data_TX5 # _chem_comp.id TX5 _chem_comp.name "(1R,3R)-5-((Z)-2-((1R,7AS)-HEXAHYDRO-1-((S)-6-HYDROXY-6-METHYLHEPT-4-YN-2-YL)-7A-METHYL-1H-INDEN-4(7AH)-YLIDENE)ETHYLIDENE)CYCLOHEXANE-1,3-DIOL" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H40 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "19-NOR-14-EPI-23-YNE-1,25 DIHYDROXYVITAMIN D3; TX522" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-07-12 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.594 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TX5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TXI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TX5 O2 O1 O 0 1 N N N 17.087 17.960 34.698 -7.516 1.490 -0.518 O2 TX5 1 TX5 C1 C1 C 0 1 N N R 14.133 17.808 35.719 -4.043 2.726 0.219 C1 TX5 2 TX5 C2 C2 C 0 1 N N N 14.866 16.711 34.799 -5.572 2.744 0.182 C2 TX5 3 TX5 C3 C3 C 0 1 N N R 16.025 17.399 33.864 -6.092 1.433 -0.410 C3 TX5 4 TX5 C4 C4 C 0 1 N N N 15.313 18.541 32.971 -5.695 0.269 0.504 C4 TX5 5 TX5 C5 C5 C 0 1 N N N 14.827 19.640 33.942 -4.197 0.309 0.710 C5 TX5 6 TX5 C6 C6 C 0 1 N N N 14.596 20.954 33.683 -3.452 -0.772 0.505 C6 TX5 7 TX5 C7 C7 C 0 1 N N N 13.866 22.081 34.381 -1.987 -0.685 0.607 C7 TX5 8 TX5 C8 C8 C 0 1 N N N 13.809 23.275 33.909 -1.236 -1.737 0.297 C8 TX5 9 TX5 C9 C9 C 0 1 N N N 14.440 23.845 32.570 -1.874 -2.972 -0.297 C9 TX5 10 TX5 C10 C10 C 0 1 N N N 13.573 18.900 34.717 -3.569 1.611 1.156 C10 TX5 11 TX5 C11 C11 C 0 1 N N N 13.440 24.674 31.660 -1.071 -3.348 -1.550 C11 TX5 12 TX5 C12 C12 C 0 1 N N N 12.555 25.690 32.486 0.384 -3.572 -1.145 C12 TX5 13 TX5 C13 C13 C 0 1 N N R 11.859 25.090 33.781 1.026 -2.272 -0.660 C13 TX5 14 TX5 C14 C14 C 0 1 N N R 13.059 24.227 34.721 0.242 -1.695 0.531 C14 TX5 15 TX5 C15 C15 C 0 1 N N N 13.051 24.701 36.176 0.653 -2.612 1.700 C15 TX5 16 TX5 C16 C16 C 0 1 N N N 11.648 25.301 36.381 2.156 -2.872 1.449 C16 TX5 17 TX5 C17 C17 C 0 1 N N R 11.328 26.029 35.038 2.398 -2.641 -0.042 C17 TX5 18 TX5 C18 C18 C 0 1 N N N 10.803 23.931 33.364 1.151 -1.252 -1.794 C18 TX5 19 TX5 C20 C19 C 0 1 N N R 9.722 26.399 34.839 3.388 -1.490 -0.235 C20 TX5 20 TX5 C21 C20 C 0 1 N N N 9.571 27.805 35.508 4.774 -1.923 0.244 C21 TX5 21 TX5 C22 C21 C 0 1 N N N 8.630 25.475 35.593 2.924 -0.278 0.576 C22 TX5 22 TX5 O1 O2 O 0 1 N N N 13.111 17.074 36.485 -3.538 2.490 -1.097 O1 TX5 23 TX5 C23 C22 C 0 1 N N N 7.252 25.523 35.099 3.832 0.854 0.329 C23 TX5 24 TX5 C24 C23 C 0 1 N N N 6.175 25.602 34.738 4.556 1.757 0.132 C24 TX5 25 TX5 C25 C24 C 0 1 N N N 4.815 25.770 34.317 5.464 2.889 -0.115 C25 TX5 26 TX5 C27 C25 C 0 1 N N N 3.917 24.579 34.740 5.000 4.101 0.696 C27 TX5 27 TX5 C26 C26 C 0 1 N N N 4.781 25.954 32.795 6.883 2.506 0.308 C26 TX5 28 TX5 O3 O3 O 0 1 N N N 4.402 26.947 34.981 5.452 3.214 -1.506 O3 TX5 29 TX5 H1 H1 H 0 1 N N N 17.487 17.267 35.211 -7.915 0.690 -0.887 H1 TX5 30 TX5 H2 H2 H 0 1 N N N 14.873 18.270 36.389 -3.677 3.687 0.581 H2 TX5 31 TX5 H3 H3 H 0 1 N N N 14.119 16.231 