data_TRD # _chem_comp.id TRD _chem_comp.name TRIDECANE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H28" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "LIPID FRAGMENT" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-09-17 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 184.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TRD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CWQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TRD C1 C1 C 0 1 N N N -34.169 37.671 -3.111 -0.403 0.000 7.495 C1 TRD 1 TRD C2 C2 C 0 1 N N N -34.704 36.988 -4.339 0.480 0.000 6.246 C2 TRD 2 TRD C3 C3 C 0 1 N N N -33.905 35.796 -4.791 -0.403 0.000 4.997 C3 TRD 3 TRD C4 C4 C 0 1 N N N -33.924 35.515 -6.265 0.480 0.000 3.747 C4 TRD 4 TRD C5 C5 C 0 1 N N N -33.694 34.082 -6.654 -0.403 0.000 2.498 C5 TRD 5 TRD C6 C6 C 0 1 N N N -33.725 33.835 -8.122 0.480 0.000 1.249 C6 TRD 6 TRD C7 C7 C 0 1 N N N -32.659 32.947 -8.682 -0.403 0.000 0.000 C7 TRD 7 TRD C8 C8 C 0 1 N N N -32.757 32.760 -10.163 0.480 0.000 -1.249 C8 TRD 8 TRD C9 C9 C 0 1 N N N -31.888 31.698 -10.760 -0.403 0.000 -2.498 C9 TRD 9 TRD C10 C10 C 0 1 N N N -32.012 31.542 -12.254 0.480 0.000 -3.747 C10 TRD 10 TRD C11 C11 C 0 1 N N N -33.352 31.075 -12.754 -0.403 0.000 -4.997 C11 TRD 11 TRD C12 C12 C 0 1 N N N -33.491 30.912 -14.248 0.480 0.000 -6.246 C12 TRD 12 TRD C13 C13 C 0 1 N N N -34.789 30.301 -14.687 -0.403 0.000 -7.495 C13 TRD 13 TRD H11 1H1 H 0 1 N N N -34.761 38.554 -2.776 -1.032 -0.890 7.495 H11 TRD 14 TRD H12 2H1 H 0 1 N N N -34.059 36.939 -2.277 0.226 0.000 8.385 H12 TRD 15 TRD H13 3H1 H 0 1 N N N -33.100 37.954 -3.259 -1.032 0.890 7.495 H13 TRD 16 TRD H21 1H2 H 0 1 N N N -35.772 36.704 -4.190 1.109 0.890 6.246 H21 TRD 17 TRD H22 2H2 H 0 1 N N N -34.813 37.720 -5.172 1.109 -0.890 6.246 H22 TRD 18 TRD H31 1H3 H 0 1 N N N -32.852 35.888 -4.436 -1.032 -0.890 4.997 H31 TRD 19 TRD H32 2H3 H 0 1 N N N -34.226 34.888 -4.228 -1.032 0.890 4.997 H32 TRD 20 TRD H41 1H4 H 0 1 N N N -34.877 35.883 -6.711 1.109 0.890 3.747 H41 TRD 21 TRD H42 2H4 H 0 1 N N N -33.193 36.174 -6.788 1.109 -0.890 3.747 H42 TRD 22 TRD H51 1H5 H 0 1 N N N -32.739 33.707 -6.215 -1.032 -0.890 2.498 H51 TRD 23 TRD H52 2H5 H 0 1 N N N -34.418 33.414 -6.130 -1.032 0.890 2.498 H52 TRD 24 TRD H61 1H6 H 0 1 N N N -34.727 33.442 -8.412 1.109 0.890 1.249 H61 TRD 25 TRD H62 2H6 H 0 1 N N N -33.720 34.809 -8.663 1.109 -0.890 1.249 H62 TRD 26 TRD H71 1H7 H 0 1 N N N -31.646 33.316 -8.396 -1.032 -0.890 0.000 H71 TRD 27 TRD H72 2H7 H 0 1 N N N -32.650 31.962 -8.159 -1.032 0.890 0.000 H72 TRD 28 TRD H81 1H8 H 0 1 N N N -33.819 32.580 -10.449 1.109 0.890 -1.249 H81 TRD 29 TRD H82 2H8 H 0 1 N N N -32.569 33.731 -10.677 1.109 -0.890 -1.249 H82 TRD 30 TRD H91 1H9 H 0 