data_TO1 # _chem_comp.id TO1 _chem_comp.name "4-amino-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C12 H13 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms TOYOCAMYCIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-22 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 291.263 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TO1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RE4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TO1 C C C 0 1 N N R -18.647 -3.527 3.758 1.159 -0.393 0.402 C TO1 1 TO1 N N N 0 1 Y N N -17.781 -3.685 2.563 -0.216 0.070 0.197 N TO1 2 TO1 O O O 0 1 N N N -18.870 -2.140 4.052 2.029 0.724 0.688 O TO1 3 TO1 C2 C2 C 0 1 Y N N -17.796 -4.768 1.770 -1.334 -0.704 0.362 C2 TO1 4 TO1 N2 N2 N 0 1 Y N N -18.487 -5.916 1.739 -1.539 -1.972 0.717 N2 TO1 5 TO1 O2 O2 O 0 1 N N N -19.025 -4.950 5.625 1.618 -2.431 -0.867 O2 TO1 6 TO1 C3 C3 C 0 1 Y N N -18.295 -6.838 0.799 -2.758 -2.460 0.794 C3 TO1 7 TO1 N3 N3 N 0 1 Y N N -17.394 -6.704 -0.196 -3.832 -1.739 0.530 N3 TO1 8 TO1 O3 O3 O 0 1 N N N -18.273 -3.401 7.153 4.061 -1.710 -0.889 O3 TO1 9 TO1 C4 C4 C 0 1 Y N N -16.628 -5.627 -0.327 -3.728 -0.463 0.168 C4 TO1 10 TO1 N4 N4 N 0 1 N N N -14.450 -2.344 -0.404 -3.273 3.499 -0.951 N4 TO1 11 TO1 O4 O4 O 0 1 N N N -16.228 -0.819 4.899 4.466 2.167 1.367 O4 TO1 12 TO1 C5 C5 C 0 1 Y N N -16.811 -4.607 0.700 -2.450 0.099 0.072 C5 TO1 13 TO1 N5 N5 N 0 1 N N N -15.704 -5.437 -1.283 -4.856 0.290 -0.109 N5 TO1 14 TO1 C6 C6 C 0 1 Y N N -16.288 -3.254 1.024 -1.917 1.424 -0.282 C6 TO1 15 TO1 C7 C7 C 0 1 Y N N -16.873 -2.768 2.153 -0.561 1.332 -0.179 C7 TO1 16 TO1 C8 C8 C 0 1 N N N -15.296 -2.587 0.386 -2.673 2.581 -0.655 C8 TO1 17 TO1 C9 C9 C 0 1 N N R -18.010 -4.168 4.986 1.719 -1.006 -0.901 C9 TO1 18 TO1 C10 C10 C 0 1 N N S -17.699 -3.028 5.907 3.201 -0.569 -0.914 C10 TO1 19 TO1 C11 C11 C 0 1 N N R -18.434 -1.799 5.369 3.361 0.257 0.382 C11 TO1 20 TO1 C12 C12 C 0 1 N N N -17.575 -0.531 5.323 4.299 1.442 0.147 C12 TO1 21 TO1 H H H 0 1 N N N -19.601 -4.023 3.527 1.196 -1.121 1.212 H TO1 22 TO1 HO2 HO2 H 0 1 N N N -18.664 -5.367 6.398 1.956 -2.868 -1.661 HO2 TO1 23 TO1 H3 H3 H 0 1 N N N -18.890 -7.739 0.834 -2.886 -3.492 1.086 H3 TO1 24 TO1 HO3 HO3 H 0 1 N N N -18.113 -2.717 7.793 5.003 -1.493 -0.896 HO3 TO1 25 TO1 HO4 HO4 H 0 1 N N N -15.722 -0.015 4.881 5.051 2.934 1.292 HO4 TO1 26 TO1 HN5 HN5 H 0 1 N N N -15.679 -6.234 -1.886 -5.736 -0.112 -0.039 HN5 TO1 27 TO1 HN5A HN5A H 0 0 N N N -15.938 -4.624 -1.815 -4.766 1.219 -0.372 HN5A TO1 28 TO1 H7 H7 H 0 1 N N N -16.654 -1.826 2.633 0.134 2.136 -0.369 H7 TO1 29 TO1 H9 H9 H 0 1 