34.149 -5.958 2.862 1.195 H3 TX5 32 TX5 H4 H4 H 0 1 N N N 15.331 15.953 35.446 -5.911 3.577 -0.433 H4 TX5 33 TX5 H5 H5 H 0 1 N N N 16.428 16.628 33.191 -5.658 1.283 -1.399 H5 TX5 34 TX5 H6 H6 H 0 1 N N N 16.033 18.963 32.254 -6.200 0.369 1.465 H6 TX5 35 TX5 H7 H7 H 0 1 N N N 14.458 18.115 32.425 -5.975 -0.675 0.037 H7 TX5 36 TX5 H9 H9 H 0 1 N N N 15.042 21.271 32.752 -3.921 -1.714 0.264 H9 TX5 37 TX5 H11 H11 H 0 1 N N N 13.371 21.873 35.318 -1.521 0.233 0.933 H11 TX5 38 TX5 H12 H12 H 0 1 N N N 14.814 22.995 31.980 -1.841 -3.789 0.424 H12 TX5 39 TX5 H13 H13 H 0 1 N N N 15.280 24.502 32.841 -2.908 -2.760 -0.569 H13 TX5 40 TX5 H14 H14 H 0 1 N N N 12.997 19.650 35.279 -2.483 1.529 1.108 H14 TX5 41 TX5 H15 H15 H 0 1 N N N 12.920 18.416 33.976 -3.877 1.836 2.177 H15 TX5 42 TX5 H16 H16 H 0 1 N N N 12.773 23.970 31.140 -1.476 -4.262 -1.983 H16 TX5 43 TX5 H17 H17 H 0 1 N N N 14.025 25.240 30.920 -1.128 -2.538 -2.277 H17 TX5 44 TX5 H18 H18 H 0 1 N N N 13.200 26.523 32.802 0.423 -4.311 -0.345 H18 TX5 45 TX5 H19 H19 H 0 1 N N N 11.765 26.070 31.821 0.940 -3.947 -2.004 H19 TX5 46 TX5 H20 H20 H 0 1 N N N 12.319 23.449 34.963 0.558 -0.670 0.722 H20 TX5 47 TX5 H21 H21 H 0 1 N N N 13.216 23.856 36.861 0.506 -2.106 2.654 H21 TX5 48 TX5 H22 H22 H 0 1 N N N 13.827 25.463 36.340 0.093 -3.546 1.670 H22 TX5 49 TX5 H23 H23 H 0 1 N N N 11.650 26.015 37.218 2.758 -2.180 2.037 H23 TX5 50 TX5 H24 H24 H 0 1 N N N 10.912 24.508 36.577 2.405 -3.900 1.713 H24 TX5 51 TX5 H25 H25 H 0 1 N N N 11.891 26.973 35.007 2.785 -3.549 -0.506 H25 TX5 52 TX5 H26 H26 H 0 1 N N N 10.328 23.524 34.269 0.174 -1.098 -2.253 H26 TX5 53 TX5 H27 H27 H 0 1 N N N 10.032 24.357 32.706 1.517 -0.306 -1.393 H27 TX5 54 TX5 H28 H28 H 0 1 N N N 11.333 23.126 32.834 1.850 -1.624 -2.542 H28 TX5 55 TX5 H29 H29 H 0 1 N N N 9.490 26.454 33.765 3.435 -1.224 -1.291 H29 TX5 56 TX5 H30 H30 H 0 1 N N N 8.527 28.140 35.426 5.142 -2.731 -0.389 H30 TX5 57 TX5 H31 H31 H 0 1 N N N 9.852 27.738 36.569 5.459 -1.077 0.188 H31 TX5 58 TX5 H32 H32 H 0 1 N N N 10.228 28.525 34.999 4.710 -2.271 1.276 H32 TX5 59 TX5 H33 H33 H 0 1 N N N 8.972 24.432 35.518 1.912 -0.005 0.275 H33 TX5 60 TX5 H34 H34 H 0 1 N N N 8.613 25.780 36.650 2.933 -0.526 1.638 H34 TX5 61 TX5 H35 H35 H 0 1 N N N 13.535 16.444 37.056 -2.573 2.466 -1.149 H35 TX5 62 TX5 H36 H36 H 0 1 N N N 3.953 24.462 35.833 5.009 3.853 1.758 H36 TX5 63 TX5 H37 H37 H 0 1 N N N 2.880 24.772 34.426 5.672 4.939 0.513 H37 TX5 64 TX5 H38 H38 H 0 1 N N N 4.280 23.658 34.260 3.988 4.374 0.395 H38 TX5 65 TX5 H39 H39 H 0 1 N N N 3.740 26.084 32.464 7.214 1.643 -0.270 H39 TX5 66 TX5 H40 H40 H 0 1 N N N 5.367 26.844 32.520 7.556 3.344 0.125 H40 TX5 67 TX5 H41 H41 H 0 1 N N N 5.212 25.067 32.309 6.892 2.258 1.369 H41 TX5 68 TX5 H42 H42 H 0 1 N N N 4.432 26.808 35.920 6.029 3.954 -1.742 H42 TX5 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TX5 C11 C12 SING N N 1 TX5 C11 C9 SING N N 2 TX5 C12 C13 SING N N 3 TX5 C9 C8 SING N N 4 TX5 C26 