1 N N N -30.822 31.867 -10.477 -1.032 -0.890 -2.498 H91 TRD 31 TRD H92 2H9 H 0 1 N N N -32.070 30.721 -10.254 -1.032 0.890 -2.498 H92 TRD 32 TRD H101 1H10 H 0 0 N N N -31.728 32.494 -12.760 1.109 0.890 -3.747 H101 TRD 33 TRD H102 2H10 H 0 0 N N N -31.209 30.867 -12.633 1.109 -0.890 -3.747 H102 TRD 34 TRD H111 1H11 H 0 0 N N N -33.632 30.123 -12.244 -1.032 -0.890 -4.997 H111 TRD 35 TRD H112 2H11 H 0 0 N N N -34.151 31.752 -12.373 -1.032 0.890 -4.997 H112 TRD 36 TRD H121 1H12 H 0 0 N N N -33.326 31.887 -14.762 1.109 0.890 -6.246 H121 TRD 37 TRD H122 2H12 H 0 0 N N N -32.630 30.333 -14.657 1.109 -0.890 -6.246 H122 TRD 38 TRD H131 1H13 H 0 0 N N N -34.891 30.180 -15.790 0.226 0.000 -8.385 H131 TRD 39 TRD H132 2H13 H 0 0 N N N -34.953 29.325 -14.172 -1.032 -0.890 -7.495 H132 TRD 40 TRD H133 3H13 H 0 0 N N N -35.649 30.880 -14.277 -1.032 0.890 -7.495 H133 TRD 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TRD C1 C2 SING N N 1 TRD C1 H11 SING N N 2 TRD C1 H12 SING N N 3 TRD C1 H13 SING N N 4 TRD C2 C3 SING N N 5 TRD C2 H21 SING N N 6 TRD C2 H22 SING N N 7 TRD C3 C4 SING N N 8 TRD C3 H31 SING N N 9 TRD C3 H32 SING N N 10 TRD C4 C5 SING N N 11 TRD C4 H41 SING N N 12 TRD C4 H42 SING N N 13 TRD C5 C6 SING N N 14 TRD C5 H51 SING N N 15 TRD C5 H52 SING N N 16 TRD C6 C7 SING N N 17 TRD C6 H61 SING N N 18 TRD C6 H62 SING N N 19 TRD C7 C8 SING N N 20 TRD C7 H71 SING N N 21 TRD C7 H72 SING N N 22 TRD C8 C9 SING N N 23 TRD C8 H81 SING N N 24 TRD C8 H82 SING N N 25 TRD C9 C10 SING N N 26 TRD C9 H91 SING N N 27 TRD C9 H92 SING N N 28 TRD C10 C11 SING N N 29 TRD C10 H101 SING N N 30 TRD C10 H102 SING N N 31 TRD C11 C12 SING N N 32 TRD C11 H111 SING N N 33 TRD C11 H112 SING N N 34 TRD C12 C13 SING N N 35 TRD C12 H121 SING N N 36 TRD C12 H122 SING N N 37 TRD C13 H131 SING N N 38 TRD C13 H132 SING N N 39 TRD C13 H133 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TRD SMILES ACDLabs 10.04 "C(CCCCCCCC)CCCC" TRD SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCCCC TRD SMILES CACTVS 3.341 CCCCCCCCCCCCC TRD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCC TRD SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCC TRD InChI InChI 1.03 "InChI=1S/C13H28/c1-3-5-7-9-11-13-12-10-8-6-4-2/h3-13H2,1-2H3" TRD InChIKey InChI 1.03 IIYFAKIEWZDVMP-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TRD "SYSTEMATIC NAME" ACDLabs 10.04 tridecane TRD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 tridecane # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TRD "Create component" 1999-09-17 EBI TRD "Modify descriptor" 2011-06-04 RCSB TRD "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TRD _pdbx_chem_comp_synonyms.name "LIPID FRAGMENT" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##