 N9 SING N N 22 TGC O38 C46 SING N N 23 TGC N3 C4 DOUB Y N 24 TGC N3 C2 SING Y N 25 TGC N9 C4 SING Y N 26 TGC N9 C8 SING Y N 27 TGC C4 C5 SING Y N 28 TGC C46 C45 SING N N 29 TGC C2 N1 DOUB Y N 30 TGC C57 C45 SING N N 31 TGC C8 N7 DOUB Y N 32 TGC C45 C53 SING N N 33 TGC C45 C44 SING N N 34 TGC C5 N7 SING Y N 35 TGC C5 C6 DOUB Y N 36 TGC N1 C6 SING Y N 37 TGC C6 N6 SING N N 38 TGC C44 O52 SING N N 39 TGC C44 C43 SING N N 40 TGC C43 O51 DOUB N N 41 TGC C43 N68 SING N N 42 TGC N68 C62 SING N N 43 TGC O72 C69 DOUB N N 44 TGC C61 C62 SING N N 45 TGC C61 C69 SING N N 46 TGC C69 N71 SING N N 47 TGC N71 C74 SING N N 48 TGC C73 C74 SING N N 49 TGC C73 S81 SING N N 50 TGC S81 "C1'" SING N N 51 TGC "C1'" "O1'" DOUB N N 52 TGC "C1'" "C2'" SING N N 53 TGC "C2'" "S3'" SING N N 54 TGC "S3'" "C3'" SING N N 55 TGC "C3'" "C4'" SING N N 56 TGC "C4'" "O2'" DOUB N N 57 TGC "C4'" "O3'" SING N N 58 TGC O34 HO34 SING N N 59 TGC C19 H191 SING N N 60 TGC C19 H192 SING N N 61 TGC C18 H18 SING N N 62 TGC C15 H15 SING N N 63 TGC C2 H2 SING N N 64 TGC N6 HN61 SING N N 65 TGC N6 HN62 SING N N 66 TGC C8 H8 SING N N 67 TGC C16 H16 SING N N 68 TGC O20 HO20 SING N N 69 TGC C17 H17 SING N N 70 TGC O40 HO40 SING N N 71 TGC O42 HO42 SING N N 72 TGC O37 HO37 SING N N 73 TGC C46 H461 SING N N 74 TGC C46 H462 SING N N 75 TGC C53 H531 SING N N 76 TGC C53 H532 SING N N 77 TGC C53 H533 SING N N 78 TGC C57 H571 SING N N 79 TGC C57 H572 SING N N 80 TGC C57 H573 SING N N 81 TGC C44 H44 SING N N 82 TGC O52 HO52 SING N N 83 TGC N68 HN68 SING N N 84 TGC C62 H621 SING N N 85 TGC C62 H622 SING N N 86 TGC C61 H611 SING N N 87 TGC C61 H612 SING N N 88 TGC N71 HN71 SING N N 89 TGC C74 H741 SING N N 90 TGC C74 H742 SING N N 91 TGC C73 H731 SING N N 92 TGC C73 H732 SING N N 93 TGC "C2'" "H2'1" SING N N 94 TGC "C2'" "H2'2" SING N N 95 TGC "C3'" "H3'1" SING N N 96 TGC "C3'" "H3'2" SING N N 97 TGC "O3'" "HO3'" SING N N 98 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TGC SMILES ACDLabs 10.04 "O=C(O)CSCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O" TGC SMILES_CANONICAL CACTVS 3.341 "CC(C)(CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CSCC(O)=O" TGC SMILES CACTVS 3.341 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)CSCC(O)=O" TGC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)(CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)CSCC(=O)O)O" TGC SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CSCC(=O)O)O" TGC InChI InChI 1.03 "InChI=1S/C25H40N7O19P3S2/c1-25(2,20(38)23(39)28-4-3-14(33)27-5-6-56-16(36)9-55-8-15(34)35)10-48-54(45,46)51-53(43,44)47-7-13-19(50-52(40,41)42)18(37)24(49-13)32-12-31-17-21(26)29-11-30-22(17)32/h11-13,18-20,24,37-38H,3-10H2,1-2H3,(H,27,33)(H,28,39)(H,34,35)(H,43,44)(H,45,46)(H2,26,29,30)(H2,40,41,42)/t13-,18-,19-,20+,24-/m1/s1" TGC InChIKey InChI 1.03 GKSSRSUPHZUOQO-ITIYDSSPSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TGC "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18,21-dithia-11,15-diaza-3,5-diphosphatricosan-23-oic acid 3,5-dioxide (non-preferred name)" TGC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[2-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-2-oxo-ethyl]sulfanylethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TGC "Create component" 2007-09-14 RCSB TGC "Modify aromatic_flag" 2011-06-04 RCSB TGC "Modify descriptor" 2011-06-04 RCSB TGC "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TGC _pdbx_chem_comp_synonyms.name "(3R,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18,21-dithia-11,15-diaza-3,5-diphosphatricosan-23-oic acid 3,5-dioxide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##