data_TQR # _chem_comp.id TQR _chem_comp.name "4-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl]pyrimidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H13 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-29 _chem_comp.pdbx_modified_date 2024-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TQR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8J5E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TQR N1 N1 N 0 1 N N N N N N 16.181 14.044 2.625 -1.248 0.351 -0.442 N1 TQR 1 TQR N3 N2 N 0 1 N N N N N N 19.255 11.912 0.749 -5.098 -0.610 0.505 N3 TQR 2 TQR C4 C1 C 0 1 N N R N N N 15.152 14.769 3.379 0.147 0.674 -0.751 C4 TQR 3 TQR C5 C2 C 0 1 N N N N N N 11.798 15.066 2.016 3.634 -1.362 -0.304 C5 TQR 4 TQR C6 C3 C 0 1 N N N N N N 17.172 13.495 3.297 -1.534 -0.464 0.590 C6 TQR 5 TQR C7 C4 C 0 1 N N N N N N 18.176 12.667 1.341 -3.801 -0.284 0.183 C7 TQR 6 TQR C8 C5 C 0 1 N N N N N N 17.057 13.277 0.510 -3.536 0.582 -0.899 C8 TQR 7 TQR C1 C6 C 0 1 N N R N N N 12.536 15.108 3.359 2.708 -0.206 -0.686 C1 TQR 8 TQR C2 C7 C 0 1 N N S N N N 13.351 16.390 3.441 2.338 0.633 0.554 C2 TQR 9 TQR C3 C8 C 0 1 N N R N N N 14.693 16.092 2.753 0.898 1.128 0.518 C3 TQR 10 TQR C9 C9 C 0 1 N N N N N N 16.122 13.948 1.300 -2.250 0.883 -1.197 C9 TQR 11 TQR N2 N3 N 0 1 N N N N N N 18.239 12.769 2.748 -2.793 -0.773 0.893 N2 TQR 12 TQR O1 O1 O 0 1 N N N N N N 13.578 16.669 4.789 3.213 1.760 0.627 O1 TQR 13 TQR O2 O2 O 0 1 N N N N N N 15.573 17.123 3.048 0.899 2.556 0.568 O2 TQR 14 TQR O3 O3 O 0 1 N N N N N N 10.437 15.291 2.245 3.024 -2.140 0.728 O3 TQR 15 TQR O4 O4 O 0 1 N N N N N N 17.218 13.607 4.658 -0.625 -0.927 1.258 O4 TQR 16 TQR S1 S1 S 0 1 N N N N N N 13.681 13.720 3.457 1.073 -0.837 -1.245 S1 TQR 17 TQR H1 H1 H 0 1 N N N N N N 19.965 11.514 1.330 -5.278 -1.200 1.254 H1 TQR 18 TQR H2 H2 H 0 1 N N N N N N 19.293 11.787 -0.242 -5.833 -0.250 -0.016 H2 TQR 19 TQR H3 H3 H 0 1 N N N N N N 15.475 14.939 4.417 0.204 1.434 -1.530 H3 TQR 20 TQR H4 H4 H 0 1 N N N N N N 11.937 14.080 1.548 3.810 -1.991 -1.177 H4 TQR 21 TQR H5 H5 H 0 1 N N N N N N 12.195 15.847 1.351 4.583 -0.964 0.054 H5 TQR 22 TQR H6 H6 H 0 1 N N N N N N 16.994 13.200 -0.565 -4.345 0.992 -1.484 H6 TQR 23 TQR H7 H7 H 0 1 N N N N N N 11.833 15.026 4.201 3.167 0.418 -1.453 H7 TQR 24 TQR H8 H8 H 0 1 N N N N N N 12.832 17.210 2.924 2.477 0.022 1.447 H8 TQR 25 TQR H9 H9 H 0 1 N N N N N N 14.543 15.967 1.671 0.374 0.745 1.394 H9 TQR 26 TQR H10 H10 H 0 1 N N N N N N 15.291 14.423 0.799 -2.021 1.537 -2.025 H10 TQR 27 TQR H11 H11 H 0 1 N N N N N N 12.751 16.854 5.218 4.147 1.528 0.723 H11 TQR 28 TQR H12 H12 H 0 1 N N N N N N 15.264 17.928 2.648 1.353 2.922 1.340 H12 TQR 29 TQR H13 H13 H 0 1 N N N N N N 9.968 15.267 1.419 3.557 -2.892 1.021 H13 TQR 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TQR C8 C9 DOUB N N 1 TQR C8 C7 SING N N 2 TQR N3 C7 SING N N 3 TQR C9 N1 SING N N 4 TQR C7 N2 DOUB N N 5 TQR C5 O3 SING N N 6 TQR C5 C1 SING N N 7 TQR N1 C6 SING N N 8 TQR N1 C4 SING N N 9 TQR N2 C6 SING N N 10 TQR C3 O2 SING N N 11 TQR C3 C4 SING N N 12 TQR C3 C2 SING N N 13 TQR C6 O4 DOUB N N 14 TQR C1 C2 SING N N 15 TQR C1 S1 SING N N 16 TQR C4 S1 SING N N 17 TQR C2 O1 SING N N 18 TQR N3 H1 SING N N 19 TQR N3 H2 SING N N 20 TQR C4 H3 SING N N 21 TQR C5 H4 SING N N 22 TQR C5 H5 SING N N 23 TQR C8 H6 SING N N 24 TQR C1 H7 SING N N 25 TQR C2 H8 SING N N 26 TQR C3 H9 SING N N 27 TQR C9 H10 SING N N 28 TQR O1 H11 SING N N 29 TQR O2 H12 SING N N 30 TQR O3 H13 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TQR InChI InChI 1.06 "InChI=1S/C9H13N3O4S/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1" TQR InChIKey InChI 1.06 GAKJJSAXUFZQTL-XVFCMESISA-N TQR SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@@H]2S[C@H](CO)[C@@H](O)[C@H]2O" TQR SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2S[CH](CO)[CH](O)[CH]2O" TQR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](S2)CO)O)O" TQR SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(S2)CO)O)O" # _pdbx_chem_comp_identifier.comp_id TQR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl]pyrimidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TQR "Create component" 2023-04-29 PDBJ TQR "Initial release" 2024-04-24 RCSB #