data_TTM # _chem_comp.id TTM _chem_comp.name "N3-ETHYL-THYMIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H19 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-09-13 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.262 _chem_comp.one_letter_code T _chem_comp.three_letter_code TTM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XCI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TTM P P P 0 1 N N N 1.133 7.673 8.322 -3.968 -1.665 3.118 P TTM 1 TTM OP1 O1P O 0 1 N N N -0.233 8.141 8.649 -4.406 -2.599 4.208 OP1 TTM 2 TTM OP2 O2P O 0 1 N N N 1.846 8.260 7.165 -3.912 -2.311 1.636 OP2 TTM 3 TTM "O5'" O5* O 0 1 N N N 2.074 7.856 9.614 -2.493 -1.028 3.315 "O5'" TTM 4 TTM "C5'" C5* C 0 1 N N N 1.524 8.067 10.914 -2.005 -0.136 2.327 "C5'" TTM 5 TTM "C4'" C4* C 0 1 N N R 0.382 7.142 11.214 -0.611 0.328 2.728 "C4'" TTM 6 TTM "O4'" O4* O 0 1 N N N 0.841 5.797 11.130 0.247 -0.829 2.764 "O4'" TTM 7 TTM "C1'" C1* C 0 1 N N R 0.480 5.223 12.384 1.157 -0.778 1.657 "C1'" TTM 8 TTM N1 N1 N 0 1 N N N 1.180 3.950 12.640 1.164 -2.047 0.989 N1 TTM 9 TTM C6 C6 C 0 1 N N N 2.446 3.758 12.186 0.003 -2.784 0.953 C6 TTM 10 TTM C2 C2 C 0 1 N N N 0.505 2.966 13.340 2.353 -2.494 0.395 C2 TTM 11 TTM O2 O2 O 0 1 N N N -0.632 3.154 13.761 3.404 -1.846 0.422 O2 TTM 12 TTM N3 N3 N 0 1 N N N 1.176 1.766 13.557 2.254 -3.760 -0.242 N3 TTM 13 TTM C1Q C1Q C 0 1 N N N 0.523 0.771 14.247 3.470 -4.262 -0.873 C1Q TTM 14 TTM C2Q C2Q C 0 1 N N N 1.041 0.517 15.553 4.279 -5.070 0.084 C2Q TTM 15 TTM C4 C4 C 0 1 N N N 2.468 1.514 13.113 1.099 -4.552 -0.306 C4 TTM 16 TTM O4 O4 O 0 1 N N N 3.007 0.430 13.329 1.023 -5.649 -0.856 O4 TTM 17 TTM C5 C5 C 0 1 N N N 3.089 2.603 12.397 -0.101 -3.976 0.359 C5 TTM 18 TTM C5M C5M C 0 1 N N N 4.506 2.433 11.876 -1.371 -4.768 0.327 C5M TTM 19 TTM "C2'" C2* C 0 1 N N N 0.739 6.358 13.345 0.710 0.360 0.754 "C2'" TTM 20 TTM "C3'" C3* C 0 1 N N S -0.225 7.263 12.605 0.008 1.286 1.720 "C3'" TTM 21 TTM "O3'" O3* O 0 1 N N N -1.516 6.671 12.735 0.965 2.121 2.368 "O3'" TTM 22 TTM OP3 O3P O 0 1 N Y N ? ? ? -4.901 -0.360 2.920 OP3 TTM 23 TTM HOP2 2HOP H 0 0 N N N 2.722 7.959 6.955 -4.684 -2.823 1.313 HOP2 TTM 24 TTM "H5'" 1H5* H 0 1 N N N 2.317 7.941 11.649 -1.971 -0.654 1.366 "H5'" TTM 25 TTM "H5''" 2H5* H 0 0 N N N 1.088 9.054 10.998 -2.683 0.718 2.254 "H5''" TTM 26 TTM "H4'" H4* H 0 1 N N N -0.426 7.291 10.498 -0.644 0.753 3.736 "H4'" TTM 27 TTM "H1'" H1* H 0 1 N N N -0.598 5.114 12.343 2.163 -0.604 2.054 "H1'" TTM 28 TTM H6 H6 H 0 1 N N N 2.939 4.565 11.648 -0.853 -2.335 1.448 H6 TTM 29 TTM H1Q H1Q H 0 1 N N N 0.625 -0.140 13.659 3.173 -4.871 -1.732 H1Q TTM 30 TTM H2Q H2Q H 0 1 N N N -0.540 0.984 14.358 4.040 -3.400 -1.232 H2Q TTM 31 TTM H2 H2 H 0 1 N N N 0.511 -0.289 16.112 4.594 -4.462 0.939 H2 TTM 32 TTM H3Q H3Q H 0 1 N N N 1.346 1.525 15.840 3.709 -5.933 0.446 H3Q TTM 33 TTM H4Q H4Q H 0 1 N N N 0.089 0.314 16.050 