data_TNM # _chem_comp.id TNM _chem_comp.name "[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-phosphonooxy-phosphinic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 N5 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Tenofovir-monophosphate; PMPA-monophosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-12-18 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.192 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TNM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FKB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TNM PA PA P 0 1 N N S 36.092 -19.098 0.473 -1.249 0.607 -0.191 PA TNM 1 TNM O1A O1A O 0 1 N N N 37.154 -18.651 1.419 -0.400 -0.724 -0.507 O1A TNM 2 TNM O2A O2A O 0 1 N N N 35.388 -18.031 -0.290 -1.070 0.982 1.229 O2A TNM 3 TNM O3A O3A O 0 1 N N N 34.988 -19.913 1.297 -2.808 0.331 -0.481 O3A TNM 4 TNM PB PB P 0 1 N N N 35.174 -20.309 2.846 -3.889 -0.706 0.110 PB TNM 5 TNM O1B O1B O 0 1 N N N 34.887 -19.026 3.544 -3.610 -2.173 -0.494 O1B TNM 6 TNM O2B O2B O 0 1 N N N 36.586 -20.770 2.906 -3.776 -0.751 1.585 O2B TNM 7 TNM O3B O3B O 0 1 N N N 34.147 -21.371 3.014 -5.371 -0.230 -0.301 O3B TNM 8 TNM "C9'" "C9'" C 0 1 N N N 36.900 -20.145 -0.726 -0.665 1.967 -1.256 "C9'" TNM 9 TNM "O9'" "O9'" O 0 1 N N N 35.983 -20.611 -1.635 0.746 2.128 -1.091 "O9'" TNM 10 TNM "C8'" "C8'" C 0 1 N N N 36.532 -22.973 -2.157 1.038 4.304 -0.079 "C8'" TNM 11 TNM "C7'" "C7'" C 0 1 N N R 35.496 -21.969 -1.586 1.117 2.789 0.120 "C7'" TNM 12 TNM "C6'" "C6'" C 0 1 N N N 34.148 -21.882 -2.458 2.547 2.398 0.496 "C6'" TNM 13 TNM N9 N9 N 0 1 Y N N 34.345 -21.686 -3.888 2.598 0.966 0.804 N9 TNM 14 TNM C4 C4 C 0 1 Y N N 34.200 -22.597 -4.919 2.749 -0.053 -0.101 C4 TNM 15 TNM N3 N3 N 0 1 Y N N 34.021 -23.968 -4.792 2.889 -0.124 -1.421 N3 TNM 16 TNM C2 C2 C 0 1 Y N N 33.896 -24.580 -6.014 3.018 -1.288 -2.021 C2 TNM 17 TNM N1 N1 N 0 1 Y N N 33.961 -23.980 -7.265 3.015 -2.431 -1.359 N1 TNM 18 TNM C6 C6 C 0 1 Y N N 34.172 -22.607 -7.359 2.881 -2.460 -0.037 C6 TNM 19 TNM N6 N6 N 0 1 N N N 34.227 -22.080 -8.584 2.880 -3.662 0.648 N6 TNM 20 TNM C5 C5 C 0 1 Y N N 34.316 -21.840 -6.116 2.741 -1.241 0.649 C5 TNM 21 TNM N7 N7 N 0 1 Y N N 34.570 -20.499 -5.820 2.588 -0.892 1.949 N7 TNM 22 TNM C8 C8 C 0 1 Y N N 34.538 -20.454 -4.495 2.509 0.404 2.042 C8 TNM 23 TNM HO1A HO1A H 0 0 N N N 37.976 -18.556 0.952 -0.471 -1.028 -1.422 HO1A TNM 24 TNM HO1B HO1B H 0 0 N N N 34.826 -19.181 4.479 -3.668 -2.219 -1.458 HO1B TNM 25 TNM HO3B HO3B H 0 0 N N N 33.928 -21.737 2.165 -6.074 -0.810 0.022 HO3B TNM 26 TNM "H9'" "H9'" H 0 1 N N N 37.672 -19.566 -1.253 -0.884 1.732 -2.298 "H9'" TNM 27 TNM "H9'A" "H9'A" H 0 0 N N N 37.362 -20.999 -0.208 -1.172 2.890 -0.978 "H9'A" TNM 28 TNM "H8'" "H8'" H 0 1 N N N 36.277 -23.211 -3.200 0.002 4.593 -0.255 "H8'" TNM 29 TNM "H8'A" "H8'A" H 0 0 N N N 37.536 -22.525 -2.118 1.410 