data_TLN # _chem_comp.id TLN _chem_comp.name "[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H15 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id DU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-01-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.219 _chem_comp.one_letter_code U _chem_comp.three_letter_code TLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HHX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TLN P P P 0 1 N N N -6.215 -9.738 1.168 0.975 -0.258 -4.245 P TLN 1 TLN OP1 O1P O 0 1 N N N -5.754 -8.585 1.971 2.282 0.266 -3.792 OP1 TLN 2 TLN OP2 O2P O 0 1 N N N -6.322 -11.078 1.789 0.199 0.880 -5.078 OP2 TLN 3 TLN OP3 O3P O 0 1 N Y N -7.644 -9.363 0.526 1.210 -1.544 -5.185 OP3 TLN 4 TLN "O5'" O5* O 0 1 N N N -5.291 -9.846 -0.142 0.094 -0.682 -2.966 "O5'" TLN 5 TLN "C5'" C5* C 0 1 N N N -5.257 -11.005 -0.954 -0.078 0.494 -2.175 "C5'" TLN 6 TLN "C4'" C4* C 0 1 N N R -4.545 -10.642 -2.258 -0.911 0.159 -0.937 "C4'" TLN 7 TLN "O4'" O4* O 0 1 N N N -5.343 -9.779 -3.063 -0.348 -0.830 -0.029 "O4'" TLN 8 TLN "C1'" C1* C 0 1 N N R -4.448 -9.176 -3.989 -1.103 -0.754 1.196 "C1'" TLN 9 TLN N1 N1 N 0 1 N N N -4.486 -7.675 -3.927 -0.213 -0.465 2.323 N1 TLN 10 TLN C6 C6 C 0 1 N N N -4.861 -7.037 -2.764 1.005 0.112 2.093 C6 TLN 11 TLN C5 C5 C 0 1 N N N -4.879 -5.681 -2.642 1.826 0.378 3.132 C5 TLN 12 TLN C5M C5M C 0 1 N N N -5.222 -5.040 -1.301 3.172 1.013 2.898 C5M TLN 13 TLN C4 C4 C 0 1 N N N -4.558 -4.841 -3.790 1.407 0.048 4.443 C4 TLN 14 TLN O4 O4 O 0 1 N N N -4.593 -3.612 -3.824 2.129 0.278 5.395 O4 TLN 15 TLN N3 N3 N 0 1 N N N -4.203 -5.540 -4.935 0.196 -0.515 4.628 N3 TLN 16 TLN C2 C2 C 0 1 N N N -4.120 -6.929 -5.055 -0.601 -0.770 3.575 C2 TLN 17 TLN O2 O2 O 0 1 N N N -3.737 -7.444 -6.104 -1.689 -1.282 3.756 O2 TLN 18 TLN "C3'" C3* C 0 1 N N S -3.225 -9.901 -2.074 -1.236 1.333 0.055 "C3'" TLN 19 TLN "C2'" C2* C 0 1 N N R -3.116 -9.811 -3.587 -2.112 0.418 0.989 "C2'" TLN 20 TLN "O2'" O2* O 0 1 N N N -3.169 -11.167 -4.025 -3.075 -0.114 0.036 "O2'" TLN 21 TLN "O3'" O3* O 0 1 N N N -2.206 -10.658 -1.442 -1.995 2.377 -0.557 "O3'" TLN 22 TLN "C6'" C6* C 0 1 N N N -4.107 -11.804 -3.161 -2.363 -0.353 -1.194 "C6'" TLN 23 TLN HOP2 2HOP H 0 0 N N N -6.618 -11.818 1.273 -0.645 0.498 -5.354 HOP2 TLN 24 TLN HOP3 3HOP H 0 0 N N N -7.940 -10.103 0.010 1.740 -1.247 -5.937 HOP3 TLN 25 TLN "H5'" 1H5* H 0 1 N N N -6.269 -11.347 -1.174 -0.591 1.255 -2.763 "H5'" TLN 26 TLN "H5''" 2H5* H 0 0 N N N -4.708 -11.792 -0.435 0.896 0.871 -1.866 "H5''" TLN 27 TLN "H1'" H1* H 0 1 N N N -4.663 -9.547 -4.983 -1.639 -1.687 1.369 "H1'" TLN 28 TLN H6 H6 H 0 1 N N N -5.166 -7.663 -1.940 1.310 0.354 1.085 H6 TLN 29 TLN H71 1H5M H 0 1 N N N -4.319 -4.619 -0.855 3.682 1.147 3.852 H71 TLN 30 TLN H72 2H5M H 0 1 N N N -5.637 -5.770 -0.606 3.771 0.369 2.254 H72 TLN 31 TLN H73 3H5M H 0 1 N N N -5.942 -4.232 -1.433 3.038 1.983 2.418 H73 TLN 32 TLN H3 H3 H 0 1 N N N -3.921 -4.959 -5.719 -0.099 -0.741 5.524 H3 TLN 33 TLN "H3'" H3* H 0 1 N N N -3.350 -8.930 -1.599 -0.347 1.714 0.558 "H3'" TLN 34 TLN "H2'" 1H2* H 0 1 N N N -2.256 -9.261 -3.955 -2.526 0.883 1.884 "H2'" TLN 35 TLN "HO3'" H3T H 0 0 N Y N -1.384 -10.196 -1.327 -2.346 2.925 0.158 "HO3'" TLN 36 TLN "H6'1" 1H6* H 0 0 N N N -4.951 -12.211 -3.719 -2.822 0.204 -2.010 "H6'1" TLN 37 TLN "H6'2" 2H6* H 0 0 N N N -3.610 -12.581 -2.581 -2.352 -1.419 -1.423 "H6'2" TLN 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TLN P OP1 DOUB N N 1 TLN P OP2 SING N N 2 TLN P OP3 SING N N 3 TLN P "O5'" SING N N 4 TLN OP2 HOP2 SING N N 5 TLN OP3 HOP3 SING N N 6 TLN "O5'" "C5'" SING N N 7 TLN "C5'" "C4'" SING N N 8 TLN "C5'" "H5'" SING N N 9 TLN "C5'" "H5''" SING N N 10 TLN "C4'" "O4'" SING N N 11 TLN "C4'" "C3'" SING N N 12 TLN "C4'" "C6'" SING N N 13 TLN "O4'" "C1'" SING N N 14 TLN "C1'" N1 SING N N 15 TLN "C1'" "C2'" SING N N 16 TLN "C1'" "H1'" SING N N 17 TLN N1 C6 SING N N 18 TLN N1 C2 SING N N 19 TLN C6 C5 DOUB N N 20 TLN C6 H6 SING N N 21 TLN C5 C5M SING N N 22 TLN C5 C4 SING N N 23 TLN C5M H71 SING N N 24 TLN C5M H72 SING N N 25 TLN C5M H73 SING N N 26 TLN C4 O4 DOUB N N 27 TLN C4 N3 SING N N 28 TLN N3 C2 SING N N 29 TLN N3 H3 SING N N 30 TLN C2 O2 DOUB N N 31 TLN "C3'" "C2'" SING N N 32 TLN "C3'" "O3'" SING N N 33 TLN "C3'" "H3'" SING N N 34 TLN "C2'" "O2'" SING N N 35 TLN "C2'" "H2'" SING N N 36 TLN "O2'" "C6'" SING N N 37 TLN "O3'" "HO3'" SING N N 38 TLN "C6'" "H6'1" SING N N 39 TLN "C6'" "H6'2" SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TLN SMILES ACDLabs 10.04 "O=C1C(=CN(C(=O)N1)C3OC2(C(O)C3OC2)COP(=O)(O)O)C" TLN SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@@H]2O[C@]3(CO[C@@H]2[C@@H]3O)CO[P](O)(O)=O)C(=O)NC1=O" TLN SMILES CACTVS 3.341 "CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O)CO[P](O)(O)=O)C(=O)NC1=O" TLN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@@](O2)(CO3)COP(=O)(O)O)O" TLN SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C3C(C(O2)(CO3)COP(=O)(O)O)O" TLN InChI InChI 1.03 "InChI=1S/C11H15N2O9P/c1-5-2-13(10(16)12-8(5)15)9-6-7(14)11(22-9,3-20-6)4-21-23(17,18)19/h2,6-7,9,14H,3-4H2,1H3,(H,12,15,16)(H2,17,18,19)/t6-,7+,9-,11-/m1/s1" TLN InChIKey InChI 1.03 BXKGBLDLIZEIJX-YRCORFKGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TLN "SYSTEMATIC NAME" ACDLabs 10.04 "1-{2,5-anhydro-4-[(phosphonooxy)methyl]-alpha-L-lyxofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione" TLN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,4R,5R,7S)-7-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3,6-dioxabicyclo[2.2.1]heptan-1-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TLN "Create component" 2001-01-04 RCSB TLN "Modify linking type" 2011-06-04 RCSB TLN "Modify descriptor" 2011-06-04 RCSB #