C25 SING N N 5 TX5 C4 C3 SING N N 6 TX5 C4 C5 SING N N 7 TX5 C18 C13 SING N N 8 TX5 C6 C5 DOUB N N 9 TX5 C6 C7 SING N N 10 TX5 C13 C14 SING N N 11 TX5 C13 C17 SING N N 12 TX5 C3 O2 SING N N 13 TX5 C3 C2 SING N N 14 TX5 C8 C7 DOUB N E 15 TX5 C8 C14 SING N N 16 TX5 C5 C10 SING N N 17 TX5 C25 C24 SING N N 18 TX5 C25 C27 SING N N 19 TX5 C25 O3 SING N N 20 TX5 C10 C1 SING N N 21 TX5 C14 C15 SING N N 22 TX5 C24 C23 TRIP N N 23 TX5 C2 C1 SING N N 24 TX5 C20 C17 SING N N 25 TX5 C20 C21 SING N N 26 TX5 C20 C22 SING N N 27 TX5 C17 C16 SING N N 28 TX5 C23 C22 SING N N 29 TX5 C1 O1 SING N N 30 TX5 C15 C16 SING N N 31 TX5 O2 H1 SING N N 32 TX5 C1 H2 SING N N 33 TX5 C2 H3 SING N N 34 TX5 C2 H4 SING N N 35 TX5 C3 H5 SING N N 36 TX5 C4 H6 SING N N 37 TX5 C4 H7 SING N N 38 TX5 C6 H9 SING N N 39 TX5 C7 H11 SING N N 40 TX5 C9 H12 SING N N 41 TX5 C9 H13 SING N N 42 TX5 C10 H14 SING N N 43 TX5 C10 H15 SING N N 44 TX5 C11 H16 SING N N 45 TX5 C11 H17 SING N N 46 TX5 C12 H18 SING N N 47 TX5 C12 H19 SING N N 48 TX5 C14 H20 SING N N 49 TX5 C15 H21 SING N N 50 TX5 C15 H22 SING N N 51 TX5 C16 H23 SING N N 52 TX5 C16 H24 SING N N 53 TX5 C17 H25 SING N N 54 TX5 C18 H26 SING N N 55 TX5 C18 H27 SING N N 56 TX5 C18 H28 SING N N 57 TX5 C20 H29 SING N N 58 TX5 C21 H30 SING N N 59 TX5 C21 H31 SING N N 60 TX5 C21 H32 SING N N 61 TX5 C22 H33 SING N N 62 TX5 C22 H34 SING N N 63 TX5 O1 H35 SING N N 64 TX5 C27 H36 SING N N 65 TX5 C27 H37 SING N N 66 TX5 C27 H38 SING N N 67 TX5 C26 H39 SING N N 68 TX5 C26 H40 SING N N 69 TX5 C26 H41 SING N N 70 TX5 O3 H42 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TX5 InChI InChI 1.03 "InChI=1S/C26H40O3/c1-18(7-5-13-25(2,3)29)23-11-12-24-20(8-6-14-26(23,24)4)10-9-19-15-21(27)17-22(28)16-19/h9-10,18,21-24,27-29H,6-8,11-12,14-17H2,1-4H3/b20-10+/t18-,21-,22-,23-,24?,26-/m1/s1" TX5 InChIKey InChI 1.03 HHGRMHMXKPQNGF-XHJOVPLKSA-N TX5 SMILES_CANONICAL CACTVS 3.385 "C[C@H](CC#CC(C)(C)O)[C@H]1CC[C@@H]2C(/CCC[C@]12C)=C/[CH]=[C@@]3C[C@@H](O)[CH2][C@H](O)C3" TX5 SMILES CACTVS 3.385 "C[CH](CC#CC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=C[CH]=[C]3C[CH](O)[CH2][CH](O)C3" TX5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CC#CC(C)(C)O)[C@H]1CCC\2[C@@]1(CCC/C2=C\C=C3C[C@H](C[C@@H](C3)O)O)C" TX5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CC#CC(C)(C)O)C1CCC2C1(CCCC2=CC=C3CC(CC(C3)O)O)C" # _pdbx_chem_comp_identifier.comp_id TX5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{R})-5-[(2~{E})-2-[(1~{R},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-6-methyl-6-oxidanyl-hept-4-yn-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]cyclohexane-1,3-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TX5 "Create component" 2004-07-12 RCSB TX5 "Modify descriptor" 2011-06-04 RCSB TX5 "Modify synonyms" 2020-05-27 PDBE TX5 "Modify synonyms" 2021-03-13 RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TX5 "19-NOR-14-EPI-23-YNE-1,25 DIHYDROXYVITAMIN D3" PDB ? 2 TX5 TX522 PDB ? ##