data_THY # _chem_comp.id THY _chem_comp.name "C2-1-HYDROXY-2-METHYL-BUTYL-THIAMIN DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H28 N4 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-11-30 _chem_comp.pdbx_modified_date 2012-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.439 _chem_comp.one_letter_code ? _chem_comp.three_letter_code THY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal THY O2B O2B O 0 1 N N N 70.246 4.863 4.433 8.318 -1.255 1.311 O2B THY 1 THY PB PB P 0 1 N N N 68.811 5.037 5.145 7.517 -0.147 0.460 PB THY 2 THY O3B O3B O 0 1 N N N 67.674 4.079 4.745 7.755 1.305 1.113 O3B THY 3 THY O1B O1B O 0 1 N N N 68.348 6.442 5.039 8.008 -0.147 -0.936 O1B THY 4 THY O3A O3A O 0 1 N N N 69.026 4.829 6.782 5.945 -0.492 0.476 O3A THY 5 THY PA PA P 0 1 N N S 68.907 3.528 7.700 4.699 -0.073 -0.454 PA THY 6 THY O1A O1A O 0 1 N N N 69.186 4.018 9.074 4.819 1.354 -0.826 O1A THY 7 THY O2A O2A O 0 1 N N N 67.603 2.859 7.418 4.696 -0.977 -1.786 O2A THY 8 THY O5G O5G O 0 1 N N N 70.012 2.538 7.108 3.325 -0.304 0.354 O5G THY 9 THY C5B C5B C 0 1 N N N 71.398 2.769 7.441 2.046 0.072 -0.162 C5B THY 10 THY C5A C5A C 0 1 N N N 72.224 1.831 6.541 0.961 -0.286 0.855 C5A THY 11 THY C5 C5 C 0 1 Y N N 73.719 2.110 6.704 -0.387 0.110 0.311 C5 THY 12 THY C4 C4 C 0 1 Y N N 74.745 1.304 7.221 -1.159 -0.662 -0.410 C4 THY 13 THY C4A C4A C 0 1 N N N 74.439 -0.102 7.803 -0.761 -2.068 -0.778 C4A THY 14 THY S1 S1 S 0 1 Y N N 74.442 3.554 6.149 -1.152 1.674 0.561 S1 THY 15 THY C2 C2 C 0 1 Y N N 76.061 3.102 6.589 -2.549 1.171 -0.384 C2 THY 16 THY C8 C8 C -1 1 N N N 77.280 3.898 6.327 -3.628 1.920 -0.640 C8 THY 17 THY O9 O9 O 0 1 N N N 78.418 3.527 6.716 -4.178 1.919 -1.886 O9 THY 18 THY C9 C9 C 0 1 N N S 77.121 5.300 5.711 -4.235 2.765 0.450 C9 THY 19 THY C11 C11 C 0 1 N N N 77.058 6.271 6.907 -3.197 3.771 0.953 C11 THY 20 THY C10 C10 C 0 1 N N N 78.241 5.712 4.752 -5.448 3.516 -0.102 C10 THY 21 THY C12 C12 C 0 1 N N N 78.067 7.227 4.530 -6.137 4.276 1.033 C12 THY 22 THY N3 N3 N 1 1 Y N N 75.995 1.861 7.158 -2.350 -0.117 -0.811 N3 THY 23 THY C35 C35 C 0 1 N N N 77.162 1.205 7.741 -3.327 -0.847 -1.623 C35 THY 24 THY "C5'" C5* C 0 1 Y N N 77.123 1.409 9.318 -4.155 -1.737 -0.733 "C5'" THY 25 THY "C6'" C6* C 0 1 Y N N 76.994 0.286 10.185 -3.908 -3.094 -0.660 "C6'" THY 26 THY "N1'" N1* N 0 1 Y N N 77.044 0.469 11.520 -4.656 -3.846 0.134 "N1'" THY 27 THY "C2'" C2* C 0 1 Y N N 77.154 1.679 12.140 -5.627 -3.319 0.851 "C2'" THY 28 THY C2A C2A C 0 1 N N N 77.183 1.820 13.671 -6.451 -4.215 1.740 C2A THY 29 THY "N3'" N3* N 0 1 Y N N 77.269 2.825 11.378 -5.898 -2.030 0.814 "N3'" THY 30 THY "C4'" C4* C 0 1 Y N N 77.262 2.681 9.965 -5.189 -1.210 0.045 "C4'" THY 31 THY "N4'" N4* N 0 1 N N N 77.450 3.840 9.314 -5.473 0.146 0.012 "N4'" THY 32 THY H2B H2B H 0 1 N N N 70.130 4.829 3.491 9.273 -1.111 1.344 H2B THY 33 THY H3B H3B H 0 1 N N N 67.143 3.882 5.507 7.456 1.378 2.030 H3B THY 34 THY H3A H3A H 0 1 N N N 67.137 2.717 8.233 4.620 -1.926 -1.618 H3A THY 35 THY H5B1 1H5B H 0 0 N N N 71.590 2.569 8.505 2.031 1.146 -0.347 H5B1 THY 36 THY H5B2 2H5B H 0 0 N N N 71.669 3.819 7.255 1.860 -0.460 -1.095 H5B2 THY 37 THY H5A1 1H5A H 0 0 N N N 71.942 2.005 5.492 0.977 -1.360 1.040 H5A1 THY 38 THY H5A2 2H5A H 0 0 N N N 72.019 0.788 6.824 1.147 0.246 1.788 H5A2 THY 39 THY H4A1 1H4A H 0 0 N N N 73.486 -0.072 8.352 -1.113 -2.758 -0.011 H4A1 THY 40 THY H4A2 2H4A H 0 0 N N N 75.247 -0.399 8.487 -1.207 -2.333 -1.737 H4A2 THY 41 THY H4A3 3H4A H 0 0 N N N 74.367 -0.831 6.983 0.324 -2.131 -0.852 H4A3 THY 42 THY H9 H9 H 0 1 N N N 78.994 3.434 5.967 -4.893 2.559 -2.001 H9 THY 43 THY HA HA H 0 1 N N N 76.217 5.313 5.085 -4.548 2.124 1.274 HA THY 44 THY H111 1H11 H 0 0 N N N 76.145 6.881 6.836 -2.883 4.412 0.129 H111 THY 45 THY H112 2H11 H 0 0 N N N 77.940 6.928 6.893 -3.636 4.382 1.742 H112 THY 46 THY H113 3H11 H 0 0 N N N 77.043 5.697 7.845 -2.333 3.236 1.346 H113 THY 47 THY H101 1H10 H 0 0 N N N 78.185 5.156 3.804 -5.121 4.222 -0.866 H101 THY 48 THY H102 2H10 H 0 0 N N N 79.227 5.493 5.188 -6.147 2.805 -0.540 H102 THY 49 THY H121 1H12 H 0 0 N N N 77.133 7.412 3.979 -7.002 4.811 0.639 H121 THY 50 THY H122 2H12 H 0 0 N N N 78.918 7.612 3.949 -6.464 3.570 1.797 H122 THY 51 THY H123 3H12 H 0 0 N N N 78.026 7.738 5.503 -5.438 4.988 1.471 H123 THY 52 THY H351 1H35 H 0 0 N N N 78.084 1.642 7.328 -3.978 -0.138 -2.134 H351 THY 53 THY H352 2H35 H 0 0 N N N 77.142 0.131 7.504 -2.804 -1.456 -2.360 H352 THY 54 THY "H6'" H6* H 0 1 N N N 76.857 -0.704 9.776 -3.114 -3.536 -1.244 "H6'" THY 55 THY H2A1 1H2A H 0 0 N N N 76.292 2.371 14.005 -5.992 -4.270 2.727 H2A1 THY 56 THY H2A2 2H2A H 0 0 N N N 78.088 2.368 13.971 -7.459 -3.810 1.831 H2A2 THY 57 THY H2A3 3H2A H 0 0 N N N 77.190 0.821 14.132 -6.498 -5.214 1.305 H2A3 THY 58 THY "H4'1" 1H4* H 0 0 N N N 78.305 3.797 8.797 -5.048 0.714 -0.649 "H4'1" THY 59 THY "H4'2" 2H4* H 0 0 N N N 77.497 4.590 9.974 -6.097 0.526 0.649 "H4'2" THY 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THY O2B PB SING N N 1 THY O2B H2B SING N N 2 THY PB O3B SING N N 3 THY PB O1B DOUB N N 4 THY PB O3A SING N N 5 THY O3B H3B SING N N 6 THY O3A PA SING N N 7 THY PA O1A DOUB N N 8 THY PA O2A SING N N 9 THY PA O5G SING N N 10 THY O2A H3A SING N