5.180 -5.445 -0.415 H4Q TTM 34 TTM H71 1H5M H 0 1 N N N 5.158 3.149 12.373 -2.125 -4.228 -0.243 H71 TTM 35 TTM H72 2H5M H 0 1 N N N 4.525 2.614 10.803 -1.730 -4.927 1.343 H72 TTM 36 TTM H73 3H5M H 0 1 N N N 4.843 1.419 12.089 -1.188 -5.735 -0.139 H73 TTM 37 TTM "H2'" 1H2* H 0 1 N N N 1.774 6.695 13.326 -0.003 -0.001 0.003 "H2'" TTM 38 TTM "H2''" 2H2* H 0 0 N N N 0.397 6.122 14.351 1.556 0.818 0.232 "H2''" TTM 39 TTM "H3'" H3* H 0 1 N N N -0.255 8.290 12.967 -0.722 1.941 1.236 "H3'" TTM 40 TTM "HO3'" H3T H 0 0 N Y N -1.894 6.746 13.603 0.488 2.898 2.709 "HO3'" TTM 41 TTM HOP3 3HOP H 0 0 N N N 0.876 -0.300 -0.209 -5.874 -0.475 2.871 HOP3 TTM 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TTM P OP1 DOUB N N 1 TTM P OP2 SING N N 2 TTM P "O5'" SING N N 3 TTM P OP3 SING N N 4 TTM OP2 HOP2 SING N N 5 TTM "O5'" "C5'" SING N N 6 TTM "C5'" "C4'" SING N N 7 TTM "C5'" "H5'" SING N N 8 TTM "C5'" "H5''" SING N N 9 TTM "C4'" "O4'" SING N N 10 TTM "C4'" "C3'" SING N N 11 TTM "C4'" "H4'" SING N N 12 TTM "O4'" "C1'" SING N N 13 TTM "C1'" N1 SING N N 14 TTM "C1'" "C2'" SING N N 15 TTM "C1'" "H1'" SING N N 16 TTM N1 C6 SING N N 17 TTM N1 C2 SING N N 18 TTM C6 C5 DOUB N N 19 TTM C6 H6 SING N N 20 TTM C2 O2 DOUB N N 21 TTM C2 N3 SING N N 22 TTM N3 C1Q SING N N 23 TTM N3 C4 SING N N 24 TTM C1Q C2Q SING N N 25 TTM C1Q H1Q SING N N 26 TTM C1Q H2Q SING N N 27 TTM C2Q H2 SING N N 28 TTM C2Q H3Q SING N N 29 TTM C2Q H4Q SING N N 30 TTM C4 O4 DOUB N N 31 TTM C4 C5 SING N N 32 TTM C5 C5M SING N N 33 TTM C5M H71 SING N N 34 TTM C5M H72 SING N N 35 TTM C5M H73 SING N N 36 TTM "C2'" "C3'" SING N N 37 TTM "C2'" "H2'" SING N N 38 TTM "C2'" "H2''" SING N N 39 TTM "C3'" "O3'" SING N N 40 TTM "C3'" "H3'" SING N N 41 TTM "O3'" "HO3'" SING N N 42 TTM OP3 HOP3 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TTM SMILES ACDLabs 10.04 "O=C1N(C(=O)N(C=C1C)C2OC(C(O)C2)COP(=O)(O)O)CC" TTM SMILES_CANONICAL CACTVS 3.341 "CCN1C(=O)N(C=C(C)C1=O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2" TTM SMILES CACTVS 3.341 "CCN1C(=O)N(C=C(C)C1=O)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2" TTM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCN1C(=O)C(=CN(C1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)C" TTM SMILES "OpenEye OEToolkits" 1.5.0 "CCN1C(=O)C(=CN(C1=O)C2CC(C(O2)COP(=O)(O)O)O)C" TTM InChI InChI 1.03 "InChI=1S/C12H19N2O8P/c1-3-13-11(16)7(2)5-14(12(13)17)10-4-8(15)9(22-10)6-21-23(18,19)20/h5,8-10,15H,3-4,6H2,1-2H3,(H2,18,19,20)/t8-,9+,10+/m0/s1" TTM InChIKey InChI 1.03 DDXOXFHHQKBFFH-IVZWLZJFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TTM "SYSTEMATIC NAME" ACDLabs 10.04 ;3-ethylthymidine 5'-(dihydrogen phosphate) ; TTM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(3-ethyl-5-methyl-2,4-dioxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TTM "Create component" 2004-09-13 PDBJ TTM "Modify descriptor" 2011-06-04 RCSB #