data_TP7 # _chem_comp.id TP7 _chem_comp.name "Coenzyme B" _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C11 H22 N O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 7-MERCAPTOHEPTANOYLTHREONINEPHOSPHATE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.334 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TP7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5A0Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TP7 N N N 0 1 N N N 24.670 38.365 -47.202 -0.812 -0.066 -0.461 N TP7 1 TP7 P P P 0 1 N N N 20.509 36.558 -47.533 -5.053 -0.827 0.476 P TP7 2 TP7 O1P O1P O 0 1 N N N 19.898 36.903 -46.191 -6.025 -1.124 -0.599 O1P TP7 3 TP7 O2P O2P O 0 1 N N N 21.987 37.197 -47.576 -5.322 0.654 1.048 O2P TP7 4 TP7 O3P O3P O 0 1 N N N 19.736 37.090 -48.711 -5.222 -1.900 1.664 O3P TP7 5 TP7 O4P O4P O 0 1 N N N 20.811 35.075 -47.677 -3.558 -0.910 -0.114 O4P TP7 6 TP7 CB CB C 0 1 N N N 22.212 38.593 -47.240 -3.125 -0.156 -1.248 CB TP7 7 TP7 C C C 0 1 N N N 23.413 37.695 -45.237 -2.381 1.610 0.324 C TP7 8 TP7 O O O 0 1 N N N 23.961 36.549 -45.377 -3.423 2.448 0.204 O TP7 9 TP7 OXT OXT O 0 1 N N N 22.840 38.113 -44.204 -1.778 1.543 1.369 OXT TP7 10 TP7 CA CA C 0 1 N N N 23.490 38.656 -46.407 -1.964 0.754 -0.843 CA TP7 11 TP7 CG CG C 0 1 N N N 22.232 39.448 -48.489 -2.664 -1.112 -2.350 CG TP7 12 TP7 O1 O1 O 0 1 N N N 25.253 40.524 -47.496 0.602 1.572 -0.951 O1 TP7 13 TP7 C1 C1 C 0 1 N N N 25.535 39.316 -47.617 0.434 0.439 -0.552 C1 TP7 14 TP7 C2 C2 C 0 1 N N N 26.847 38.821 -48.195 1.620 -0.404 -0.159 C2 TP7 15 TP7 C3 C3 C 0 1 N N N 27.958 39.857 -48.068 2.906 0.401 -0.356 C3 TP7 16 TP7 C4 C4 C 0 1 N N N 29.365 39.231 -48.364 4.110 -0.455 0.044 C4 TP7 17 TP7 C5 C5 C 0 1 N N N 29.487 38.590 -49.766 5.396 0.350 -0.154 C5 TP7 18 TP7 C6 C6 C 0 1 N N N 29.277 39.541 -50.940 6.599 -0.506 0.246 C6 TP7 19 TP7 C7 C7 C 0 1 N N N 30.377 40.618 -50.953 7.885 0.299 0.048 C7 TP7 20 TP7 S7 S7 S 0 1 N N N 30.212 41.770 -52.334 9.312 -0.716 0.522 S7 TP7 21 TP7 H H H 0 1 N N N ? ? ? -0.946 -0.970 -0.138 H TP7 22 TP7 HA HA H 0 1 N N N ? ? ? -1.693 1.392 -1.684 HA TP7 23 TP7 H2P H2P H 0 1 N N N ? ? ? -4.720 0.917 1.758 H2P TP7 24 TP7 H3P H3P H 0 1 N N N ? ? ? -6.101 -1.905 2.068 H3P TP7 25 TP7 HB HB H 0 1 N N N ? ? ? -3.952 0.451 -1.617 HB TP7 26 TP7 HG1C HG1C H 0 0 N N N ? ? ? -2.334 -0.537 -3.216 HG1C TP7 27 TP7 HG2C HG2C H 0 0 N N N ? ? ? -1.837 -1.720 -1.982 HG2C TP7 28 TP7 HG3C HG3C H 0 0 N N N ? ? ? -3.491 -1.761 -2.639 HG3C TP7 29 TP7 HC HC H 0 1 N N N ? ? ? -3.653 2.977 0.980 HC TP7 30 TP7 H21C H21C H 0 0 N N N ? ? ? 1.529 -0.692 0.889 H21C TP7 31 TP7 H22C H22C H 0 0 N N N ? ? ? 1.652 -1.298 -0.780 H22C TP7 32 TP7 H31C H31C H 0 0 N N N ? ? ? 2.997 0.689 -1.403 H31C TP7 33 TP7 H32C H32C H 0 0 N N N ? ? ? 2.874 1.296 0.266 H32C TP7 34 TP7 H41C H41C H 0 0 N N N ? ? ? 