4.808 0.813 "H8'A" TNM 30 TNM "H8'B" "H8'B" H 0 0 N N N 36.518 -23.895 -1.557 1.645 4.589 -0.938 "H8'B" TNM 31 TNM "H7'" "H7'" H 0 1 N N N 35.316 -22.344 -0.568 0.437 2.492 0.919 "H7'" TNM 32 TNM "H6'" "H6'" H 0 1 N N N 33.604 -22.828 -2.324 3.214 2.614 -0.338 "H6'" TNM 33 TNM "H6'A" "H6'A" H 0 0 N N N 33.604 -20.996 -2.098 2.862 2.969 1.370 "H6'A" TNM 34 TNM H2 H2 H 0 1 N N N 33.728 -25.647 -6.002 3.129 -1.310 -3.095 H2 TNM 35 TNM HN6 HN6 H 0 1 N N N 34.241 -21.082 -8.518 2.977 -4.497 0.163 HN6 TNM 36 TNM HN6A HN6A H 0 0 N N N 35.057 -22.395 -9.045 2.781 -3.671 1.613 HN6A TNM 37 TNM H8 H8 H 0 1 N N N 34.652 -19.537 -3.937 2.384 0.952 2.964 H8 TNM 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TNM "C9'" PA SING N N 1 TNM O2A PA DOUB N N 2 TNM PA O3A SING N N 3 TNM PA O1A SING N N 4 TNM O1A HO1A SING N N 5 TNM O3A PB SING N N 6 TNM PB O2B DOUB N N 7 TNM PB O3B SING N N 8 TNM PB O1B SING N N 9 TNM O1B HO1B SING N N 10 TNM O3B HO3B SING N N 11 TNM "O9'" "C9'" SING N N 12 TNM "C9'" "H9'" SING N N 13 TNM "C9'" "H9'A" SING N N 14 TNM "O9'" "C7'" SING N N 15 TNM "C8'" "C7'" SING N N 16 TNM "C8'" "H8'" SING N N 17 TNM "C8'" "H8'A" SING N N 18 TNM "C8'" "H8'B" SING N N 19 TNM "C6'" "C7'" SING N N 20 TNM "C7'" "H7'" SING N N 21 TNM N9 "C6'" SING N N 22 TNM "C6'" "H6'" SING N N 23 TNM "C6'" "H6'A" SING N N 24 TNM C4 N9 SING Y N 25 TNM C8 N9 SING Y N 26 TNM C5 C4 DOUB Y N 27 TNM C4 N3 SING Y N 28 TNM C2 N3 DOUB Y N 29 TNM N1 C2 SING Y N 30 TNM C2 H2 SING N N 31 TNM C6 N1 DOUB Y N 32 TNM N6 C6 SING N N 33 TNM C6 C5 SING Y N 34 TNM N6 HN6 SING N N 35 TNM N6 HN6A SING N N 36 TNM C5 N7 SING Y N 37 TNM N7 C8 DOUB Y N 38 TNM C8 H8 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TNM SMILES_CANONICAL CACTVS 3.341 "C[C@H](Cn1cnc2c(N)ncnc12)OC[P@@](O)(=O)O[P](O)(O)=O" TNM SMILES CACTVS 3.341 "C[CH](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)O[P](O)(O)=O" TNM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H](Cn1cnc2c1ncnc2N)OC[P@](=O)(O)OP(=O)(O)O" TNM SMILES "OpenEye OEToolkits" 1.5.0 "CC(Cn1cnc2c1ncnc2N)OCP(=O)(O)OP(=O)(O)O" TNM InChI InChI 1.03 "InChI=1S/C9H15N5O7P2/c1-6(20-5-22(15,16)21-23(17,18)19)2-14-4-13-7-8(10)11-3-12-9(7)14/h3-4,6H,2,5H2,1H3,(H,15,16)(H2,10,11,12)(H2,17,18,19)/t6-/m1/s1" TNM InChIKey InChI 1.03 BQDRSOMUPPCKPB-ZCFIWIBFSA-N # _pdbx_chem_comp_identifier.comp_id TNM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.5.0 _pdbx_chem_comp_identifier.identifier "[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-phosphonooxy-phosphinic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TNM "Create component" 2008-12-18 PDBJ TNM "Modify aromatic_flag" 2011-06-04 RCSB TNM "Modify descriptor" 2011-06-04 RCSB TNM "Modify synonyms" 2021-03-13 RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TNM Tenofovir-monophosphate PDB ? 2 TNM PMPA-monophosphate PDB ? ##