N 11 THY O5G C5B SING N N 12 THY C5B C5A SING N N 13 THY C5B H5B1 SING N N 14 THY C5B H5B2 SING N N 15 THY C5A C5 SING N N 16 THY C5A H5A1 SING N N 17 THY C5A H5A2 SING N N 18 THY C5 C4 DOUB Y N 19 THY C5 S1 SING Y N 20 THY C4 C4A SING N N 21 THY C4 N3 SING Y N 22 THY C4A H4A1 SING N N 23 THY C4A H4A2 SING N N 24 THY C4A H4A3 SING N N 25 THY S1 C2 SING Y N 26 THY C2 C8 SING N N 27 THY C2 N3 DOUB Y N 28 THY C8 O9 SING N N 29 THY C8 C9 SING N N 30 THY O9 H9 SING N N 31 THY C9 C11 SING N N 32 THY C9 C10 SING N N 33 THY C9 HA SING N N 34 THY C11 H111 SING N N 35 THY C11 H112 SING N N 36 THY C11 H113 SING N N 37 THY C10 C12 SING N N 38 THY C10 H101 SING N N 39 THY C10 H102 SING N N 40 THY C12 H121 SING N N 41 THY C12 H122 SING N N 42 THY C12 H123 SING N N 43 THY N3 C35 SING N N 44 THY C35 "C5'" SING N N 45 THY C35 H351 SING N N 46 THY C35 H352 SING N N 47 THY "C5'" "C6'" DOUB Y N 48 THY "C5'" "C4'" SING Y N 49 THY "C6'" "N1'" SING Y N 50 THY "C6'" "H6'" SING N N 51 THY "N1'" "C2'" DOUB Y N 52 THY "C2'" C2A SING N N 53 THY "C2'" "N3'" SING Y N 54 THY C2A H2A1 SING N N 55 THY C2A H2A2 SING N N 56 THY C2A H2A3 SING N N 57 THY "N3'" "C4'" DOUB Y N 58 THY "C4'" "N4'" SING N N 59 THY "N4'" "H4'1" SING N N 60 THY "N4'" "H4'2" SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THY SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCCc1sc([C-](O)C(C)CC)[n+](c1C)Cc2cnc(nc2N)C" THY InChI InChI 1.03 "InChI=1S/C17H28N4O8P2S/c1-5-10(2)15(22)17-21(9-13-8-19-12(4)20-16(13)18)11(3)14(32-17)6-7-28-31(26,27)29-30(23,24)25/h8,10,22H,5-7,9H2,1-4H3,(H,26,27)(H2,18,19,20)(H2,23,24,25)/t10-/m0/s1" THY InChIKey InChI 1.03 MZVVOGXJVCPANP-JTQLQIEISA-N THY SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C-](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N" THY SMILES CACTVS 3.385 "CC[CH](C)[C-](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N" THY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC[C@H](C)[C-](c1[n+](c(c(s1)CCO[P@](=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)O" THY SMILES "OpenEye OEToolkits" 1.7.5 "CCC(C)[C-](c1[n+](c(c(s1)CCOP(=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THY "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-1-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium-2-yl}-1-hydroxy-2-methylbutan-1-ide" THY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-2-[(2S)-1-hydroxy-2-methyl-butyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site THY "Create component" 2004-11-30 EBI THY "Modify descriptor" 2011-06-04 RCSB THY "Modify descriptor" 2012-01-05 RCSB THY "Modify coordinates" 2012-01-05 RCSB #