4.019 -0.743 1.091 H41C TP7 35 TP7 H42C H42C H 0 0 N N N ? ? ? 4.142 -1.350 -0.578 H42C TP7 36 TP7 H51C H51C H 0 0 N N N ? ? ? 5.487 0.638 -1.201 H51C TP7 37 TP7 H52C H52C H 0 0 N N N ? ? ? 5.364 1.245 0.468 H52C TP7 38 TP7 H61C H61C H 0 0 N N N ? ? ? 6.508 -0.794 1.293 H61C TP7 39 TP7 H62C H62C H 0 0 N N N ? ? ? 6.631 -1.401 -0.376 H62C TP7 40 TP7 H71C H71C H 0 0 N N N ? ? ? 7.977 0.587 -0.999 H71C TP7 41 TP7 H72C H72C H 0 0 N N N ? ? ? 7.853 1.194 0.670 H72C TP7 42 TP7 H7 H7 H 0 1 N N N ? ? ? 10.354 0.105 0.301 H7 TP7 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TP7 N CA SING N N 1 TP7 N C1 SING N N 2 TP7 P O1P DOUB N N 3 TP7 P O2P SING N N 4 TP7 P O3P SING N N 5 TP7 P O4P SING N N 6 TP7 O4P CB SING N N 7 TP7 CB CA SING N N 8 TP7 CB CG SING N N 9 TP7 C O SING N N 10 TP7 C OXT DOUB N N 11 TP7 C CA SING N N 12 TP7 O1 C1 DOUB N N 13 TP7 C1 C2 SING N N 14 TP7 C2 C3 SING N N 15 TP7 C3 C4 SING N N 16 TP7 C4 C5 SING N N 17 TP7 C5 C6 SING N N 18 TP7 C6 C7 SING N N 19 TP7 C7 S7 SING N N 20 TP7 N H SING N N 21 TP7 CA HA SING N N 22 TP7 O2P H2P SING N N 23 TP7 O3P H3P SING N N 24 TP7 CB HB SING N N 25 TP7 CG HG1C SING N N 26 TP7 CG HG2C SING N N 27 TP7 CG HG3C SING N N 28 TP7 O HC SING N N 29 TP7 C2 H21C SING N N 30 TP7 C2 H22C SING N N 31 TP7 C3 H31C SING N N 32 TP7 C3 H32C SING N N 33 TP7 C4 H41C SING N N 34 TP7 C4 H42C SING N N 35 TP7 C5 H51C SING N N 36 TP7 C5 H52C SING N N 37 TP7 C6 H61C SING N N 38 TP7 C6 H62C SING N N 39 TP7 C7 H71C SING N N 40 TP7 C7 H72C SING N N 41 TP7 S7 H7 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TP7 InChI InChI 1.03 "InChI=1S/C11H22NO7PS/c1-8(19-20(16,17)18)10(11(14)15)12-9(13)6-4-2-3-5-7-21/h8,10,21H,2-7H2,1H3,(H,12,13)(H,14,15)(H2,16,17,18)/t8-,10+/m1/s1" TP7 InChIKey InChI 1.03 JBJSVEVEEGOEBZ-SCZZXKLOSA-N TP7 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O[P](O)(O)=O)[C@H](NC(=O)CCCCCCS)C(O)=O" TP7 SMILES CACTVS 3.385 "C[CH](O[P](O)(O)=O)[CH](NC(=O)CCCCCCS)C(O)=O" TP7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]([C@@H](C(=O)O)NC(=O)CCCCCCS)OP(=O)(O)O" TP7 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(C(=O)O)NC(=O)CCCCCCS)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id TP7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.7.6 _pdbx_chem_comp_identifier.identifier "(2S,3R)-3-phosphonooxy-2-(7-sulfanylheptanoylamino)butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TP7 "Create component" 1999-07-08 EBI TP7 "Modify descriptor" 2011-06-04 RCSB TP7 "Other modification" 2015-04-24 EBI TP7 "Other modification" 2015-07-15 EBI TP7 "Other modification" 2017-03-18 EBI TP7 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TP7 _pdbx_chem_comp_synonyms.name 7-MERCAPTOHEPTANOYLTHREONINEPHOSPHATE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##