data_TGR # _chem_comp.id TGR _chem_comp.name 1-deoxy-alpha-D-xylo-hex-3-ulofuranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;1-deoxy 3-keto D-galactitol(Furanose form); 1-deoxy-alpha-D-xylo-hex-3-ulose; 1-deoxy-D-xylo-hex-3-ulose; 1-deoxy-xylo-hex-3-ulose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-03-27 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TGR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4YTS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TGR "1-deoxy 3-keto D-galactitol(Furanose form)" PDB ? 2 TGR 1-deoxy-alpha-D-xylo-hex-3-ulose PDB ? 3 TGR 1-deoxy-D-xylo-hex-3-ulose PDB ? 4 TGR 1-deoxy-xylo-hex-3-ulose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TGR C1 C1 C 0 1 N N N -0.809 -38.350 20.728 2.761 0.926 0.368 C1 TGR 1 TGR C2 C2 C 0 1 N N S -0.209 -37.193 19.947 1.740 -0.214 0.366 C2 TGR 2 TGR O2 O2 O 0 1 N N N 1.123 -37.511 19.566 2.184 -1.249 -0.514 O2 TGR 3 TGR C3 C3 C 0 1 N N S -0.219 -35.877 20.729 0.386 0.314 -0.111 C3 TGR 4 TGR O3 O3 O 0 1 N N N 0.313 -36.088 22.029 0.517 0.930 -1.394 O3 TGR 5 TGR C4 C4 C 0 1 N N S 0.574 -34.784 20.021 -0.649 -0.831 -0.165 C4 TGR 6 TGR O4 O4 O 0 1 N N N 0.524 -34.994 18.618 -0.278 -1.884 0.727 O4 TGR 7 TGR C5 C5 C 0 1 N N R -0.180 -33.502 20.365 -1.966 -0.169 0.299 C5 TGR 8 TGR O5 O5 O 0 1 N N N 0.376 -32.928 21.539 -2.950 -0.234 -0.735 O5 TGR 9 TGR C6 C6 C 0 1 N N N -1.608 -33.963 20.659 -1.570 1.298 0.578 C6 TGR 10 TGR O6 O6 O 0 1 N N N -1.557 -35.382 20.882 -0.152 1.253 0.845 O6 TGR 11 TGR H1 H1 H 0 1 N N N -1.839 -38.100 21.021 2.422 1.715 1.039 H1 TGR 12 TGR H2 H2 H 0 1 N N N -0.815 -39.253 20.099 3.726 0.549 0.708 H2 TGR 13 TGR H3 H3 H 0 1 N N N -0.206 -38.535 21.629 2.862 1.325 -0.641 H3 TGR 14 TGR H4 H4 H 0 1 N N N -0.817 -37.048 19.042 1.640 -0.614 1.375 H4 TGR 15 TGR H5 H5 H 0 1 N N N 1.495 -36.786 19.078 2.296 -0.965 -1.431 H5 TGR 16 TGR H6 H6 H 0 1 N N N 0.305 -35.270 22.511 1.137 1.673 -1.412 H6 TGR 17 TGR H7 H7 H 0 1 N N N 1.605 -34.743 20.401 -0.749 -1.208 -1.183 H7 TGR 18 TGR H8 H8 H 0 1 N N N 0.992 -35.791 18.400 -0.923 -2.602 0.778 H8 TGR 19 TGR H9 H9 H 0 1 N N N -0.166 -32.805 19.514 -2.334 -0.645 1.208 H9 TGR 20 TGR H10 H10 H 0 1 N N N -0.092 -32.130 21.754 -3.797 0.168 -0.498 H10 TGR 21 TGR H11 H11 H 0 1 N N N -1.992 -33.454 21.555 -1.772 1.919 -0.296 H11 TGR 22 TGR H12 H12 H 0 1 N N N -2.261 -33.739 19.802 -2.109 1.678 1.446 H12 TGR 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TGR O4 C4 SING N N 1 TGR O2 C2 SING N N 2 TGR C2 C1 SING N N 3 TGR C2 C3 SING N N 4 TGR C4 C5 SING N N 5 TGR C4 C3 SING N N 6 TGR C5 C6 SING N N 7 TGR C5 O5 SING N N 8 TGR C6 O6 SING N N 9 TGR C3 O6 SING N N 10 TGR C3 O3 SING N N 11 TGR C1 H1 SING N N 12 TGR C1 H2 SING N N 13 TGR C1 H3 SING N N 14 TGR C2 H4 SING N N 15 TGR O2 H5 SING N N 16 TGR O3 H6 SING N N 17 TGR C4 H7 SING N N 18 TGR O4 H8 SING N N 19 TGR C5 H9 SING N N 20 TGR O5 H10 SING N N 21 TGR C6 H11 SING N N 22 TGR C6 H12 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TGR SMILES ACDLabs 12.01 "CC(C1(OCC(C1O)O)O)O" TGR InChI InChI 1.03 "InChI=1S/C6H12O5/c1-3(7)6(10)5(9)4(8)2-11-6/h3-5,7-10H,2H2,1H3/t3-,4+,5-,6-/m0/s1" TGR InChIKey InChI 1.03 ZCEUQVBSRPIKHS-FSIIMWSLSA-N TGR SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)[C@]1(O)OC[C@@H](O)[C@@H]1O" TGR SMILES CACTVS 3.385 "C[CH](O)[C]1(O)OC[CH](O)[CH]1O" TGR SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]([C@]1([C@H]([C@@H](CO1)O)O)O)O" TGR SMILES "OpenEye OEToolkits" 1.9.2 "CC(C1(C(C(CO1)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TGR "SYSTEMATIC NAME" ACDLabs 12.01 1-deoxy-alpha-D-xylo-hex-3-ulofuranose TGR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S,3S,4R)-2-[(1S)-1-oxidanylethyl]oxolane-2,3,4-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support TGR "CARBOHYDRATE ISOMER" D PDB ? TGR "CARBOHYDRATE RING" furanose PDB ? TGR "CARBOHYDRATE ANOMER" alpha PDB ? TGR "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TGR "Create component" 2015-03-27 PDBJ TGR "Initial release" 2016-03-23 RCSB TGR "Other modification" 2020-07-03 RCSB TGR "Modify synonyms" 2020-07-17 RCSB TGR "Modify internal type" 2020-07-17 RCSB TGR "Modify linking type" 2020-07-17 RCSB ##