N N N -17.128 -4.778 4.741 1.194 -0.607 -1.768 H9 TO1 30 TO1 H10 H10 H 0 1 N N N -16.624 -2.812 5.996 3.410 0.047 -1.789 H10 TO1 31 TO1 H11 H11 H 0 1 N N N -19.265 -1.557 6.047 3.737 -0.372 1.189 H11 TO1 32 TO1 H12 H12 H 0 1 N N N -17.542 -0.089 6.330 3.872 2.099 -0.610 H12 TO1 33 TO1 H12A H12A H 0 0 N N N -18.026 0.177 4.612 5.268 1.076 -0.194 H12A TO1 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TO1 C N SING N N 1 TO1 C O SING N N 2 TO1 C C9 SING N N 3 TO1 N C2 SING Y N 4 TO1 N C7 SING Y N 5 TO1 O C11 SING N N 6 TO1 C2 N2 DOUB Y N 7 TO1 C2 C5 SING Y N 8 TO1 N2 C3 SING Y N 9 TO1 O2 C9 SING N N 10 TO1 C3 N3 DOUB Y N 11 TO1 N3 C4 SING Y N 12 TO1 O3 C10 SING N N 13 TO1 C4 C5 DOUB Y N 14 TO1 C4 N5 SING N N 15 TO1 N4 C8 TRIP N N 16 TO1 O4 C12 SING N N 17 TO1 C5 C6 SING Y N 18 TO1 C6 C7 DOUB Y N 19 TO1 C6 C8 SING N N 20 TO1 C9 C10 SING N N 21 TO1 C10 C11 SING N N 22 TO1 C11 C12 SING N N 23 TO1 C H SING N N 24 TO1 O2 HO2 SING N N 25 TO1 C3 H3 SING N N 26 TO1 O3 HO3 SING N N 27 TO1 O4 HO4 SING N N 28 TO1 N5 HN5 SING N N 29 TO1 N5 HN5A SING N N 30 TO1 C7 H7 SING N N 31 TO1 C9 H9 SING N N 32 TO1 C10 H10 SING N N 33 TO1 C11 H11 SING N N 34 TO1 C12 H12 SING N N 35 TO1 C12 H12A SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TO1 SMILES ACDLabs 12.01 "N#Cc2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)N" TO1 SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cc(C#N)c12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" TO1 SMILES CACTVS 3.370 "Nc1ncnc2n(cc(C#N)c12)[CH]3O[CH](CO)[CH](O)[CH]3O" TO1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1c(c2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N)C#N" TO1 SMILES "OpenEye OEToolkits" 1.7.2 "c1c(c2c(ncnc2n1C3C(C(C(O3)CO)O)O)N)C#N" TO1 InChI InChI 1.03 "InChI=1S/C12H13N5O4/c13-1-5-2-17(11-7(5)10(14)15-4-16-11)12-9(20)8(19)6(3-18)21-12/h2,4,6,8-9,12,18-20H,3H2,(H2,14,15,16)/t6-,8-,9-,12-/m1/s1" TO1 InChIKey InChI 1.03 XOKJUSAYZUAMGJ-WOUKDFQISA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TO1 "SYSTEMATIC NAME" ACDLabs 12.01 "4-amino-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile" TO1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "4-azanyl-7-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]pyrrolo[2,3-d]pyrimidine-5-carbonitrile" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TO1 "Create component" 2011-04-22 RCSB TO1 "Modify aromatic_flag" 2011-06-04 RCSB TO1 "Modify descriptor" 2011-06-04 RCSB TO1 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TO1 _pdbx_chem_comp_synonyms.name TOYOCAMYCIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##